From 3e5d0dda7f6ae98a1ecd4fa6c402d58f3cf89e13 Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Mon, 6 May 2024 17:10:32 +0200
Subject: [PATCH] centre genes and structure
---
components/OperonStructure.vue | 27 ++++++++++++++++-----------
1 file changed, 16 insertions(+), 11 deletions(-)
diff --git a/components/OperonStructure.vue b/components/OperonStructure.vue
index 421a0f76..28bbae9b 100644
--- a/components/OperonStructure.vue
+++ b/components/OperonStructure.vue
@@ -98,20 +98,24 @@ const domainGenes = computed(() => {
const structureRange = computed(() => {
const genes = toValue(computedGenes)
const minStructureWidth = genes.length * 100
-
+ let maxRange = 0
+ let minRange = 0
// get genes width
const genesWidth = xScaleGenes.value(totalGeneLengthWithPadding.value)
if (genesWidth > minStructureWidth) {
- return [0, genesWidth]
+ maxRange = genesWidth
}
else {
- if (minStructureWidth > toValue(computedPlotWidth)) return [0, toValue(computedPlotWidth)]
- return [0, minStructureWidth]
+ if (minStructureWidth > toValue(computedPlotWidth)) {
+ maxRange = toValue(computedPlotWidth)
+ }
+ else {
+ maxRange = minStructureWidth
+ }
}
-
-
-
+ minRange = computedPlotWidth.value / 2 - maxRange / 2
+ return [minRange, minRange + maxRange]
})
const xScaleStructure = computed(() => {
@@ -164,14 +168,15 @@ const structureVersion = computed(() => {
const geneNodes = computed<StructureOperonGeneWithCoordinate[]>(() => {
const genes = toValue(computedGenes)
- const xScaleVal = toValue(xScaleGenes)
+ const xScaleGenesVal = toValue(xScaleGenes)
+
const innerPaddingpPerGeneVal = toValue(paddingPerGene)
if (genes !== null) {
- let currentSumSize = props.subsystems.length > 1 ? 0 : innerPaddingpPerGeneVal / 2
+ let currentSumSize = xScaleGenesVal.domain()[1] / 2 - toValue(totalGeneLengthWithPadding) / 2
return genes.map((d) => {
- const width = xScaleVal(d.size)
+ const width = xScaleGenesVal(d.size)
const position = currentSumSize
- const x = xScaleVal(position)
+ const x = xScaleGenesVal(position)
currentSumSize = position + d.size + innerPaddingpPerGeneVal
return {
...d,
--
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