From 43480d6337267675c8fdb12a00f6a6dd500c11fe Mon Sep 17 00:00:00 2001
From: jeanrjc <jean.cury@normalesup.org>
Date: Tue, 12 Dec 2023 17:36:11 +0100
Subject: [PATCH] create more general concepts pages
---
content/2.general-concepts/0.index.md | 4 +---
...phage_trigger.md => 3.defense-systems_trigger.md} | 0
.../2.general-concepts/4.defense-systems_effector.md | 12 ++++++++++++
.../5.defense-systems-discovery.md | 7 +++++++
content/2.general-concepts/6.defensive-domains.md | 7 +++++++
content/2.general-concepts/7.MGE-defense-systems.md | 8 ++++++++
.../2.general-concepts/8.anti-defense-systems..md | 8 ++++++++
7 files changed, 43 insertions(+), 3 deletions(-)
rename content/2.general-concepts/{3.phage_trigger.md => 3.defense-systems_trigger.md} (100%)
create mode 100644 content/2.general-concepts/4.defense-systems_effector.md
create mode 100644 content/2.general-concepts/5.defense-systems-discovery.md
create mode 100644 content/2.general-concepts/6.defensive-domains.md
create mode 100644 content/2.general-concepts/7.MGE-defense-systems.md
create mode 100644 content/2.general-concepts/8.anti-defense-systems..md
diff --git a/content/2.general-concepts/0.index.md b/content/2.general-concepts/0.index.md
index e172046e..ab2bcf2d 100644
--- a/content/2.general-concepts/0.index.md
+++ b/content/2.general-concepts/0.index.md
@@ -1,8 +1,6 @@
---
title: General Concepts
-toc: true
+toc: False
layout: article
---
-
-This section is empty. You can help by adding to it.
\ No newline at end of file
diff --git a/content/2.general-concepts/3.phage_trigger.md b/content/2.general-concepts/3.defense-systems_trigger.md
similarity index 100%
rename from content/2.general-concepts/3.phage_trigger.md
rename to content/2.general-concepts/3.defense-systems_trigger.md
diff --git a/content/2.general-concepts/4.defense-systems_effector.md b/content/2.general-concepts/4.defense-systems_effector.md
new file mode 100644
index 00000000..2e5c1975
--- /dev/null
+++ b/content/2.general-concepts/4.defense-systems_effector.md
@@ -0,0 +1,12 @@
+---
+title: Abortive Infection
+layout: article
+toc: true
+---
+
+
+This section is empty. You can help by adding to it.
+
+
+## test article
+
diff --git a/content/2.general-concepts/5.defense-systems-discovery.md b/content/2.general-concepts/5.defense-systems-discovery.md
new file mode 100644
index 00000000..c5a661a2
--- /dev/null
+++ b/content/2.general-concepts/5.defense-systems-discovery.md
@@ -0,0 +1,7 @@
+---
+title: Discovery of defense systems
+layout: article
+toc: true
+---
+
+Defense systems are known since the birth of molecular biology. Then, more were discovered.
diff --git a/content/2.general-concepts/6.defensive-domains.md b/content/2.general-concepts/6.defensive-domains.md
new file mode 100644
index 00000000..08c06c5a
--- /dev/null
+++ b/content/2.general-concepts/6.defensive-domains.md
@@ -0,0 +1,7 @@
+---
+title: Defensive Domains
+layout: article
+toc: true
+---
+
+Among proteins involved in defense systems, a few domains appear to be frequent.
diff --git a/content/2.general-concepts/7.MGE-defense-systems.md b/content/2.general-concepts/7.MGE-defense-systems.md
new file mode 100644
index 00000000..4ee41cda
--- /dev/null
+++ b/content/2.general-concepts/7.MGE-defense-systems.md
@@ -0,0 +1,8 @@
+---
+title: Defense Systems and MGE
+layout: article
+toc: true
+---
+
+Defense systems help bacteria against mobile genetic elements (MGE), such as phage or plasmids.
+Yet, some defense systems favor certain MGE, or some MGE carry defense systems.
\ No newline at end of file
diff --git a/content/2.general-concepts/8.anti-defense-systems..md b/content/2.general-concepts/8.anti-defense-systems..md
new file mode 100644
index 00000000..05462fbf
--- /dev/null
+++ b/content/2.general-concepts/8.anti-defense-systems..md
@@ -0,0 +1,8 @@
+---
+title: Anti Defense Systems
+layout: article
+toc: true
+---
+
+Anti defense systems are systems that act against defense system, and thus help bypass the defense mechanism.
+
--
GitLab