From 469dbde56ebed4274e4147f24b348e8327603bfd Mon Sep 17 00:00:00 2001 From: jeanrjc <jean.cury@normalesup.org> Date: Tue, 19 Dec 2023 17:08:15 +0100 Subject: [PATCH] update text for refseq and structure --- content/4.refseq.md | 18 ++++++++++-------- content/5.structure.md | 19 +++++++++++++++++-- 2 files changed, 27 insertions(+), 10 deletions(-) diff --git a/content/4.refseq.md b/content/4.refseq.md index 6f982240..173a0870 100644 --- a/content/4.refseq.md +++ b/content/4.refseq.md @@ -5,19 +5,21 @@ navigation: icon: "mdi-database" --- +# RefSeq DB +On this page, you'll find results of DefenseFinder on the entire Bacterial RefSeq database of complete genome (last updated in 05/2022). +Each line of the table corresponds to a system. +<br> +You'll find plot of the distribution of defense system per type and per various taxonomical levels. These plots are updated automatically according to the search of filter you used. -Lorem ipsum dolor sit amet, consectetur adipiscing elit. -Cras lobortis nulla ac mauris aliquet lacinia. -Praesent viverra turpis orci, eget blandit ligula placerat nec. -Mauris a libero dui. Aenean sit amet quam at enim molestie tristique nec consequat libero. -Vestibulum rutrum tellus nec dui ornare, sit amet euismod velit faucibus. Aenean lectus mauris, convallis non dolor tincidunt, laoreet pulvinar diam. Maecenas at dignissim massa. Curabitur felis felis, maximus vitae mi non, condimentum rutrum urna. Phasellus consectetur libero sit amet iaculis dapibus. - - +<br><br> +::tip +One can search any text in the ***Search*** field or select a subset of the dataset based on a combination of condition in the ***Filter results*** field. +:: -Sed varius eget metus sed congue. Donec ut sodales lectus. Integer auctor maximus quam nec porta. Nulla urna magna, congue in sodales non, blandit eu lorem. Maecenas id massa sit amet libero elementum lobortis ut vel nibh. Integer sed ante eu tellus iaculis porttitor id at ante. Fusce at venenatis ante, et faucibus magna. Integer ut egestas diam. In vel blandit urna. Mauris nec tellus ut orci blandit consectetur. Nulla cursus tellus velit, vitae finibus lacus efficitur ut. +<br> ::refseq-db :: diff --git a/content/5.structure.md b/content/5.structure.md index 04124886..923ce4a9 100644 --- a/content/5.structure.md +++ b/content/5.structure.md @@ -5,10 +5,25 @@ navigation: icon: "mdi-database" --- +# Structures' prediction DB -Lorem ipsum dolor sit amet, consectetur adipiscing elit. Cras lobortis nulla ac mauris aliquet lacinia. Praesent viverra turpis orci, eget blandit ligula placerat nec. Mauris a libero dui. Aenean sit amet quam at enim molestie tristique nec consequat libero. Vestibulum rutrum tellus nec dui ornare, sit amet euismod velit faucibus. Aenean lectus mauris, convallis non dolor tincidunt, laoreet pulvinar diam. Maecenas at dignissim massa. Curabitur felis felis, maximus vitae mi non, condimentum rutrum urna. Phasellus consectetur libero sit amet iaculis dapibus. +In the following tables are various structures that were generated by Alphafold for all monomers, hetero- and homo-dimers for a given system. +In the page for each system is the structure for the monomers and real structure when it exists. + +Scores are reported for each structure. Average pLDDTs for monomer and IPTM+PTM and pDock scores for multimers. + +One can click on a given structure, it will show the structure colored by the pLDDT score at the amino-acid level, as well as the PAE matrix. +The structure can be downloaded when viewing the structure. + +Some structures could not be determined for technical reasons and are in the process of being generated again (column *Completed*). + +<br><br> + +::tip +One can search any text in the ***Search*** field or select a subset of the dataset based on a combination of condition in the ***Filter results*** field. +Columns with score can be filtered with the sliders to filter scores within a given range. +:: -Sed varius eget metus sed congue. Donec ut sodales lectus. Integer auctor maximus quam nec porta. Nulla urna magna, congue in sodales non, blandit eu lorem. Maecenas id massa sit amet libero elementum lobortis ut vel nibh. Integer sed ante eu tellus iaculis porttitor id at ante. Fusce at venenatis ante, et faucibus magna. Integer ut egestas diam. In vel blandit urna. Mauris nec tellus ut orci blandit consectetur. Nulla cursus tellus velit, vitae finibus lacus efficitur ut. ::structure-db :: \ No newline at end of file -- GitLab