From 4b6d29fa3204cc9cbef0c800204038d5c20601d5 Mon Sep 17 00:00:00 2001
From: ftesson <florian.tesson@pasteur.fr>
Date: Wed, 27 Sep 2023 17:42:06 +0200
Subject: [PATCH] change Rst_Paris to Paris
---
.../{rst_paris.md => paris.md} | 24 +++++++++----------
.../Distribution_Paris.svg} | 0
public/{rst_paris => paris}/PARIS_I.svg | 0
public/{rst_paris => paris}/PARIS_II.svg | 0
.../{rst_paris => paris}/PARIS_II_merge.svg | 0
public/{rst_paris => paris}/PARIS_I_merge.svg | 0
6 files changed, 12 insertions(+), 12 deletions(-)
rename content/2.defense-systems/{rst_paris.md => paris.md} (81%)
rename public/{rst_paris/Distribution_Rst_PARIS.svg => paris/Distribution_Paris.svg} (100%)
rename public/{rst_paris => paris}/PARIS_I.svg (100%)
rename public/{rst_paris => paris}/PARIS_II.svg (100%)
rename public/{rst_paris => paris}/PARIS_II_merge.svg (100%)
rename public/{rst_paris => paris}/PARIS_I_merge.svg (100%)
diff --git a/content/2.defense-systems/rst_paris.md b/content/2.defense-systems/paris.md
similarity index 81%
rename from content/2.defense-systems/rst_paris.md
rename to content/2.defense-systems/paris.md
index d8194bf5..8a1a858e 100644
--- a/content/2.defense-systems/rst_paris.md
+++ b/content/2.defense-systems/paris.md
@@ -1,5 +1,5 @@
---
-title: Rst_PARIS
+title: Paris
tableColumns:
article:
doi: 10.1016/j.chom.2022.02.018
@@ -10,8 +10,8 @@ tableColumns:
Effector: Unknown
---
-# Rst_PARIS
-# Rst_PARIS
+# Paris
+# Paris
## Description
PARIS (for Phage Anti-Restriction-Induced System) is a novel anti-phage system. PARIS is found in 4% of prokaryotic genomes. It comprises an ATPase associated with a DUF4435 protein, which can be found either as a two-gene cassette or a single-gene fusion (1).
@@ -20,39 +20,39 @@ This system relies on an unknown [Abortive infection](/general-concepts/abortive
## Example of genomic structure
-The Rst_PARIS system have been describe in a total of 4 subsystems.
+The Paris system have been describe in a total of 4 subsystems.
Here is some example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
PARIS_I subsystem in the genome of *Salmonella enterica* (GCF_020715485.1) is composed of 2 proteins: AAA_15 (WP_001520831.1)and, DUF4435 (WP_010989064.1).
-{max-width=750px}
+{max-width=750px}
PARIS_II subsystem in the genome of *Enterobacter cloacae* (GCF_023238665.1) is composed of 2 proteins: DUF4435 (WP_071830092.1)and, AAA_21 (WP_061772587.1).
-{max-width=750px}
+{max-width=750px}
PARIS_II_merge subsystem in the genome of *Desulfovibrio desulfuricans* (GCF_017815575.1) is composed of 1 protein: AAA_21_DUF4435 (WP_209818471.1).
-{max-width=750px}
+{max-width=750px}
PARIS_I_merge subsystem in the genome of *Sideroxydans lithotrophicus* (GCF_000025705.1) is composed of 1 protein: AAA_15_DUF4435 (WP_013030315.1).
## Distribution of the system among prokaryotes
-The Rst_PARIS system is present in a total of 463 different species.
+The Paris system is present in a total of 463 different species.
Among the 22k complete genomes of RefSeq, this system is present in 1145 genomes (5.0 %).
-{max-width=750px}
+{max-width=750px}
-*Proportion of genome encoding the Rst_PARIS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+*Proportion of genome encoding the Paris system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
## Experimental validation
-Rst_PARIS systems were experimentally validated using:
+Paris systems were experimentally validated using:
Subsystem Paris 1 with a system from *Escherichia coli (P4 loci)* in *Escherichia coli* has an anti-phage effect against Lambda, T4, CLB_P2, LF82_P8, Al505_P2, T7 (Rousset et al., 2022)
diff --git a/public/rst_paris/Distribution_Rst_PARIS.svg b/public/paris/Distribution_Paris.svg
similarity index 100%
rename from public/rst_paris/Distribution_Rst_PARIS.svg
rename to public/paris/Distribution_Paris.svg
diff --git a/public/rst_paris/PARIS_I.svg b/public/paris/PARIS_I.svg
similarity index 100%
rename from public/rst_paris/PARIS_I.svg
rename to public/paris/PARIS_I.svg
diff --git a/public/rst_paris/PARIS_II.svg b/public/paris/PARIS_II.svg
similarity index 100%
rename from public/rst_paris/PARIS_II.svg
rename to public/paris/PARIS_II.svg
diff --git a/public/rst_paris/PARIS_II_merge.svg b/public/paris/PARIS_II_merge.svg
similarity index 100%
rename from public/rst_paris/PARIS_II_merge.svg
rename to public/paris/PARIS_II_merge.svg
diff --git a/public/rst_paris/PARIS_I_merge.svg b/public/paris/PARIS_I_merge.svg
similarity index 100%
rename from public/rst_paris/PARIS_I_merge.svg
rename to public/paris/PARIS_I_merge.svg
--
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