diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 0ad516c6dfa93098ffed457f4050e51c98f95ee9..5c7542a075dbf5cf833e273dcbfdabbe798fac36 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -48,14 +48,14 @@ get-pfam: stage: get-data before_script: - apt update && apt install -y curl - - curl https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz --output pfam-data.gz + - curl https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz --output Pfam-A.hmm.dat.gz - ls -al script: - - gunzip pfam-data.gz - - ls -al pfam-data/ + - gunzip Pfam-A.hmm.dat.gz + - ls -al artifacts: paths: - - pfam-data/Pfam-A.hmm.dat + - Pfam-A.hmm.dat format-pfam: image: python:3.11 @@ -64,7 +64,7 @@ format-pfam: - "get-pfam" before_script: - pip install pandas - - mv pfam-data/Pfam-A.hmm.dat scripts + - mv Pfam-A.hmm.dat scripts/ script: - ./scripts/pfam-a-hmm-to-csv.py - mv ./scripts/Pfam-A.hmm.dat.csv content/_partial/pfam-a-hmm.csv