From 4f015343f2e0599eb0287ccac11d163e6939ef59 Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Wed, 4 Oct 2023 14:46:25 +0200
Subject: [PATCH] keep original name
---
.gitlab-ci.yml | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0ad516c6..5c7542a0 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -48,14 +48,14 @@ get-pfam:
stage: get-data
before_script:
- apt update && apt install -y curl
- - curl https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz --output pfam-data.gz
+ - curl https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pfam-A.hmm.dat.gz --output Pfam-A.hmm.dat.gz
- ls -al
script:
- - gunzip pfam-data.gz
- - ls -al pfam-data/
+ - gunzip Pfam-A.hmm.dat.gz
+ - ls -al
artifacts:
paths:
- - pfam-data/Pfam-A.hmm.dat
+ - Pfam-A.hmm.dat
format-pfam:
image: python:3.11
@@ -64,7 +64,7 @@ format-pfam:
- "get-pfam"
before_script:
- pip install pandas
- - mv pfam-data/Pfam-A.hmm.dat scripts
+ - mv Pfam-A.hmm.dat scripts/
script:
- ./scripts/pfam-a-hmm-to-csv.py
- mv ./scripts/Pfam-A.hmm.dat.csv content/_partial/pfam-a-hmm.csv
--
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