From 5039560ddc80a53f5d601a7d3fe21e9015eea6cc Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Tue, 28 Nov 2023 10:16:53 +0100
Subject: [PATCH] Use refinedUrl for pfam file
---
composables/useRefinedUrl.ts | 1 -
stores/pfam.ts | 4 +++-
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/composables/useRefinedUrl.ts b/composables/useRefinedUrl.ts
index 5dae55fb..057021a2 100644
--- a/composables/useRefinedUrl.ts
+++ b/composables/useRefinedUrl.ts
@@ -10,7 +10,6 @@ export function useRefinedUrl(url: string | Ref<string>) {
const _base = withLeadingSlash(
withTrailingSlash(useRuntimeConfig().app.baseURL)
);
- console.log(_base)
if (_base !== "/" && !sanitzedUrl.startsWith(_base)) {
return joinURL(_base, sanitzedUrl);
}
diff --git a/stores/pfam.ts b/stores/pfam.ts
index b6eb282c..d00394ed 100644
--- a/stores/pfam.ts
+++ b/stores/pfam.ts
@@ -3,6 +3,8 @@ import { ref } from 'vue'
import * as d3 from "d3";
import { unref } from 'vue'
+
+const { refinedUrl: refinedPfamUrl } = useRefinedUrl('/pfam-a-hmm.csv')
export interface PfamContent {
body: PfamHmm[]
}
@@ -24,7 +26,7 @@ export const usePfamStore = defineStore('pfam', () => {
async function initPfam() {
if (pfam.value.size < 1) {
- const data = await d3.csv("/pfam-a-hmm.csv");
+ const data = await d3.csv(refinedPfamUrl.value);
if (data.length > 1) {
pfam.value = new Map(data.map(pfam => {
return [pfam.AC.split(".")[0], { ...unref(pfam) }];
--
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