diff --git a/content/3.defense-systems/abia.md b/content/3.defense-systems/abia.md
index e0fba523c2727dcf763c753ebcc48e1f624fd104..7159f29a6affbe8bf196c1e58c418e6bc68b4400 100644
--- a/content/3.defense-systems/abia.md
+++ b/content/3.defense-systems/abia.md
@@ -53,7 +53,7 @@ Proportion of genome encoding the AbiA system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abia/AbiA_large__AbiA_large.pdb
+   - /abia/AbiA_large__AbiA_large.cif
 
 ---
 ::
@@ -64,8 +64,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /abia/AbiA_small.AbiA_small__AbiA_small.0.DF.pdb
-   - /abia/AbiA_small.AbiA_small__AbiA_SLATT.0.DF.pdb
+   - /abia/AbiA_small.AbiA_small__AbiA_small.0.DF.cif
+   - /abia/AbiA_small.AbiA_small__AbiA_SLATT.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abib.md b/content/3.defense-systems/abib.md
index 0b8fb135202cea0924fb3838917ce33b38a29c55..ee28e8af9f8fe212b7b534b105fdd267a102de7c 100644
--- a/content/3.defense-systems/abib.md
+++ b/content/3.defense-systems/abib.md
@@ -56,7 +56,7 @@ Proportion of genome encoding the AbiB system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abib/AbiB__AbiB.pdb
+   - /abib/AbiB__AbiB.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abic.md b/content/3.defense-systems/abic.md
index f0ad4e3f794777604045cdaed31f1b66ed8cdd4d..fb8584d57b9002558bed2d743a708cc49a3168c4 100644
--- a/content/3.defense-systems/abic.md
+++ b/content/3.defense-systems/abic.md
@@ -47,7 +47,7 @@ Proportion of genome encoding the AbiC system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abic/AbiC__AbiC.pdb
+   - /abic/AbiC__AbiC.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abid.md b/content/3.defense-systems/abid.md
index 6967065860963ad20a3609a84908db5f33dbdb00..6b581d3019f68e46e07893561fdea21e36ab1b6d 100644
--- a/content/3.defense-systems/abid.md
+++ b/content/3.defense-systems/abid.md
@@ -47,7 +47,7 @@ Proportion of genome encoding the AbiD system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abid/AbiD__AbiD.pdb
+   - /abid/AbiD__AbiD.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abie.md b/content/3.defense-systems/abie.md
index a7e060536909adf4724bb8642774c75230e986cd..a78e824cffd3ce9866232d3855ac96b003144de2 100644
--- a/content/3.defense-systems/abie.md
+++ b/content/3.defense-systems/abie.md
@@ -57,8 +57,8 @@ Proportion of genome encoding the AbiE system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abie/AbiE.AbiE__AbiEi.0.V.pdb
-   - /abie/AbiE.AbiE__AbiEii.0.V.pdb
+   - /abie/AbiE.AbiE__AbiEi.0.V.cif
+   - /abie/AbiE.AbiE__AbiEii.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abig.md b/content/3.defense-systems/abig.md
index f41b6ac64e903239cce84c9fe653a540048ca6d1..405e161c52c0140d9d475f7da11a5843b778d0d4 100644
--- a/content/3.defense-systems/abig.md
+++ b/content/3.defense-systems/abig.md
@@ -47,8 +47,8 @@ Proportion of genome encoding the AbiG system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abig/AbiG.AbiG__AbiGi.0.V.pdb
-   - /abig/AbiG.AbiG__AbiGii.0.V.pdb
+   - /abig/AbiG.AbiG__AbiGi.0.V.cif
+   - /abig/AbiG.AbiG__AbiGii.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abih.md b/content/3.defense-systems/abih.md
index 7b937eff4f742b64172685fd9a7c11ba540664f5..b895ad491095acf4d09078c6641803a7bf738de2 100644
--- a/content/3.defense-systems/abih.md
+++ b/content/3.defense-systems/abih.md
@@ -55,7 +55,7 @@ Proportion of genome encoding the AbiH system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abih/AbiH__AbiH.pdb
+   - /abih/AbiH__AbiH.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abii.md b/content/3.defense-systems/abii.md
index e2349fd4c702e07361f8df99ea38712b3a1b6ae7..716566795d48c674391dc0a5767325a7bc4d8d52 100644
--- a/content/3.defense-systems/abii.md
+++ b/content/3.defense-systems/abii.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the AbiI system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abii/AbiI__AbiI.pdb
+   - /abii/AbiI__AbiI.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abij.md b/content/3.defense-systems/abij.md
index 46b1b9ccc63ef100530352bf154cb16bcced3689..65a2c2632bf40f92ca6c2b01e3454275a021ae3d 100644
--- a/content/3.defense-systems/abij.md
+++ b/content/3.defense-systems/abij.md
@@ -46,7 +46,7 @@ Proportion of genome encoding the AbiJ system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abij/AbiJ__AbiJ.pdb
+   - /abij/AbiJ__AbiJ.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abik.md b/content/3.defense-systems/abik.md
index 5be8a8ce03f7680082f6fc4e830d0e4c9d065b50..52e54fccc348f3702f36f1697435f401a85872fd 100644
--- a/content/3.defense-systems/abik.md
+++ b/content/3.defense-systems/abik.md
@@ -47,7 +47,7 @@ Proportion of genome encoding the AbiK system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abik/AbiK__AbiK.pdb
+   - /abik/AbiK__AbiK.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abil.md b/content/3.defense-systems/abil.md
index c7bc8f3471908b8773c1abeafc0e97d9910cd55f..eae76d7abb9cb80d4fccb147bf757f8451d90d89 100644
--- a/content/3.defense-systems/abil.md
+++ b/content/3.defense-systems/abil.md
@@ -58,8 +58,8 @@ Proportion of genome encoding the AbiL system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abil/AbiL.AbiL__AbiLi.0.V.pdb
-   - /abil/AbiL.AbiL__AbiLii.0.V.pdb
+   - /abil/AbiL.AbiL__AbiLi.0.V.cif
+   - /abil/AbiL.AbiL__AbiLii.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abin.md b/content/3.defense-systems/abin.md
index 3eb41769266fbe4ac42b290280df58439ca2ef61..35fd7e7e054ef5ce3fea8cfd66b89b5647266b54 100644
--- a/content/3.defense-systems/abin.md
+++ b/content/3.defense-systems/abin.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the AbiN system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abin/AbiN__AbiN.pdb
+   - /abin/AbiN__AbiN.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abio.md b/content/3.defense-systems/abio.md
index 5392e139fd68c1990e3af97e1dd55db42b6a6e35..81bacf06b3c332e63430e4dd1861b1ae06aed8ad 100644
--- a/content/3.defense-systems/abio.md
+++ b/content/3.defense-systems/abio.md
@@ -46,7 +46,7 @@ Proportion of genome encoding the AbiO system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abio/AbiO__AbiO.pdb
+   - /abio/AbiO__AbiO.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abip2.md b/content/3.defense-systems/abip2.md
index e031cc4073cc47922581c4d64e536aa95a66c7a3..4ee71cab39489fee3639199238b00e7f5d80f170 100644
--- a/content/3.defense-systems/abip2.md
+++ b/content/3.defense-systems/abip2.md
@@ -47,7 +47,7 @@ Proportion of genome encoding the AbiP2 system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /abip2/AbiP2__AbiP2.pdb
+   - /abip2/AbiP2__AbiP2.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abiq.md b/content/3.defense-systems/abiq.md
index 361f32e14d4ed448da397f623e1d283825cf2bcf..c322ca514b03f2af1c3b3d56f440f4173c35adfd 100644
--- a/content/3.defense-systems/abiq.md
+++ b/content/3.defense-systems/abiq.md
@@ -47,7 +47,7 @@ Proportion of genome encoding the AbiQ system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abiq/AbiQ__AbiQ.pdb
+   - /abiq/AbiQ__AbiQ.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abir.md b/content/3.defense-systems/abir.md
index 277c7ef93c564d76ae147fa34b541a23e74c72b1..3bb994071c33ff22a3a519b385e17a63cc06af42 100644
--- a/content/3.defense-systems/abir.md
+++ b/content/3.defense-systems/abir.md
@@ -46,9 +46,9 @@ Proportion of genome encoding the AbiR system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abir/AbiR.AbiR__AbiRc.0.V.pdb
-   - /abir/AbiR.AbiR__AbiRb.0.V.pdb
-   - /abir/AbiR.AbiR__AbiRa.0.V.pdb
+   - /abir/AbiR.AbiR__AbiRc.0.V.cif
+   - /abir/AbiR.AbiR__AbiRb.0.V.cif
+   - /abir/AbiR.AbiR__AbiRa.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abit.md b/content/3.defense-systems/abit.md
index 4e4e2d8d8c9d6698cc8f6b6f1e5185cbc94668eb..f8456d7b0e0a11b6c0acd91ed17ee8505fad6af5 100644
--- a/content/3.defense-systems/abit.md
+++ b/content/3.defense-systems/abit.md
@@ -46,8 +46,8 @@ Proportion of genome encoding the AbiT system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abit/AbiT.AbiT__AbiTi.0.V.pdb
-   - /abit/AbiT.AbiT__AbiTii.0.V.pdb
+   - /abit/AbiT.AbiT__AbiTi.0.V.cif
+   - /abit/AbiT.AbiT__AbiTii.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abiu.md b/content/3.defense-systems/abiu.md
index d8b3722bd877390044747c9a37c5a4f7d2bace3f..b82a40a23cccb53dbcb5725d6c5e4b5b14f229f2 100644
--- a/content/3.defense-systems/abiu.md
+++ b/content/3.defense-systems/abiu.md
@@ -56,7 +56,7 @@ Proportion of genome encoding the AbiU system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abiu/AbiU__AbiU.pdb
+   - /abiu/AbiU__AbiU.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abiv.md b/content/3.defense-systems/abiv.md
index 89e356c4d5e664b68276060dcb0f34e9824146e2..7cfbeab8f1e759b77a82222dadaf1756c11c5eb9 100644
--- a/content/3.defense-systems/abiv.md
+++ b/content/3.defense-systems/abiv.md
@@ -46,7 +46,7 @@ Proportion of genome encoding the AbiV system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abiv/AbiV__AbiV.pdb
+   - /abiv/AbiV__AbiV.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/abiz.md b/content/3.defense-systems/abiz.md
index 68931ced9abfc86ad8e9963d9b0a4dad80a9ea40..50555aa04b01ae7607be5a2c4f4a760ccfd211c3 100644
--- a/content/3.defense-systems/abiz.md
+++ b/content/3.defense-systems/abiz.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /abiz/AbiZ__AbiZ.pdb
+   - /abiz/AbiZ__AbiZ.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/aditi.md b/content/3.defense-systems/aditi.md
index 5e539a1f01b50ac123641427e60a3530d0207782..c190d06ca5ca51de91e57743842eab326b2b8904 100644
--- a/content/3.defense-systems/aditi.md
+++ b/content/3.defense-systems/aditi.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the Aditi system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /aditi/Aditi.Aditi__DitB.0.V.pdb
-   - /aditi/Aditi.Aditi__DitA.0.V.pdb
+   - /aditi/Aditi.Aditi__DitB.0.V.cif
+   - /aditi/Aditi.Aditi__DitA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/avs.md b/content/3.defense-systems/avs.md
index ceed506756276b7fe8740f3f01e7f72036bbdcfc..2439688591a04bbef520363ceb65399baa9d191a 100644
--- a/content/3.defense-systems/avs.md
+++ b/content/3.defense-systems/avs.md
@@ -74,9 +74,9 @@ Proportion of genome encoding the Avs system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /avs/AVAST_I.AVAST_I__Avs1A.0.V.pdb
-   - /avs/AVAST_I.AVAST_I__Avs1C.0.V.pdb
-   - /avs/AVAST_I.AVAST_I__Avs1B.0.V.pdb
+   - /avs/AVAST_I.AVAST_I__Avs1A.0.V.cif
+   - /avs/AVAST_I.AVAST_I__Avs1C.0.V.cif
+   - /avs/AVAST_I.AVAST_I__Avs1B.0.V.cif
 
 ---
 ::
@@ -87,7 +87,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /avs/AVAST_II__Avs2A.pdb
+   - /avs/AVAST_II__Avs2A.cif
 
 ---
 ::
@@ -98,8 +98,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /avs/AVAST_III.AVAST_III__Avs3B.0.V.pdb
-   - /avs/AVAST_III.AVAST_III__Avs3A.0.V.pdb
+   - /avs/AVAST_III.AVAST_III__Avs3B.0.V.cif
+   - /avs/AVAST_III.AVAST_III__Avs3A.0.V.cif
 
 ---
 ::
@@ -110,7 +110,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /avs/AVAST_IV__Avs4A.pdb
+   - /avs/AVAST_IV__Avs4A.cif
 
 ---
 ::
@@ -121,7 +121,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /avs/AVAST_V__Avs5A.pdb
+   - /avs/AVAST_V__Avs5A.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/azaca.md b/content/3.defense-systems/azaca.md
index 50ea7855ae38e57f6974c9b980a608c583209fba..3b7206d9115f9e5ae6b092084eb84115e69cabc5 100644
--- a/content/3.defense-systems/azaca.md
+++ b/content/3.defense-systems/azaca.md
@@ -45,9 +45,9 @@ Proportion of genome encoding the Azaca system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /azaca/Azaca.Azaca__ZacA.0.V.pdb
-   - /azaca/Azaca.Azaca__ZacB.0.V.pdb
-   - /azaca/Azaca.Azaca__ZacC.0.V.pdb
+   - /azaca/Azaca.Azaca__ZacA.0.V.cif
+   - /azaca/Azaca.Azaca__ZacB.0.V.cif
+   - /azaca/Azaca.Azaca__ZacC.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/borvo.md b/content/3.defense-systems/borvo.md
index 457341c1adbb388067905ea0e9fd17c25dd9fef2..9a733dd640be311d0b5fcd4e8082c824977e234f 100644
--- a/content/3.defense-systems/borvo.md
+++ b/content/3.defense-systems/borvo.md
@@ -57,7 +57,7 @@ Proportion of genome encoding the Borvo system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /borvo/Borvo__BovA.pdb
+   - /borvo/Borvo__BovA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/brex.md b/content/3.defense-systems/brex.md
index 7b3a1e2b14c3a57bba8f2dc5804309c756142a41..e1f96037f85fc09b27b0a16b0abf7f0a936d7699 100644
--- a/content/3.defense-systems/brex.md
+++ b/content/3.defense-systems/brex.md
@@ -93,11 +93,11 @@ Proportion of genome encoding the BREX system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /brex/BREX_VI.BREX__brxHI.0.DF.pdb
-   - /brex/BREX_VI.BREX__brxD.0.DF.pdb
-   - /brex/BREX_II.BREX__pglY.0.DF.pdb
-   - /brex/BREX_II.BREX__pglX2.0.DF.pdb
-   - /brex/BREX_II.BREX__pglW.0.DF.pdb
+   - /brex/BREX_VI.BREX__brxHI.0.DF.cif
+   - /brex/BREX_VI.BREX__brxD.0.DF.cif
+   - /brex/BREX_II.BREX__pglY.0.DF.cif
+   - /brex/BREX_II.BREX__pglX2.0.DF.cif
+   - /brex/BREX_II.BREX__pglW.0.DF.cif
 
 ---
 ::
@@ -108,11 +108,11 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /brex/BREX_III.BREX__brxF.0.DF.pdb
-   - /brex/BREX_III.BREX__pglXI.0.DF.pdb
-   - /brex/BREX_V.BREX__brxHII.0.DF.pdb
-   - /brex/BREX_III.BREX__pglZ3.0.DF.pdb
-   - /brex/BREX_III.BREX__brxA.0.DF.pdb
+   - /brex/BREX_III.BREX__brxF.0.DF.cif
+   - /brex/BREX_III.BREX__pglXI.0.DF.cif
+   - /brex/BREX_V.BREX__brxHII.0.DF.cif
+   - /brex/BREX_III.BREX__pglZ3.0.DF.cif
+   - /brex/BREX_III.BREX__brxA.0.DF.cif
 
 ---
 ::
@@ -123,8 +123,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /brex/BREX_IV.BREX__brxP.0.DF.pdb
-   - /brex/BREX_IV.BREX__PglZ.0.DF.pdb
+   - /brex/BREX_IV.BREX__brxP.0.DF.cif
+   - /brex/BREX_IV.BREX__PglZ.0.DF.cif
 
 ---
 ::
@@ -135,8 +135,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /brex/BREX_V.BREX__brxHII.0.DF.pdb
-   - /brex/BREX_VI.BREX__pglZA.0.DF.pdb
+   - /brex/BREX_V.BREX__brxHII.0.DF.cif
+   - /brex/BREX_VI.BREX__pglZA.0.DF.cif
 
 ---
 ::
@@ -147,11 +147,11 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /brex/BREX_VI.BREX__brxHI.0.DF.pdb
-   - /brex/BREX_VI.BREX__brxD.0.DF.pdb
-   - /brex/BREX_VI.BREX__pglZA.0.DF.pdb
-   - /brex/BREX_VI.BREX_brxA.0.DF.pdb
-   - /brex/BREX_VI.BREX__brxE.0.DF.pdb
+   - /brex/BREX_VI.BREX__brxHI.0.DF.cif
+   - /brex/BREX_VI.BREX__brxD.0.DF.cif
+   - /brex/BREX_VI.BREX__pglZA.0.DF.cif
+   - /brex/BREX_VI.BREX_brxA.0.DF.cif
+   - /brex/BREX_VI.BREX__brxE.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/bsta.md b/content/3.defense-systems/bsta.md
index 882b9ead0b5a7267440e068244fe0afa0301299a..023957a97b953988707f4e7810e49ef9e203e62d 100644
--- a/content/3.defense-systems/bsta.md
+++ b/content/3.defense-systems/bsta.md
@@ -54,9 +54,9 @@ Proportion of genome encoding the BstA system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /bsta/BstA__BstA.pdb
-   - /bsta/BstA__BstA1.pdb
-   - /bsta/BstA__BstA2.pdb
+   - /bsta/BstA__BstA.cif
+   - /bsta/BstA__BstA1.cif
+   - /bsta/BstA__BstA2.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/bunzi.md b/content/3.defense-systems/bunzi.md
index 95b0915b725d8efc7e0b86661615c29f8a6460de..bb4e378c11c2f3c58f7ddc507385a7705d97c6a2 100644
--- a/content/3.defense-systems/bunzi.md
+++ b/content/3.defense-systems/bunzi.md
@@ -54,8 +54,8 @@ Proportion of genome encoding the Bunzi system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /bunzi/Bunzi.Bunzi__BnzB.0.V.pdb
-   - /bunzi/Bunzi.Bunzi__BnzA.0.V.pdb
+   - /bunzi/Bunzi.Bunzi__BnzB.0.V.cif
+   - /bunzi/Bunzi.Bunzi__BnzA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/butters_gp30_gp31.md b/content/3.defense-systems/butters_gp30_gp31.md
index 9dccad03cd8ed58bac1200f8ca628c8c863d124f..6295e2b698c1c4eddf5515c67ea4fa4686be601a 100644
--- a/content/3.defense-systems/butters_gp30_gp31.md
+++ b/content/3.defense-systems/butters_gp30_gp31.md
@@ -66,8 +66,8 @@ Proportion of genome encoding the Butters_gp30_gp31 system for the 14 phyla with
 ---
 height: 700
 dataUrls:
-   - /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp30.pdb
-   - /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp31.pdb
+   - /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp30.cif
+   - /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp31.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/butters_gp57r.md b/content/3.defense-systems/butters_gp57r.md
index 4efd9095390b089de045110e2cdddbb1f5e53e39..829d15afe2329d836eb5148584142c6e58019c51 100644
--- a/content/3.defense-systems/butters_gp57r.md
+++ b/content/3.defense-systems/butters_gp57r.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the Butters_gp57r system for the 14 phyla with mor
 ---
 height: 700
 dataUrls:
-   - /butters_gp57r/Butters_gp57r__gp57r.pdb
+   - /butters_gp57r/Butters_gp57r__gp57r.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/caprel.md b/content/3.defense-systems/caprel.md
index 2abb480ed9b312d57b58d0e946a6064c79437ad6..fe8b2e441f4fe498167818b8a529a950cf3c40af 100644
--- a/content/3.defense-systems/caprel.md
+++ b/content/3.defense-systems/caprel.md
@@ -57,7 +57,7 @@ Proportion of genome encoding the CapRel system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /caprel/CapRel__CapRel.pdb
+   - /caprel/CapRel__CapRel.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/cas.md b/content/3.defense-systems/cas.md
index 665e5b5cab13b0b4aa3fcbb98d2b473e9dfe9e2b..70fed3eeabb2f9ad32d9a4d1174829be6e1f46b0 100644
--- a/content/3.defense-systems/cas.md
+++ b/content/3.defense-systems/cas.md
@@ -1,55 +1,55 @@
----
-title: CRISPR-Cas
-layout: article
-tableColumns:
-    article:
-      doi: 10.1038/nrmicro3569
-      abstract: |
-        The evolution of CRISPR-cas loci, which encode adaptive immune systems in archaea and bacteria, involves rapid changes, in particular numerous rearrangements of the locus architecture and horizontal transfer of complete loci or individual modules. These dynamics complicate straightforward phylogenetic classification, but here we present an approach combining the analysis of signature protein families and features of the architecture of cas loci that unambiguously partitions most CRISPR-cas loci into distinct classes, types and subtypes. The new classification retains the overall structure of the previous version but is expanded to now encompass two classes, five types and 16 subtypes. The relative stability of the classification suggests that the most prevalent variants of CRISPR-Cas systems are already known. However, the existence of rare, currently unclassifiable variants implies that additional types and subtypes remain to be characterized.
----
-
-# CRISPR-Cas
-
-For the CRISPR-Cas system, a good place to start is the [Wikipedia page](https://en.wikipedia.org/wiki/CRISPR)
-
-## Example of genomic structure
-
-CRISPR-Cas systems have been classified in 6 different families :ref{doi=10.1038/s41579-019-0299-x}.
-Each family is composed of different subtypes. For example, Type I CRISPR is composed of 7 subtypes: I-A to I-G.
-
-Here is example of each of the 6 family found in the RefSeq database:
-
-![cas_class1-subtype-i-e](/cas/CAS_Class1-Subtype-I-E.svg){max-width=750px}
-
-The CAS_Class1-Subtype-I-E system in *Citrobacter sp. RHBSTW-00017* (GCF_013797615.1, NZ_CP056899) is composed of 8 proteins cas3_I_5 (WP_103284157.1) cas8e_I-E_1 (HV037_RS05730) cse2gr11_I-E_2 (HV037_RS05735) cas7_I-E_2 (HV037_RS05740) cas5_I-E_3 (HV037_RS05745) cas6e_I_II_III_IV_V_VI_1 (HV037_RS05750) cas1_I-E_1 (HV037_RS05755) cas2_I-E_2 (HV037_RS05760) 
-
-![cas_class2-subtype-ii-a](/cas/CAS_Class2-Subtype-II-A.svg){max-width=750px}
-
-The CAS_Class2-Subtype-II-A system in *Streptococcus agalactiae* (GCF_001190885.1, NZ_CP011329) is composed of 4 proteins cas9_II-A_II-B_II-C_3 (SAH002_RS04760) cas1_I_II_III_IV_V_VI_5 (SAH002_RS04765) cas2_I_II_III_IV_V_VI_6 (SAH002_RS04770) csn2_II-A_4 (SAH002_RS04775) 
-
-![cas_class1-subtype-iii-a](/cas/CAS_Class1-Subtype-III-A.svg){max-width=750px}
-
-The CAS_Class1-Subtype-III-A system in *Mycobacterium tuberculosis* (GCF_014900005.1, NZ_CP041828) is composed of 9 proteins cas2_I_II_III_IV_V_VI_5 (FPJ80_RS14760) cas1_I_II_III_IV_V_VI_8 (FPJ80_RS14765) csm6_III_2 (FPJ80_RS14770) csm5gr7_III-A_3 (FPJ80_RS14775) csm4gr5_III-A_3 (FPJ80_RS14780) csm3gr7_III-A_1 (FPJ80_RS14785) csm2gr11_III-A_1 (FPJ80_RS14790) cas10_III_7 (FPJ80_RS14795) cas6_I_II_III_IV_V_VI_15 (FPJ80_RS14800) 
-
-![cas_class1-subtype-iv-a](/cas/CAS_Class1-Subtype-IV-A.svg){max-width=750px}
-
-The CAS_Class1-Subtype-IV-A system in *Shigella flexneri* (GCF_022353685.1, NZ_CP054978) is composed of 5 proteins csf1gr8_IV-A_3 (WP_038989757.1) cas6e_I_II_III_IV_V_VI_3 (WP_038989755.1) csf4_IV-A_1 (WP_016947078.1) csf3gr5_IV-A_1 (WP_004181864.1) csf2gr7_IV-A_1 (WP_029505552.1) 
-
-
-![cas_class2-subtype-v-a](/cas/CAS_Class2-Subtype-V-A.svg){max-width=750px}
-
-The CAS_Class2-Subtype-V-A system in *Francisella tularensis* (GCF_001865695.1, NZ_CP016635) is composed of 4 proteins cas2_I_II_III_IV_V_VI_3 (N894_RS07580) cas1_I_II_III_IV_V_VI_1 (N894_RS07585) cas4_V_1 (N894_RS07590) cas12a_V-A_4 (N894_RS07595) 
-
-![cas_class2-subtype-vi-a](/cas/CAS_Class2-Subtype-VI-A.svg){max-width=750px}
-
-The CAS_Class2-Subtype-VI-A system in *Leptotrichia shahii* (GCF_008327825.1, NZ_AP019827) is composed of 3 proteins cas13a_VI-A_1 (F1564_RS00570) cas1_I_II_III_IV_V_VI_5 (F1564_RS00575) cas2_I_II_III_IV_V_VI_11 (F1564_RS00580) 
-
-## Distribution of the system among prokaryotes
-
-Among the 22,803 complete genomes of RefSeq, the AbiC is detected in 8581 genomes (37.63 %).
-
-The system was detected in 2905 different species.
-
-![cas](/cas/Distribution_Cas.svg){max-width=750px}
-
-Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.
+---
+title: CRISPR-Cas
+layout: article
+tableColumns:
+    article:
+      doi: 10.1038/nrmicro3569
+      abstract: |
+        The evolution of CRISPR-cas loci, which encode adaptive immune systems in archaea and bacteria, involves rapid changes, in particular numerous rearrangements of the locus architecture and horizontal transfer of complete loci or individual modules. These dynamics complicate straightforward phylogenetic classification, but here we present an approach combining the analysis of signature protein families and features of the architecture of cas loci that unambiguously partitions most CRISPR-cas loci into distinct classes, types and subtypes. The new classification retains the overall structure of the previous version but is expanded to now encompass two classes, five types and 16 subtypes. The relative stability of the classification suggests that the most prevalent variants of CRISPR-Cas systems are already known. However, the existence of rare, currently unclassifiable variants implies that additional types and subtypes remain to be characterized.
+---
+
+# CRISPR-Cas
+
+For the CRISPR-Cas system, a good place to start is the [Wikipedia page](https://en.wikipedia.org/wiki/CRISPR)
+
+## Example of genomic structure
+
+CRISPR-Cas systems have been classified in 6 different families :ref{doi=10.1038/s41579-019-0299-x}.
+Each family is composed of different subtypes. For example, Type I CRISPR is composed of 7 subtypes: I-A to I-G.
+
+Here is example of each of the 6 family found in the RefSeq database:
+
+![cas_class1-subtype-i-e](/cas/CAS_Class1-Subtype-I-E.svg){max-width=750px}
+
+The CAS_Class1-Subtype-I-E system in *Citrobacter sp. RHBSTW-00017* (GCF_013797615.1, NZ_CP056899) is composed of 8 proteins cas3_I_5 (WP_103284157.1) cas8e_I-E_1 (HV037_RS05730) cse2gr11_I-E_2 (HV037_RS05735) cas7_I-E_2 (HV037_RS05740) cas5_I-E_3 (HV037_RS05745) cas6e_I_II_III_IV_V_VI_1 (HV037_RS05750) cas1_I-E_1 (HV037_RS05755) cas2_I-E_2 (HV037_RS05760) 
+
+![cas_class2-subtype-ii-a](/cas/CAS_Class2-Subtype-II-A.svg){max-width=750px}
+
+The CAS_Class2-Subtype-II-A system in *Streptococcus agalactiae* (GCF_001190885.1, NZ_CP011329) is composed of 4 proteins cas9_II-A_II-B_II-C_3 (SAH002_RS04760) cas1_I_II_III_IV_V_VI_5 (SAH002_RS04765) cas2_I_II_III_IV_V_VI_6 (SAH002_RS04770) csn2_II-A_4 (SAH002_RS04775) 
+
+![cas_class1-subtype-iii-a](/cas/CAS_Class1-Subtype-III-A.svg){max-width=750px}
+
+The CAS_Class1-Subtype-III-A system in *Mycobacterium tuberculosis* (GCF_014900005.1, NZ_CP041828) is composed of 9 proteins cas2_I_II_III_IV_V_VI_5 (FPJ80_RS14760) cas1_I_II_III_IV_V_VI_8 (FPJ80_RS14765) csm6_III_2 (FPJ80_RS14770) csm5gr7_III-A_3 (FPJ80_RS14775) csm4gr5_III-A_3 (FPJ80_RS14780) csm3gr7_III-A_1 (FPJ80_RS14785) csm2gr11_III-A_1 (FPJ80_RS14790) cas10_III_7 (FPJ80_RS14795) cas6_I_II_III_IV_V_VI_15 (FPJ80_RS14800) 
+
+![cas_class1-subtype-iv-a](/cas/CAS_Class1-Subtype-IV-A.svg){max-width=750px}
+
+The CAS_Class1-Subtype-IV-A system in *Shigella flexneri* (GCF_022353685.1, NZ_CP054978) is composed of 5 proteins csf1gr8_IV-A_3 (WP_038989757.1) cas6e_I_II_III_IV_V_VI_3 (WP_038989755.1) csf4_IV-A_1 (WP_016947078.1) csf3gr5_IV-A_1 (WP_004181864.1) csf2gr7_IV-A_1 (WP_029505552.1) 
+
+
+![cas_class2-subtype-v-a](/cas/CAS_Class2-Subtype-V-A.svg){max-width=750px}
+
+The CAS_Class2-Subtype-V-A system in *Francisella tularensis* (GCF_001865695.1, NZ_CP016635) is composed of 4 proteins cas2_I_II_III_IV_V_VI_3 (N894_RS07580) cas1_I_II_III_IV_V_VI_1 (N894_RS07585) cas4_V_1 (N894_RS07590) cas12a_V-A_4 (N894_RS07595) 
+
+![cas_class2-subtype-vi-a](/cas/CAS_Class2-Subtype-VI-A.svg){max-width=750px}
+
+The CAS_Class2-Subtype-VI-A system in *Leptotrichia shahii* (GCF_008327825.1, NZ_AP019827) is composed of 3 proteins cas13a_VI-A_1 (F1564_RS00570) cas1_I_II_III_IV_V_VI_5 (F1564_RS00575) cas2_I_II_III_IV_V_VI_11 (F1564_RS00580) 
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the AbiC is detected in 8581 genomes (37.63 %).
+
+The system was detected in 2905 different species.
+
+![cas](/cas/Distribution_Cas.svg){max-width=750px}
+
+Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.
diff --git a/content/3.defense-systems/cbass.md b/content/3.defense-systems/cbass.md
index 029e52c7b9d7f8331b7f99984a91f5743ccef252..781d10e9d0b0efb16d67532d8a8d7ad21f3f2a90 100644
--- a/content/3.defense-systems/cbass.md
+++ b/content/3.defense-systems/cbass.md
@@ -62,8 +62,8 @@ Proportion of genome encoding the CBASS system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.pdb
-   - /cbass/CBASS_I.CBASS__TM.0.V.pdb
+   - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.cif
+   - /cbass/CBASS_I.CBASS__TM.0.V.cif
 
 ---
 ::
@@ -74,10 +74,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /cbass/CBASS_II.CBASS__Phospholipase.0.V.pdb
-   - /cbass/CBASS_II.CBASS__AG_E2_Prok-E2.0.V.pdb
-   - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.pdb
-   - /cbass/CBASS_II.CBASS__Jab.0.V.pdb
+   - /cbass/CBASS_II.CBASS__Phospholipase.0.V.cif
+   - /cbass/CBASS_II.CBASS__AG_E2_Prok-E2.0.V.cif
+   - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.cif
+   - /cbass/CBASS_II.CBASS__Jab.0.V.cif
 
 ---
 ::
@@ -88,11 +88,11 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /cbass/CBASS_III.CBASS__Endonuc_small.0.V.pdb
-   - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.pdb
-   - /cbass/CBASS_III.CBASS__bacHORMA_2.0.V.pdb
-   - /cbass/CBASS_III.CBASS__HORMA.0.V.pdb
-   - /cbass/CBASS_III.CBASS__TRIP13.0.V.pdb
+   - /cbass/CBASS_III.CBASS__Endonuc_small.0.V.cif
+   - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.cif
+   - /cbass/CBASS_III.CBASS__bacHORMA_2.0.V.cif
+   - /cbass/CBASS_III.CBASS__HORMA.0.V.cif
+   - /cbass/CBASS_III.CBASS__TRIP13.0.V.cif
 
 ---
 ::
@@ -103,11 +103,11 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /cbass/CBASS_IV.CBASS__QueC.0.DF.pdb
-   - /cbass/CBASS_IV.CBASS__TGT.0.DF.pdb
-   - /cbass/CBASS_IV.CBASS__Cyclase_SMODS.0.DF.pdb
-   - /cbass/CBASS_IV.CBASS__2TM_type_IV.0.DF.pdb
-   - /cbass/CBASS_IV.CBASS__OGG.0.DF.pdb
+   - /cbass/CBASS_IV.CBASS__QueC.0.DF.cif
+   - /cbass/CBASS_IV.CBASS__TGT.0.DF.cif
+   - /cbass/CBASS_IV.CBASS__Cyclase_SMODS.0.DF.cif
+   - /cbass/CBASS_IV.CBASS__2TM_type_IV.0.DF.cif
+   - /cbass/CBASS_IV.CBASS__OGG.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/charlie_gp32.md b/content/3.defense-systems/charlie_gp32.md
index 9c39da4053e97e1814ae6a9f971e70cf5e6e9e37..98e6d5c78aa12ba5d23f984da624f4e7542bddd6 100644
--- a/content/3.defense-systems/charlie_gp32.md
+++ b/content/3.defense-systems/charlie_gp32.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the Charlie_gp32 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /charlie_gp32/Charlie_gp32__gp32.pdb
+   - /charlie_gp32/Charlie_gp32__gp32.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dartg.md b/content/3.defense-systems/dartg.md
index 7b8a0e291eee26d8e6bed8a5d9981d03beb7f458..188564c34a2016a84bc4fcf1d6b62ab3e79170b7 100644
--- a/content/3.defense-systems/dartg.md
+++ b/content/3.defense-systems/dartg.md
@@ -59,8 +59,8 @@ Proportion of genome encoding the DarTG system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /dartg/DarTG.DarTG_DarT.0.DF.pdb
-   - /dartg/DarTG.DarTG_DarG.0.DF.pdb
+   - /dartg/DarTG.DarTG_DarT.0.DF.cif
+   - /dartg/DarTG.DarTG_DarG.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dazbog.md b/content/3.defense-systems/dazbog.md
index 6060fa8f1adcbbc6cd1f04255c5686343b5f1643..2f47c1a0b22981acff38147bd851ef4d27a6624d 100644
--- a/content/3.defense-systems/dazbog.md
+++ b/content/3.defense-systems/dazbog.md
@@ -54,8 +54,8 @@ Proportion of genome encoding the Dazbog system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /dazbog/Dazbog.Dazbog__DzbA.1.V.pdb
-   - /dazbog/Dazbog.Dazbog__DzbB.1.V.pdb
+   - /dazbog/Dazbog.Dazbog__DzbA.1.V.cif
+   - /dazbog/Dazbog.Dazbog__DzbB.1.V.cif
 
 ---
 ::
@@ -65,8 +65,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /dazbog/Dazbog.Dazbog__DzbA.1.V.pdb
-   - /dazbog/Dazbog.Dazbog__DzbB.1.V.pdb
+   - /dazbog/Dazbog.Dazbog__DzbA.1.V.cif
+   - /dazbog/Dazbog.Dazbog__DzbB.1.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dctpdeaminase.md b/content/3.defense-systems/dctpdeaminase.md
index 4f0235f7645f6c2df04486dc3d6caa91973e1f67..9deca9d9da826edf5b061fd5c83b2642c739037b 100644
--- a/content/3.defense-systems/dctpdeaminase.md
+++ b/content/3.defense-systems/dctpdeaminase.md
@@ -59,7 +59,7 @@ Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with mor
 ---
 height: 700
 dataUrls:
-   - /dctpdeaminase/dCTPdeaminase__dCTPdeaminase.pdb
+   - /dctpdeaminase/dCTPdeaminase__dCTPdeaminase.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/ddmde.md b/content/3.defense-systems/ddmde.md
index 2e3c30ecc1219219f98ed4b198c7e9eeb194dd6c..37075254b4b3afa36927d1a0b2977ad98ed0b616 100644
--- a/content/3.defense-systems/ddmde.md
+++ b/content/3.defense-systems/ddmde.md
@@ -41,8 +41,8 @@ Proportion of genome encoding the DdmDE system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /ddmde/DdmDE.DdmDE__DdmD.0.V.pdb
-   - /ddmde/DdmDE.DdmDE__DdmE.0.V.pdb
+   - /ddmde/DdmDE.DdmDE__DdmD.0.V.cif
+   - /ddmde/DdmDE.DdmDE__DdmE.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/detocs.md b/content/3.defense-systems/detocs.md
index 3ddb8843ec1f94a94588edd4a906fee88ddc2de7..fcbbaf0ef2be518091b6c4ca86889fbe6fd59e0b 100644
--- a/content/3.defense-systems/detocs.md
+++ b/content/3.defense-systems/detocs.md
@@ -74,9 +74,9 @@ Proportion of genome encoding the Detocs system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /detocs/Detocs__dtcC.pdb
-   - /detocs/Detocs__dtcB.pdb
-   - /detocs/Detocs__dtcA.pdb
+   - /detocs/Detocs__dtcC.cif
+   - /detocs/Detocs__dtcB.cif
+   - /detocs/Detocs__dtcA.cif
 
 ---
 ::
@@ -87,9 +87,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /detocs/Detocs_hydrolase__dtcC.pdb
-   - /detocs/Detocs_hydrolase__dtcB.pdb
-   - /detocs/Detocs_hydrolase__dtcA.pdb
+   - /detocs/Detocs_hydrolase__dtcC.cif
+   - /detocs/Detocs_hydrolase__dtcB.cif
+   - /detocs/Detocs_hydrolase__dtcA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dgtpase.md b/content/3.defense-systems/dgtpase.md
index 55ce9aafc69672a437bc8cde57c49ec4a95d07d4..d88cd781a312225c93fe65455211c5391b1aa971 100644
--- a/content/3.defense-systems/dgtpase.md
+++ b/content/3.defense-systems/dgtpase.md
@@ -54,7 +54,7 @@ Proportion of genome encoding the dGTPase system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /dgtpase/dGTPase__Sp_dGTPase.pdb
+   - /dgtpase/dGTPase__Sp_dGTPase.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/disarm.md b/content/3.defense-systems/disarm.md
index 100fac7a5421d1a43d89f9a6dcca76ab0aaa2807..690bad66b1bf9139b895ebc4490a37b4e65a9569 100644
--- a/content/3.defense-systems/disarm.md
+++ b/content/3.defense-systems/disarm.md
@@ -70,11 +70,11 @@ Proportion of genome encoding the DISARM system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /disarm/DISARM_2.DISARM__drmC.0.V.pdb
-   - /disarm/DISARM_2.DISARM__drmB.0.V.pdb
-   - /disarm/DISARM_1.DISARM__drmA.0.DF.pdb
-   - /disarm/DISARM_1.DISARM_1__drmMI.0.DF.pdb
-   - /disarm/DISARM_1.DISARM_1__drmD.0.DF.pdb
+   - /disarm/DISARM_2.DISARM__drmC.0.V.cif
+   - /disarm/DISARM_2.DISARM__drmB.0.V.cif
+   - /disarm/DISARM_1.DISARM__drmA.0.DF.cif
+   - /disarm/DISARM_1.DISARM_1__drmMI.0.DF.cif
+   - /disarm/DISARM_1.DISARM_1__drmD.0.DF.cif
 
 ---
 ::
@@ -85,11 +85,11 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /disarm/DISARM_1.DISARM__drmA.0.DF.pdb
-   - /disarm/DISARM_2.DISARM__drmC.0.V.pdb
-   - /disarm/DISARM_2.DISARM_2__drmMII.0.V.pdb
-   - /disarm/DISARM_2.DISARM__drmB.0.V.pdb
-   - /disarm/DISARM_2.DISARM_2__drmE.0.V.pdb
+   - /disarm/DISARM_1.DISARM__drmA.0.DF.cif
+   - /disarm/DISARM_2.DISARM__drmC.0.V.cif
+   - /disarm/DISARM_2.DISARM_2__drmMII.0.V.cif
+   - /disarm/DISARM_2.DISARM__drmB.0.V.cif
+   - /disarm/DISARM_2.DISARM_2__drmE.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dnd.md b/content/3.defense-systems/dnd.md
index 7319afe14797f4b26d06b2152e454260e31608e5..0dd0b921e64f4c2c755edb03265f3821b9b997b2 100644
--- a/content/3.defense-systems/dnd.md
+++ b/content/3.defense-systems/dnd.md
@@ -50,12 +50,12 @@ Proportion of genome encoding the Dnd system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.pdb
-   - /dnd/Dnd_ABCDE.Dnd__DndE.0.DF.pdb
-   - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.pdb
-   - /dnd/Dnd_ABCDE.Dnd__DndC.0.DF.pdb
-   - /dnd/Dnd_ABCDEFGH.Dnd__DndB.0.DF.pdb
-   - /dnd/Dnd_ABCDE.Dnd__DndA.0.DF.pdb
+   - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.cif
+   - /dnd/Dnd_ABCDE.Dnd__DndE.0.DF.cif
+   - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.cif
+   - /dnd/Dnd_ABCDE.Dnd__DndC.0.DF.cif
+   - /dnd/Dnd_ABCDEFGH.Dnd__DndB.0.DF.cif
+   - /dnd/Dnd_ABCDE.Dnd__DndA.0.DF.cif
 
 ---
 ::
@@ -66,14 +66,14 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /dnd/Dnd_ABCDE.Dnd__DndA.0.DF.pdb
-   - /dnd/Dnd_ABCDEFGH.Dnd__DndB.0.DF.pdb
-   - /dnd/Dnd_ABCDE.Dnd__DndC.0.DF.pdb
-   - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.pdb
-   - /dnd/Dnd_ABCDE.Dnd__DndE.0.DF.pdb
-   - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptH.0.DF.pdb
-   - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptG.0.DF.pdb
-   - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptF.0.DF.pdb
+   - /dnd/Dnd_ABCDE.Dnd__DndA.0.DF.cif
+   - /dnd/Dnd_ABCDEFGH.Dnd__DndB.0.DF.cif
+   - /dnd/Dnd_ABCDE.Dnd__DndC.0.DF.cif
+   - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.cif
+   - /dnd/Dnd_ABCDE.Dnd__DndE.0.DF.cif
+   - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptH.0.DF.cif
+   - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptG.0.DF.cif
+   - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptF.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dodola.md b/content/3.defense-systems/dodola.md
index a7c02de810cb57b03dc918fcfa25621ba7cb449e..fa8cda44b2523d74b2cff718c56e455f67b8057b 100644
--- a/content/3.defense-systems/dodola.md
+++ b/content/3.defense-systems/dodola.md
@@ -56,8 +56,8 @@ Proportion of genome encoding the Dodola system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /dodola/Dodola.Dodola__DolB.0.V.pdb
-   - /dodola/Dodola.Dodola__DolA.0.V.pdb
+   - /dodola/Dodola.Dodola__DolB.0.V.cif
+   - /dodola/Dodola.Dodola__DolA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dpd.md b/content/3.defense-systems/dpd.md
index 599a877b0885c60b84e541241e69c36293f6a326..7672897731436f33d88c18185afa3950bc350198 100644
--- a/content/3.defense-systems/dpd.md
+++ b/content/3.defense-systems/dpd.md
@@ -42,18 +42,18 @@ Proportion of genome encoding the Dpd system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /dpd/Dpd.Dpd__QueD.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdD.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdK.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdJ.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdI.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdH.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdG.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdF.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdE.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdB.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdA.0.DF.pdb
-   - /dpd/Dpd.Dpd__DpdC.0.DF.pdb
+   - /dpd/Dpd.Dpd__QueD.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdD.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdK.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdJ.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdI.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdH.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdG.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdF.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdE.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdB.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdA.0.DF.cif
+   - /dpd/Dpd.Dpd__DpdC.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/drt.md b/content/3.defense-systems/drt.md
index 20be54dfb9fad3f4b68735eee1e623505ef35b69..8255fad55504ead7ac6fbb56fde09a185f324bac 100644
--- a/content/3.defense-systems/drt.md
+++ b/content/3.defense-systems/drt.md
@@ -103,7 +103,7 @@ Proportion of genome encoding the DRT system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /drt/DRT6__DRT6.pdb
+   - /drt/DRT6__DRT6.cif
 
 ---
 ::
@@ -114,7 +114,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT7__DRT7.pdb
+   - /drt/DRT7__DRT7.cif
 
 ---
 ::
@@ -125,7 +125,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT8__DRT8.pdb
+   - /drt/DRT8__DRT8.cif
 
 ---
 ::
@@ -136,7 +136,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT9__DRT9.pdb
+   - /drt/DRT9__DRT9.cif
 
 ---
 ::
@@ -147,8 +147,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT_1.DRT_1__drt1b.0.V.pdb
-   - /drt/DRT_1.DRT_1__drt1a.0.V.pdb
+   - /drt/DRT_1.DRT_1__drt1b.0.V.cif
+   - /drt/DRT_1.DRT_1__drt1a.0.V.cif
 
 ---
 ::
@@ -159,7 +159,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT_2__drt2.pdb
+   - /drt/DRT_2__drt2.cif
 
 ---
 ::
@@ -170,8 +170,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT_3.DRT_3__drt3b.0.V.pdb
-   - /drt/DRT_3.DRT_3__drt3a.0.V.pdb
+   - /drt/DRT_3.DRT_3__drt3b.0.V.cif
+   - /drt/DRT_3.DRT_3__drt3a.0.V.cif
 
 ---
 ::
@@ -182,7 +182,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT_4__drt4.pdb
+   - /drt/DRT_4__drt4.cif
 
 ---
 ::
@@ -193,7 +193,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /drt/DRT_5__drt5.pdb
+   - /drt/DRT_5__drt5.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/druantia.md b/content/3.defense-systems/druantia.md
index 3f394efe06c07c44239d23b60c94d4bf421cbf8f..501ad2557a66a54d72fdb0bcb213a1fbcd46f380 100644
--- a/content/3.defense-systems/druantia.md
+++ b/content/3.defense-systems/druantia.md
@@ -53,11 +53,11 @@ Proportion of genome encoding the Druantia system for the 14 phyla with more tha
 ---
 height: 700
 dataUrls:
-   - /druantia/Druantia_I.Druantia_I__DruA.0.V.pdb
-   - /druantia/Druantia_I.Druantia_I__DruB.0.V.pdb
-   - /druantia/Druantia_I.Druantia_I__DruC.0.V.pdb
-   - /druantia/Druantia_I.Druantia_I__DruD.0.V.pdb
-   - /druantia/Druantia_I.Druantia__DruE.0.V.pdb
+   - /druantia/Druantia_I.Druantia_I__DruA.0.V.cif
+   - /druantia/Druantia_I.Druantia_I__DruB.0.V.cif
+   - /druantia/Druantia_I.Druantia_I__DruC.0.V.cif
+   - /druantia/Druantia_I.Druantia_I__DruD.0.V.cif
+   - /druantia/Druantia_I.Druantia__DruE.0.V.cif
 
 ---
 ::
@@ -68,10 +68,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /druantia/Druantia_II.Druantia_II__DruM.0.DF.pdb
-   - /druantia/Druantia_II.Druantia_II__DruF.0.DF.pdb
-   - /druantia/Druantia_II.Druantia_II__DruG.0.DF.pdb
-   - /druantia/Druantia_II.Druantia__DruE_2.0.DF.pdb
+   - /druantia/Druantia_II.Druantia_II__DruM.0.DF.cif
+   - /druantia/Druantia_II.Druantia_II__DruF.0.DF.cif
+   - /druantia/Druantia_II.Druantia_II__DruG.0.DF.cif
+   - /druantia/Druantia_II.Druantia__DruE_2.0.DF.cif
 
 ---
 ::
@@ -82,8 +82,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /druantia/Druantia_III.Druantia_III__DruH.0.DF.pdb
-   - /druantia/Druantia_III.Druantia__DruE_3.0.DF.pdb
+   - /druantia/Druantia_III.Druantia_III__DruH.0.DF.cif
+   - /druantia/Druantia_III.Druantia__DruE_3.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/dsr.md b/content/3.defense-systems/dsr.md
index 12d240d965100aa35078a8192688fb3ee9b33be6..7707a5fb889bfc76daabe7f61ee7e7f50cf95e42 100644
--- a/content/3.defense-systems/dsr.md
+++ b/content/3.defense-systems/dsr.md
@@ -50,7 +50,7 @@ Proportion of genome encoding the Dsr system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /dsr/Dsr_I__Dsr1.pdb
+   - /dsr/Dsr_I__Dsr1.cif
 
 ---
 ::
@@ -61,7 +61,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /dsr/Dsr_II__Dsr2.pdb
+   - /dsr/Dsr_II__Dsr2.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/eleos.md b/content/3.defense-systems/eleos.md
index 5370ae15f338c69362e2fbc30ce29bf654bce96e..e413458c556e5077ba0e8ca76444fbf991415310 100644
--- a/content/3.defense-systems/eleos.md
+++ b/content/3.defense-systems/eleos.md
@@ -47,8 +47,8 @@ Proportion of genome encoding the Eleos system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /eleos/Eleos.Eleos__LeoBC.0.V.pdb
-   - /eleos/Eleos.Eleos__LeoA.0.V.pdb
+   - /eleos/Eleos.Eleos__LeoBC.0.V.cif
+   - /eleos/Eleos.Eleos__LeoA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/fs_giy_yig.md b/content/3.defense-systems/fs_giy_yig.md
index ff41e10102fb903bac68426006d83fd6d0623234..81904d66ca7e3f0fcd00733b72bb97fb076866ec 100644
--- a/content/3.defense-systems/fs_giy_yig.md
+++ b/content/3.defense-systems/fs_giy_yig.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the FS_GIY_YIG system for the 14 phyla with more t
 ---
 height: 700
 dataUrls:
-   - /fs_giy_yig/FS_GIY_YIG__GIY_YIG.pdb
+   - /fs_giy_yig/FS_GIY_YIG__GIY_YIG.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/fs_hepn_tm.md b/content/3.defense-systems/fs_hepn_tm.md
index 0ccac65e2daedc46574ab45be5c292ead6a5d97c..14a2f2cb1e5a6ac6a09bde87c3547ef8af82b245 100644
--- a/content/3.defense-systems/fs_hepn_tm.md
+++ b/content/3.defense-systems/fs_hepn_tm.md
@@ -23,8 +23,8 @@ relevantAbstracts:
 ---
 height: 700
 dataUrls:
-   - /fs_hepn_tm/FS_HEPN_TM__TM.pdb
-   - /fs_hepn_tm/FS_HEPN_TM__HEPN.pdb
+   - /fs_hepn_tm/FS_HEPN_TM__TM.cif
+   - /fs_hepn_tm/FS_HEPN_TM__HEPN.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/fs_hp.md b/content/3.defense-systems/fs_hp.md
index e78e56584a8aff428ce114bf3a245fa719724665..29ae01a78a19503af7b13716792c93300421b433 100644
--- a/content/3.defense-systems/fs_hp.md
+++ b/content/3.defense-systems/fs_hp.md
@@ -52,7 +52,7 @@ Proportion of genome encoding the FS_HP system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /fs_hp/FS_HP__HP.pdb
+   - /fs_hp/FS_HP__HP.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/fs_hp_sdh_sah.md b/content/3.defense-systems/fs_hp_sdh_sah.md
index 5c0d6e5f105e785d94480c20e5264b6edbde0920..373542edbb6b8c409a8d7929802cbe1fd72a99fb 100644
--- a/content/3.defense-systems/fs_hp_sdh_sah.md
+++ b/content/3.defense-systems/fs_hp_sdh_sah.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the FS_HP_SDH_sah system for the 14 phyla with mor
 ---
 height: 700
 dataUrls:
-   - /fs_hp_sdh_sah/FS_HP_SDH_sah__SDH_sah.pdb
-   - /fs_hp_sdh_sah/FS_HP_SDH_sah__HP.pdb
+   - /fs_hp_sdh_sah/FS_HP_SDH_sah__SDH_sah.cif
+   - /fs_hp_sdh_sah/FS_HP_SDH_sah__HP.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/fs_hsdr_like.md b/content/3.defense-systems/fs_hsdr_like.md
index adaff9db295de729298b6c67ff9573b572bab133..4f07aeee7b3cd567ddfebdff0eba4f190482a0d8 100644
--- a/content/3.defense-systems/fs_hsdr_like.md
+++ b/content/3.defense-systems/fs_hsdr_like.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the FS_HsdR_like system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /fs_hsdr_like/FS_HsdR_like_HP.pdb
+   - /fs_hsdr_like/FS_HsdR_like_HP.cif
 
 ---
 ::
@@ -55,7 +55,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /fs_hsdr_like/FS_HsdR_like_HdrR.pdb
+   - /fs_hsdr_like/FS_HsdR_like_HdrR.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/fs_sma.md b/content/3.defense-systems/fs_sma.md
index 31120a93fb65a4f03f9402d2a484c625aec81c28..d9cce065dfb6ce6f7fc2fd586307825a9b60e718 100644
--- a/content/3.defense-systems/fs_sma.md
+++ b/content/3.defense-systems/fs_sma.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the FS_Sma system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /fs_sma/FS_Sma__Sma.pdb
+   - /fs_sma/FS_Sma__Sma.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gabija.md b/content/3.defense-systems/gabija.md
index d255ba39de99668111223960feb0fc84e49f10fd..04a0a6c8a03ec1da85f2b78319aff6657569a4e1 100644
--- a/content/3.defense-systems/gabija.md
+++ b/content/3.defense-systems/gabija.md
@@ -63,8 +63,8 @@ Proportion of genome encoding the Gabija system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gabija/Gabija.Gabija__GajA.0.V.pdb
-   - /gabija/Gabija.Gabija_GajB.0.V.pdb
+   - /gabija/Gabija.Gabija__GajA.0.V.cif
+   - /gabija/Gabija.Gabija_GajB.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_ape.md b/content/3.defense-systems/gao_ape.md
index a5da96e75d0148911731ee809a3c9568fbd66797..1cc620743bfc3faefdfd50536a51256737df1bef 100644
--- a/content/3.defense-systems/gao_ape.md
+++ b/content/3.defense-systems/gao_ape.md
@@ -56,7 +56,7 @@ Proportion of genome encoding the Gao_Ape system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_ape/Gao_Ape__ApeA.pdb
+   - /gao_ape/Gao_Ape__ApeA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_her.md b/content/3.defense-systems/gao_her.md
index 1f5cf399a88d7b8b50e4cd301df30314c990b9a3..665de18d5f43cd0458cd3f027a67f8dfb04109e2 100644
--- a/content/3.defense-systems/gao_her.md
+++ b/content/3.defense-systems/gao_her.md
@@ -49,8 +49,8 @@ Proportion of genome encoding the Gao_Her system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_her/Gao_Her_DUF.Gao_Her_DUF__DUF4297.0.V.pdb
-   - /gao_her/Gao_Her_DUF.Gao_Her_DUF__HerA_DUF.0.V.pdb
+   - /gao_her/Gao_Her_DUF.Gao_Her_DUF__DUF4297.0.V.cif
+   - /gao_her/Gao_Her_DUF.Gao_Her_DUF__HerA_DUF.0.V.cif
 
 ---
 ::
@@ -61,8 +61,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /gao_her/Gao_Her_SIR.Gao_Her_SIR__HerA_SIR2.0.V.pdb
-   - /gao_her/Gao_Her_SIR.Gao_Her_SIR__SIR2.0.V.pdb
+   - /gao_her/Gao_Her_SIR.Gao_Her_SIR__HerA_SIR2.0.V.cif
+   - /gao_her/Gao_Her_SIR.Gao_Her_SIR__SIR2.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_hhe.md b/content/3.defense-systems/gao_hhe.md
index 9d6f96e55a1c23e87c0886f70bd5654ece79965d..5b20fd748da07ee5cd39ff86b80c930c460c863b 100644
--- a/content/3.defense-systems/gao_hhe.md
+++ b/content/3.defense-systems/gao_hhe.md
@@ -54,7 +54,7 @@ Proportion of genome encoding the Gao_Hhe system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_hhe/Gao_Hhe__HheA.pdb
+   - /gao_hhe/Gao_Hhe__HheA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_iet.md b/content/3.defense-systems/gao_iet.md
index a2485e4d8aa2004087f7445109f881a9d29b471d..65c30c59c3a6a0c198cc9918e6c137bc6472c5de 100644
--- a/content/3.defense-systems/gao_iet.md
+++ b/content/3.defense-systems/gao_iet.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the Gao_Iet system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_iet/Gao_Iet.Gao_Iet__IetA.0.V.pdb
-   - /gao_iet/Gao_Iet.Gao_Iet__IetS.0.V.pdb
+   - /gao_iet/Gao_Iet.Gao_Iet__IetA.0.V.cif
+   - /gao_iet/Gao_Iet.Gao_Iet__IetS.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_mza.md b/content/3.defense-systems/gao_mza.md
index 738774165381629a50c335ae49a3c04d60202ec2..ff01df633362c7e8e00001690415c664d1b3fdc6 100644
--- a/content/3.defense-systems/gao_mza.md
+++ b/content/3.defense-systems/gao_mza.md
@@ -54,11 +54,11 @@ Proportion of genome encoding the Gao_Mza system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_mza/Gao_Mza.Gao_Mza__MzaE.0.V.pdb
-   - /gao_mza/Gao_Mza.Gao_Mza__MzaD.0.V.pdb
-   - /gao_mza/Gao_Mza.Gao_Mza__MzaC.0.V.pdb
-   - /gao_mza/Gao_Mza.Gao_Mza__MzaB.0.V.pdb
-   - /gao_mza/Gao_Mza.Gao_Mza__MzaA.0.V.pdb
+   - /gao_mza/Gao_Mza.Gao_Mza__MzaE.0.V.cif
+   - /gao_mza/Gao_Mza.Gao_Mza__MzaD.0.V.cif
+   - /gao_mza/Gao_Mza.Gao_Mza__MzaC.0.V.cif
+   - /gao_mza/Gao_Mza.Gao_Mza__MzaB.0.V.cif
+   - /gao_mza/Gao_Mza.Gao_Mza__MzaA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_ppl.md b/content/3.defense-systems/gao_ppl.md
index f88fe77ccc3fedadeca82a66c8827371ca77f580..0be59fdb30802298aaa2665a78f70130951a124a 100644
--- a/content/3.defense-systems/gao_ppl.md
+++ b/content/3.defense-systems/gao_ppl.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the Gao_Ppl system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_ppl/Gao_Ppl__PplA.pdb
+   - /gao_ppl/Gao_Ppl__PplA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_qat.md b/content/3.defense-systems/gao_qat.md
index ecdaaaf44836487fa8b5921678f2863a6225882c..6480be67e7c4c571ea6925c7dd0da3b2761f2cbe 100644
--- a/content/3.defense-systems/gao_qat.md
+++ b/content/3.defense-systems/gao_qat.md
@@ -45,10 +45,10 @@ Proportion of genome encoding the Gao_Qat system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_qat/Gao_Qat.Gao_Qat__QatA.0.V.pdb
-   - /gao_qat/Gao_Qat.Gao_Qat__QatB.0.V.pdb
-   - /gao_qat/Gao_Qat.Gao_Qat__QatC.0.V.pdb
-   - /gao_qat/Gao_Qat.Gao_Qat__QatD.0.V.pdb
+   - /gao_qat/Gao_Qat.Gao_Qat__QatA.0.V.cif
+   - /gao_qat/Gao_Qat.Gao_Qat__QatB.0.V.cif
+   - /gao_qat/Gao_Qat.Gao_Qat__QatC.0.V.cif
+   - /gao_qat/Gao_Qat.Gao_Qat__QatD.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_rl.md b/content/3.defense-systems/gao_rl.md
index 5f77504e503a5d0ed23d7e7265e1c5532d1bb6c3..48e9a4a13325d92d355119de4e2a9237cc4cdc70 100644
--- a/content/3.defense-systems/gao_rl.md
+++ b/content/3.defense-systems/gao_rl.md
@@ -56,10 +56,10 @@ Proportion of genome encoding the Gao_RL system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_rl/Gao_RL.Gao_RL__RL_A.0.V.pdb
-   - /gao_rl/Gao_RL.Gao_RL__RL_D.0.V.pdb
-   - /gao_rl/Gao_RL.Gao_RL__RL_B.0.V.pdb
-   - /gao_rl/Gao_RL.Gao_RL__RL_C.0.V.pdb
+   - /gao_rl/Gao_RL.Gao_RL__RL_A.0.V.cif
+   - /gao_rl/Gao_RL.Gao_RL__RL_D.0.V.cif
+   - /gao_rl/Gao_RL.Gao_RL__RL_B.0.V.cif
+   - /gao_rl/Gao_RL.Gao_RL__RL_C.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_tery.md b/content/3.defense-systems/gao_tery.md
index d6278bb7e0a13ed0ed869fa1d0f620bd27a75109..f9f854a49ca58af5ef06f20a40fc456d382bf091 100644
--- a/content/3.defense-systems/gao_tery.md
+++ b/content/3.defense-systems/gao_tery.md
@@ -44,9 +44,9 @@ Proportion of genome encoding the Gao_TerY system for the 14 phyla with more tha
 ---
 height: 700
 dataUrls:
-   - /gao_tery/Gao_TerY.Gao_TerY__TerYA.0.V.pdb
-   - /gao_tery/Gao_TerY.Gao_TerY__TerYB.0.V.pdb
-   - /gao_tery/Gao_TerY.Gao_TerY__TerYC.0.V.pdb
+   - /gao_tery/Gao_TerY.Gao_TerY__TerYA.0.V.cif
+   - /gao_tery/Gao_TerY.Gao_TerY__TerYB.0.V.cif
+   - /gao_tery/Gao_TerY.Gao_TerY__TerYC.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_tmn.md b/content/3.defense-systems/gao_tmn.md
index d4cc024cd703979a1485f22e0085ff5f482b0745..20937475b3366453253f6252322aa2be6ea99fd2 100644
--- a/content/3.defense-systems/gao_tmn.md
+++ b/content/3.defense-systems/gao_tmn.md
@@ -55,7 +55,7 @@ Proportion of genome encoding the Gao_Tmn system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_tmn/Gao_Tmn__TmnA.pdb
+   - /gao_tmn/Gao_Tmn__TmnA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gao_upx.md b/content/3.defense-systems/gao_upx.md
index f83ae2c2270e6cab79bde6d7554461681efb67cb..3ea6b9d54a7f32c4300991acab791fae14bd75e2 100644
--- a/content/3.defense-systems/gao_upx.md
+++ b/content/3.defense-systems/gao_upx.md
@@ -50,7 +50,7 @@ Proportion of genome encoding the Gao_Upx system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /gao_upx/Gao_Upx__UpxA.pdb
+   - /gao_upx/Gao_Upx__UpxA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gaps1.md b/content/3.defense-systems/gaps1.md
index 14b2de5033401b04ad33ec437076a23d5203899d..476d7eeee51f90ec13994732d90c7f9062f240ec 100644
--- a/content/3.defense-systems/gaps1.md
+++ b/content/3.defense-systems/gaps1.md
@@ -54,7 +54,7 @@ Proportion of genome encoding the GAPS1 system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /gaps1/GAPS1__GAPS1.pdb
+   - /gaps1/GAPS1__GAPS1.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gaps2.md b/content/3.defense-systems/gaps2.md
index 528a69aff98cac3aed978987e060fad502ee90e4..0ac62e66e25ece58789721069ec538ed1f8a354f 100644
--- a/content/3.defense-systems/gaps2.md
+++ b/content/3.defense-systems/gaps2.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the GAPS2 system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /gaps2/GAPS2__GAPS2.pdb
+   - /gaps2/GAPS2__GAPS2.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gaps4.md b/content/3.defense-systems/gaps4.md
index f1d8c8063cfb63da2adde21b3608f23da08957f5..cf34d5b59db4475d86d95378d6802a7b01e25e72 100644
--- a/content/3.defense-systems/gaps4.md
+++ b/content/3.defense-systems/gaps4.md
@@ -44,8 +44,8 @@ Proportion of genome encoding the GAPS4 system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /gaps4/GAPS4__GAPS4a.pdb
-   - /gaps4/GAPS4__GAPS4b.pdb
+   - /gaps4/GAPS4__GAPS4a.cif
+   - /gaps4/GAPS4__GAPS4b.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gaps6.md b/content/3.defense-systems/gaps6.md
index f22584600ede46531df38f1c8c44c2b94ce8bed8..74be54dbac271bd7c473f1551768d1efcd641d92 100644
--- a/content/3.defense-systems/gaps6.md
+++ b/content/3.defense-systems/gaps6.md
@@ -44,8 +44,8 @@ Proportion of genome encoding the GAPS6 system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /gaps6/GAPS6__GAPS6a.pdb
-   - /gaps6/GAPS6__GAPS6b.pdb
+   - /gaps6/GAPS6__GAPS6a.cif
+   - /gaps6/GAPS6__GAPS6b.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/gasdermin.md b/content/3.defense-systems/gasdermin.md
index 792766c7b1a806db741b0eb3038cd3d396fbfa82..194afdb147d52f4da782616c50b2dc6b651c3e03 100644
--- a/content/3.defense-systems/gasdermin.md
+++ b/content/3.defense-systems/gasdermin.md
@@ -57,12 +57,12 @@ Proportion of genome encoding the GasderMIN system for the 14 phyla with more th
 ---
 height: 700
 dataUrls:
-   - /gasdermin/GasderMIN__bGSDM.pdb
-   - /gasdermin/GasderMIN__Protease1.pdb
-   - /gasdermin/GasderMIN__Protease2.pdb
-   - /gasdermin/GasderMIN__ATPase.pdb
-   - /gasdermin/GasderMIN__Protease.pdb
-   - /gasdermin/GasderMIN__bGSDM1.pdb
+   - /gasdermin/GasderMIN__bGSDM.cif
+   - /gasdermin/GasderMIN__Protease1.cif
+   - /gasdermin/GasderMIN__Protease2.cif
+   - /gasdermin/GasderMIN__ATPase.cif
+   - /gasdermin/GasderMIN__Protease.cif
+   - /gasdermin/GasderMIN__bGSDM1.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/hachiman.md b/content/3.defense-systems/hachiman.md
index f2b53acd2828ae4289710511064a3b026cebb8f4..1da9281874b6590558800b1613a92539dd4e106a 100644
--- a/content/3.defense-systems/hachiman.md
+++ b/content/3.defense-systems/hachiman.md
@@ -51,8 +51,8 @@ Proportion of genome encoding the Hachiman system for the 14 phyla with more tha
 ---
 height: 700
 dataUrls:
-   - /hachiman/Hachiman.Hachiman__HamB.0.V.pdb
-   - /hachiman/Hachiman.Hachiman__HamA.0.V.pdb
+   - /hachiman/Hachiman.Hachiman__HamB.0.V.cif
+   - /hachiman/Hachiman.Hachiman__HamA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/hna.md b/content/3.defense-systems/hna.md
index 5134b8445469287661431a574baddde01de756d9..d87ab663466e93fa9912c62bd802ecd0d3f4a5c8 100644
--- a/content/3.defense-systems/hna.md
+++ b/content/3.defense-systems/hna.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the Hna system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /hna/Hna__Hna.pdb
+   - /hna/Hna__Hna.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/isg15-like.md b/content/3.defense-systems/isg15-like.md
index 242a75ede7ff65b75b9521cad4e527ab632b29e7..2e6fb72cef7aad9aecd23723242ec5f005ab32a1 100644
--- a/content/3.defense-systems/isg15-like.md
+++ b/content/3.defense-systems/isg15-like.md
@@ -45,10 +45,10 @@ Proportion of genome encoding the ISG15-like system for the 14 phyla with more t
 ---
 height: 700
 dataUrls:
-   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.pdb
+   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.cif
 
 ---
 ::
@@ -58,10 +58,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.pdb
+   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.cif
 
 ---
 ::
@@ -71,10 +71,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.pdb
+   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.cif
 
 ---
 ::
@@ -84,10 +84,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.pdb
+   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.cif
 
 ---
 ::
@@ -97,10 +97,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.pdb
-   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.pdb
+   - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.cif
+   - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/jukab.md b/content/3.defense-systems/jukab.md
index c153378bb60740e2c5ec2d679b0c33cc477cb4cf..61f8bb4ebdcac718c53573ed7508cd47fb054ae9 100644
--- a/content/3.defense-systems/jukab.md
+++ b/content/3.defense-systems/jukab.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the JukAB system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /jukab/JukAB__JukB.pdb
-   - /jukab/JukAB__JukA.pdb
+   - /jukab/JukAB__JukB.cif
+   - /jukab/JukAB__JukA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/kiwa.md b/content/3.defense-systems/kiwa.md
index 87a2bc70071a7fbfeaecfe26db24876c3d67e8a4..0c5ddce45dca0c1dc94ec0f856dffdc695e45444 100644
--- a/content/3.defense-systems/kiwa.md
+++ b/content/3.defense-systems/kiwa.md
@@ -56,8 +56,8 @@ Proportion of genome encoding the Kiwa system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /kiwa/Kiwa.Kiwa__KwaB.0.V.pdb
-   - /kiwa/Kiwa.Kiwa__KwaA.0.V.pdb
+   - /kiwa/Kiwa.Kiwa__KwaB.0.V.cif
+   - /kiwa/Kiwa.Kiwa__KwaA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/lamassu-fam.md b/content/3.defense-systems/lamassu-fam.md
index 8b5be3196a2c3b784279a92401f060687b9471d3..a7dfbe549119b0283e2dd4af3b51feac5bc14d0e 100644
--- a/content/3.defense-systems/lamassu-fam.md
+++ b/content/3.defense-systems/lamassu-fam.md
@@ -105,8 +105,8 @@ Proportion of genome encoding the Lamassu-Fam system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Amidase.Lamassu-Fam__LmuA_effector_Amidase.0.DF.pdb
-   - /lamassu-fam/Lamassu-Amidase.Lamassu-Fam__LmuB_SMC_Amidase.0.DF.pdb
+   - /lamassu-fam/Lamassu-Amidase.Lamassu-Fam__LmuA_effector_Amidase.0.DF.cif
+   - /lamassu-fam/Lamassu-Amidase.Lamassu-Fam__LmuB_SMC_Amidase.0.DF.cif
 
 ---
 ::
@@ -117,9 +117,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuA_effector_Cap4_nuclease_II.0.DF.pdb
-   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuC_acc_Cap4_nuclease.0.DF.pdb
-   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuB_SMC_Cap4_nuclease_II.0.DF.pdb
+   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuA_effector_Cap4_nuclease_II.0.DF.cif
+   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuC_acc_Cap4_nuclease.0.DF.cif
+   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuB_SMC_Cap4_nuclease_II.0.DF.cif
 
 ---
 ::
@@ -129,9 +129,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuA_effector_Cap4_nuclease.1.DF.pdb
-   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam_undetected_LmuC.1.DF.pdb
-   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuB_SMC_Cap4_nuclease.1.DF.pdb
+   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuA_effector_Cap4_nuclease.1.DF.cif
+   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam_undetected_LmuC.1.DF.cif
+   - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuB_SMC_Cap4_nuclease.1.DF.cif
 
 ---
 ::
@@ -142,9 +142,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuB_SMC_FMO.0.DF.pdb
-   - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuC_acc_FMO.0.DF.pdb
-   - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuA_effector_FMO.0.DF.pdb
+   - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuB_SMC_FMO.0.DF.cif
+   - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuC_acc_FMO.0.DF.cif
+   - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuA_effector_FMO.0.DF.cif
 
 ---
 ::
@@ -155,10 +155,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuA_effector_Hydrolase.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuA_effector_Protease.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuC_acc_hydrolase_protease.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuB_SMC_Hydrolase_protease.0.V.pdb
+   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuA_effector_Hydrolase.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuA_effector_Protease.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuC_acc_hydrolase_protease.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuB_SMC_Hydrolase_protease.0.V.cif
 
 ---
 ::
@@ -169,9 +169,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuA_effector_Mrr.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuC_acc_Mrr.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuB_SMC_Mrr.0.V.pdb
+   - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuA_effector_Mrr.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuC_acc_Mrr.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuB_SMC_Mrr.0.V.cif
 
 ---
 ::
@@ -182,12 +182,12 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuA_effector_PDDEXK.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuB_SMC_PDDEXK.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuC_acc_PDDEXK.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuC_acc_PDDEXK.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuB_SMC_PDDEXK.0.V.pdb
-   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuA_effector_PDDEXK.0.V.pdb
+   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuA_effector_PDDEXK.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuB_SMC_PDDEXK.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuC_acc_PDDEXK.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuC_acc_PDDEXK.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuB_SMC_PDDEXK.0.V.cif
+   - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuA_effector_PDDEXK.0.V.cif
 
 ---
 ::
@@ -198,9 +198,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuB_SMC_hypothetical.0.DF.pdb
-   - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuC_acc_hypothetical.0.DF.pdb
-   - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuA_effector_hypothetical.0.DF.pdb
+   - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuB_SMC_hypothetical.0.DF.cif
+   - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuC_acc_hypothetical.0.DF.cif
+   - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuA_effector_hypothetical.0.DF.cif
 
 ---
 ::
@@ -211,9 +211,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuB_SMC_Lipase.0.DF.pdb
-   - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuC_acc_Lipase.0.DF.pdb
-   - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuA_effector_Lipase.0.DF.pdb
+   - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuB_SMC_Lipase.0.DF.cif
+   - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuC_acc_Lipase.0.DF.cif
+   - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuA_effector_Lipase.0.DF.cif
 
 ---
 ::
@@ -224,9 +224,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuB_SMC_Sir2.0.DF.pdb
-   - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuC_acc_Sir2.0.DF.pdb
-   - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuA_effector_Sir2.0.DF.pdb
+   - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuB_SMC_Sir2.0.DF.cif
+   - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuC_acc_Sir2.0.DF.cif
+   - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuA_effector_Sir2.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/lit.md b/content/3.defense-systems/lit.md
index 55de976804c1e74c357977070ee3039f78ae196c..cf1d9bdbd0319afd775db591ecd685084523a933 100644
--- a/content/3.defense-systems/lit.md
+++ b/content/3.defense-systems/lit.md
@@ -60,7 +60,7 @@ Proportion of genome encoding the Lit system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /lit/Lit__Lit.pdb
+   - /lit/Lit__Lit.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/mads.md b/content/3.defense-systems/mads.md
index 4c44664de167394912f1eb40b457fdfcdf380d0f..59eac5c4cfe09638a4e31fc33c9b1c0c57188555 100644
--- a/content/3.defense-systems/mads.md
+++ b/content/3.defense-systems/mads.md
@@ -45,13 +45,13 @@ Proportion of genome encoding the MADS system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /mads/MADS__mad8.pdb
-   - /mads/MADS__mad7.pdb
-   - /mads/MADS__mad4.pdb
-   - /mads/MADS__mad3.pdb
-   - /mads/MADS__mad1.pdb
-   - /mads/MADS__mad5.pdb
-   - /mads/MADS__mad2.pdb
+   - /mads/MADS__mad8.cif
+   - /mads/MADS__mad7.cif
+   - /mads/MADS__mad4.cif
+   - /mads/MADS__mad3.cif
+   - /mads/MADS__mad1.cif
+   - /mads/MADS__mad5.cif
+   - /mads/MADS__mad2.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/menshen.md b/content/3.defense-systems/menshen.md
index 6678c81f9b1b900d1f9c93b7c420a997073f7063..aae29f8c159cd027ad90bbf973f968c054fceab7 100644
--- a/content/3.defense-systems/menshen.md
+++ b/content/3.defense-systems/menshen.md
@@ -56,9 +56,9 @@ Proportion of genome encoding the Menshen system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /menshen/Menshen.Menshen__NsnA.0.V.pdb
-   - /menshen/Menshen.Menshen__NsnB.0.V.pdb
-   - /menshen/Menshen.Menshen__NsnC.0.V.pdb
+   - /menshen/Menshen.Menshen__NsnA.0.V.cif
+   - /menshen/Menshen.Menshen__NsnB.0.V.cif
+   - /menshen/Menshen.Menshen__NsnC.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/mmb_gp29_gp30.md b/content/3.defense-systems/mmb_gp29_gp30.md
index 1985314ee990107d1e7284628f9535b8546d9366..7b214492437f2c73905fdd4d33207e478e358fba 100644
--- a/content/3.defense-systems/mmb_gp29_gp30.md
+++ b/content/3.defense-systems/mmb_gp29_gp30.md
@@ -50,8 +50,8 @@ Proportion of genome encoding the MMB_gp29_gp30 system for the 14 phyla with mor
 ---
 height: 700
 dataUrls:
-   - /mmb_gp29_gp30/MMB_gp29_gp30__gp29.pdb
-   - /mmb_gp29_gp30/MMB_gp29_gp30__gp30.pdb
+   - /mmb_gp29_gp30/MMB_gp29_gp30__gp29.cif
+   - /mmb_gp29_gp30/MMB_gp29_gp30__gp30.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/mok_hok_sok.md b/content/3.defense-systems/mok_hok_sok.md
index ddcf152d7224dc55a5c06c39387f9e28f7b064b8..48ce106a899436c9e28b5967e779a5608b7aa945 100644
--- a/content/3.defense-systems/mok_hok_sok.md
+++ b/content/3.defense-systems/mok_hok_sok.md
@@ -60,7 +60,7 @@ Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /mok_hok_sok/Mok_Hok_Sok__Hok.pdb
+   - /mok_hok_sok/Mok_Hok_Sok__Hok.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/mokosh.md b/content/3.defense-systems/mokosh.md
index 0c365bcb7d2633c4e48b2c1acee33a64ea6ead56..d52939e12af30acd7b311545f659fc503a466125 100644
--- a/content/3.defense-systems/mokosh.md
+++ b/content/3.defense-systems/mokosh.md
@@ -75,7 +75,7 @@ Proportion of genome encoding the Mokosh system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.pdb
+   - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
 
 ---
 ::
@@ -85,7 +85,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.pdb
+   - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
 
 ---
 ::
@@ -96,7 +96,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /mokosh/Mokosh_TypeII__MkoC.pdb
+   - /mokosh/Mokosh_TypeII__MkoC.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/nhi.md b/content/3.defense-systems/nhi.md
index 08d379f4c97ff3a865bf990ad11d882eb9f7e08b..c5c2b4c33c4b674e9b648dfeb1af081f58c583cf 100644
--- a/content/3.defense-systems/nhi.md
+++ b/content/3.defense-systems/nhi.md
@@ -57,7 +57,7 @@ Proportion of genome encoding the Nhi system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /nhi/Nhi__Nhi.pdb
+   - /nhi/Nhi__Nhi.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/nixi.md b/content/3.defense-systems/nixi.md
index ac4971e617461adf3981e2049f1a90b26c806488..1e07155a975e10ddefd6efbec62f14bcea6c30fa 100644
--- a/content/3.defense-systems/nixi.md
+++ b/content/3.defense-systems/nixi.md
@@ -52,7 +52,7 @@ Proportion of genome encoding the NixI system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /nixi/NixI__NixI.pdb
+   - /nixi/NixI__NixI.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/nlr.md b/content/3.defense-systems/nlr.md
index 9fb50ad8136bc22bd9165c263743a07408b4ef59..f3188e1392c43deb9c1825b27d018865acddd857 100644
--- a/content/3.defense-systems/nlr.md
+++ b/content/3.defense-systems/nlr.md
@@ -49,7 +49,7 @@ Proportion of genome encoding the NLR system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01.pdb
+   - /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01.cif
 
 ---
 ::
@@ -60,7 +60,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09.pdb
+   - /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/old_exonuclease.md b/content/3.defense-systems/old_exonuclease.md
index 8359ab39edf16a7e7034e67eeb1483ca735c335a..f1f4d4b7db85e320ff359d4979b01769bb4d9f72 100644
--- a/content/3.defense-systems/old_exonuclease.md
+++ b/content/3.defense-systems/old_exonuclease.md
@@ -55,7 +55,7 @@ Proportion of genome encoding the Old_exonuclease system for the 14 phyla with m
 ---
 height: 700
 dataUrls:
-   - /old_exonuclease/Old_exonuclease__Old_exonuclease.pdb
+   - /old_exonuclease/Old_exonuclease__Old_exonuclease.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/olokun.md b/content/3.defense-systems/olokun.md
index 4b48a3299328033b4b6ae275475b6c85a0d1b029..9c1b1d68aee751c0ab6c016f22820dae4f6aee31 100644
--- a/content/3.defense-systems/olokun.md
+++ b/content/3.defense-systems/olokun.md
@@ -61,8 +61,8 @@ Proportion of genome encoding the Olokun system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /olokun/Olokun.Olokun__OloA.0.V.pdb
-   - /olokun/Olokun.Olokun__OloB.0.V.pdb
+   - /olokun/Olokun.Olokun__OloA.0.V.cif
+   - /olokun/Olokun.Olokun__OloB.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pago.md b/content/3.defense-systems/pago.md
index 86caf2b4d68c8abbfa26c5b55fc2e837de149cbf..4a2e37c667638aae0e0cd91039213f6856791776 100644
--- a/content/3.defense-systems/pago.md
+++ b/content/3.defense-systems/pago.md
@@ -108,15 +108,15 @@ Proportion of genome encoding the pAgo system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /pago/pAgo__pAgo_LongA.pdb
-   - /pago/pAgo__pAgo_LongB.pdb
-   - /pago/pAgo__pAgo_S1A.pdb
-   - /pago/pAgo__SIR2APAZ.pdb
-   - /pago/pAgo__pAgo_S1B.pdb
-   - /pago/pAgo__XAPAZ.pdb
-   - /pago/pAgo__pAgo_S2B.pdb
-   - /pago/pAgo__TIRAPAZ.pdb
-   - /pago/pAgo__pAgo_SPARTA.pdb
+   - /pago/pAgo__pAgo_LongA.cif
+   - /pago/pAgo__pAgo_LongB.cif
+   - /pago/pAgo__pAgo_S1A.cif
+   - /pago/pAgo__SIR2APAZ.cif
+   - /pago/pAgo__pAgo_S1B.cif
+   - /pago/pAgo__XAPAZ.cif
+   - /pago/pAgo__pAgo_S2B.cif
+   - /pago/pAgo__TIRAPAZ.cif
+   - /pago/pAgo__pAgo_SPARTA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/panchino_gp28.md b/content/3.defense-systems/panchino_gp28.md
index b526b5280be0a07c35299f2ff4f210a1048fa301..176bb544bb656e0651d102f4472fc0b021e47863 100644
--- a/content/3.defense-systems/panchino_gp28.md
+++ b/content/3.defense-systems/panchino_gp28.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the Panchino_gp28 system for the 14 phyla with mor
 ---
 height: 700
 dataUrls:
-   - /panchino_gp28/Panchino_gp28__gp28.pdb
+   - /panchino_gp28/Panchino_gp28__gp28.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/paris.md b/content/3.defense-systems/paris.md
index 06b902d58e99044bd52bbf6c441f902838c77bb1..166b92efe5e377fe9c8cdf781f473d8952c839f9 100644
--- a/content/3.defense-systems/paris.md
+++ b/content/3.defense-systems/paris.md
@@ -56,8 +56,8 @@ Proportion of genome encoding the Paris system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /paris/PARIS_I.PARIS_I__AAA_15.0.V.pdb
-   - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.pdb
+   - /paris/PARIS_I.PARIS_I__AAA_15.0.V.cif
+   - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
 
 ---
 ::
@@ -68,8 +68,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.pdb
-   - /paris/PARIS_II.PARIS_II__AAA_21.0.V.pdb
+   - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
+   - /paris/PARIS_II.PARIS_II__AAA_21.0.V.cif
 
 ---
 ::
@@ -80,7 +80,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /paris/PARIS_II_merge__AAA_21_DUF4435.pdb
+   - /paris/PARIS_II_merge__AAA_21_DUF4435.cif
 
 ---
 ::
@@ -91,7 +91,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /paris/PARIS_I_merge__AAA_15_DUF4435.pdb
+   - /paris/PARIS_I_merge__AAA_15_DUF4435.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-lambda-1.md b/content/3.defense-systems/pd-lambda-1.md
index b09ecd2877fc075140e559bf53df7ab8d7e57fc7..2b6a6631c2d01b7370188a89af8916e6ce2c4f10 100644
--- a/content/3.defense-systems/pd-lambda-1.md
+++ b/content/3.defense-systems/pd-lambda-1.md
@@ -57,7 +57,7 @@ Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /pd-lambda-1/PD-Lambda-1__PD-Lambda-1.pdb
+   - /pd-lambda-1/PD-Lambda-1__PD-Lambda-1.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-lambda-2.md b/content/3.defense-systems/pd-lambda-2.md
index e39dc537560076a1bc30476a02532006e0f89c24..601154069a3a41b2d5d702ecf4b817e3ab8e6715 100644
--- a/content/3.defense-systems/pd-lambda-2.md
+++ b/content/3.defense-systems/pd-lambda-2.md
@@ -45,9 +45,9 @@ Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_C.0.V.pdb
-   - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_B.0.V.pdb
-   - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_A.0.V.pdb
+   - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_C.0.V.cif
+   - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_B.0.V.cif
+   - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_A.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-lambda-3.md b/content/3.defense-systems/pd-lambda-3.md
index 06508b699c61a0709ad3cf49ce1c723bbb0bc6fe..2ec3b7aafdd33e8c3843369c32b9e110744b3dee 100644
--- a/content/3.defense-systems/pd-lambda-3.md
+++ b/content/3.defense-systems/pd-lambda-3.md
@@ -54,9 +54,9 @@ Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_A.0.V.pdb
-   - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_B.0.V.pdb
-   - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_C.0.V.pdb
+   - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_A.0.V.cif
+   - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_B.0.V.cif
+   - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_C.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-lambda-4.md b/content/3.defense-systems/pd-lambda-4.md
index 7dc2f86c2e7c0f984897e4be79f427624010e3ff..cb1c78b452e0f1b401b4dced95398739c90a36c7 100644
--- a/content/3.defense-systems/pd-lambda-4.md
+++ b/content/3.defense-systems/pd-lambda-4.md
@@ -44,8 +44,8 @@ Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_B.0.V.pdb
-   - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_A.0.V.pdb
+   - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_B.0.V.cif
+   - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_A.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-lambda-5.md b/content/3.defense-systems/pd-lambda-5.md
index e19d460d57b2382f8e2933495b6ef58424236cea..c76b61dfbb73aa631d4df0375412fbe50b82b815 100644
--- a/content/3.defense-systems/pd-lambda-5.md
+++ b/content/3.defense-systems/pd-lambda-5.md
@@ -53,8 +53,8 @@ Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_A.0.V.pdb
-   - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_B.0.V.pdb
+   - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_A.0.V.cif
+   - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_B.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-lambda-6.md b/content/3.defense-systems/pd-lambda-6.md
index 76136adc5a07b6ad4491e85c807b47b0b499ee17..990adbad4a64cfcedcdae7c90272d9ea89f30f62 100644
--- a/content/3.defense-systems/pd-lambda-6.md
+++ b/content/3.defense-systems/pd-lambda-6.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /pd-lambda-6/PD-Lambda-6__PD-Lambda-6.pdb
+   - /pd-lambda-6/PD-Lambda-6__PD-Lambda-6.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-1.md b/content/3.defense-systems/pd-t4-1.md
index 5b22a9476fdca6aa0152d5b398e5cfedfe29d635..df7c7ef39e4446882ecfef4ce4650b6f647ce581 100644
--- a/content/3.defense-systems/pd-t4-1.md
+++ b/content/3.defense-systems/pd-t4-1.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-1/PD-T4-1__PD-T4-1.pdb
+   - /pd-t4-1/PD-T4-1__PD-T4-1.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-10.md b/content/3.defense-systems/pd-t4-10.md
index 18d40210275a1825e442407464b5510a3ee9a03b..98dce35ff8270fe2061c1a632f8d57f16b6e315f 100644
--- a/content/3.defense-systems/pd-t4-10.md
+++ b/content/3.defense-systems/pd-t4-10.md
@@ -54,8 +54,8 @@ Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more tha
 ---
 height: 700
 dataUrls:
-   - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_B.0.V.pdb
-   - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_A.0.V.pdb
+   - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_B.0.V.cif
+   - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_A.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-2.md b/content/3.defense-systems/pd-t4-2.md
index 1d2a11f3f4ea07a9faaec218c623e1d03b14f329..2d853db98bddca0c94f7bd51b8d2544e761211ea 100644
--- a/content/3.defense-systems/pd-t4-2.md
+++ b/content/3.defense-systems/pd-t4-2.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_A.0.DF.pdb
-   - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_B.0.DF.pdb
+   - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_A.0.DF.cif
+   - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_B.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-3.md b/content/3.defense-systems/pd-t4-3.md
index ea87f4c9edab550159f7d94772d0c5cdb21e99ab..debef120710c9486600bd8432321784be27baafc 100644
--- a/content/3.defense-systems/pd-t4-3.md
+++ b/content/3.defense-systems/pd-t4-3.md
@@ -55,7 +55,7 @@ Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-3/PD-T4-3__PD-T4-3.pdb
+   - /pd-t4-3/PD-T4-3__PD-T4-3.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-4.md b/content/3.defense-systems/pd-t4-4.md
index b7693c80be195ef3813a2a1dc55c1d4d79058695..32b8b6453a088f4eca7bde646378762dab6c5b79 100644
--- a/content/3.defense-systems/pd-t4-4.md
+++ b/content/3.defense-systems/pd-t4-4.md
@@ -53,8 +53,8 @@ Proportion of genome encoding the PD-T4-4 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-4/PD-T4-4.PD-T4-4__PD-T4-4_B.0.V.pdb
-   - /pd-t4-4/PD-T4-4.PD-T4-4__PD-T4-4_A.0.V.pdb
+   - /pd-t4-4/PD-T4-4.PD-T4-4__PD-T4-4_B.0.V.cif
+   - /pd-t4-4/PD-T4-4.PD-T4-4__PD-T4-4_A.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-5.md b/content/3.defense-systems/pd-t4-5.md
index 37d1c023580c420a35f70457fc19a30a57562130..6aecd831077e96f7d3aca3e50dc7dd7006f2f965 100644
--- a/content/3.defense-systems/pd-t4-5.md
+++ b/content/3.defense-systems/pd-t4-5.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the PD-T4-5 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-5/PD-T4-5__PD-T4-5.pdb
+   - /pd-t4-5/PD-T4-5__PD-T4-5.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-6.md b/content/3.defense-systems/pd-t4-6.md
index 6c419ca3c3e0d9faab432357d41bedffa3dbd3d8..16599207f0091122f835466f0c07785e80cad9ad 100644
--- a/content/3.defense-systems/pd-t4-6.md
+++ b/content/3.defense-systems/pd-t4-6.md
@@ -54,7 +54,7 @@ Proportion of genome encoding the PD-T4-6 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-6/PD-T4-6__PD-T4-6.pdb
+   - /pd-t4-6/PD-T4-6__PD-T4-6.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-7.md b/content/3.defense-systems/pd-t4-7.md
index 0cb3aa714bd2dcae7f343b64229b09d2ddd75bbc..8f82d3c2b2491c51bbfa88b8df0175952f8d4da6 100644
--- a/content/3.defense-systems/pd-t4-7.md
+++ b/content/3.defense-systems/pd-t4-7.md
@@ -56,7 +56,7 @@ Proportion of genome encoding the PD-T4-7 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-7/PD-T4-7__PD-T4-7.pdb
+   - /pd-t4-7/PD-T4-7__PD-T4-7.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-8.md b/content/3.defense-systems/pd-t4-8.md
index dbc3b0c15f129f179d0bdf692438272f59ec64b9..9180716197242b6c01cef156b0d2e336a5626d5e 100644
--- a/content/3.defense-systems/pd-t4-8.md
+++ b/content/3.defense-systems/pd-t4-8.md
@@ -54,7 +54,7 @@ Proportion of genome encoding the PD-T4-8 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-8/PD-T4-8__PD-T4-8.pdb
+   - /pd-t4-8/PD-T4-8__PD-T4-8.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t4-9.md b/content/3.defense-systems/pd-t4-9.md
index ee080a2e737825adbc6c747fa6914dd1175ca98d..b423677625834cd9c937352d78c1b944b6f993e6 100644
--- a/content/3.defense-systems/pd-t4-9.md
+++ b/content/3.defense-systems/pd-t4-9.md
@@ -45,9 +45,9 @@ Proportion of genome encoding the PD-T4-9 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_A.0.V.pdb
-   - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_B.0.V.pdb
-   - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_C.0.V.pdb
+   - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_A.0.V.cif
+   - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_B.0.V.cif
+   - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_C.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t7-1.md b/content/3.defense-systems/pd-t7-1.md
index 2ea58ee02e5744d24963a01264b43e641f81d158..777fd7b60b66e634e367fea12c8b7a40d3a1e4eb 100644
--- a/content/3.defense-systems/pd-t7-1.md
+++ b/content/3.defense-systems/pd-t7-1.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the PD-T7-1 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t7-1/PD-T7-1__PD-T7-1.pdb
+   - /pd-t7-1/PD-T7-1__PD-T7-1.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t7-2.md b/content/3.defense-systems/pd-t7-2.md
index 39a84ff68af800543e83fcf8fa14febcf62937fd..dff84b3212928f1c6dca9cd3c6228b5346e46baf 100644
--- a/content/3.defense-systems/pd-t7-2.md
+++ b/content/3.defense-systems/pd-t7-2.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the PD-T7-2 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t7-2/PD-T7-2.PD-T7-2__PD-T7-2_B.0.V.pdb
-   - /pd-t7-2/PD-T7-2.PD-T7-2__PD-T7-2_A.0.V.pdb
+   - /pd-t7-2/PD-T7-2.PD-T7-2__PD-T7-2_B.0.V.cif
+   - /pd-t7-2/PD-T7-2.PD-T7-2__PD-T7-2_A.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t7-3.md b/content/3.defense-systems/pd-t7-3.md
index 7ff456880e326c1614610a8838b15ba1ef2dcbf5..07118a7794d3e433a40f00ee30e4c9e4b6694457 100644
--- a/content/3.defense-systems/pd-t7-3.md
+++ b/content/3.defense-systems/pd-t7-3.md
@@ -54,7 +54,7 @@ Proportion of genome encoding the PD-T7-3 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t7-3/PD-T7-3__PD-T7-3.pdb
+   - /pd-t7-3/PD-T7-3__PD-T7-3.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t7-4.md b/content/3.defense-systems/pd-t7-4.md
index 3d1085e1fa3b6b21af83e80cf09393e526483eb4..6b80d4a5152fc0f94c1a73c769ac98e5495a5d80 100644
--- a/content/3.defense-systems/pd-t7-4.md
+++ b/content/3.defense-systems/pd-t7-4.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the PD-T7-4 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t7-4/PD-T7-4__PD-T7-4.pdb
+   - /pd-t7-4/PD-T7-4__PD-T7-4.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pd-t7-5.md b/content/3.defense-systems/pd-t7-5.md
index 34db3bbbe946ddea53572045d4eb8d972d681245..1b97e8c5508038ee94db612f28f61b1974956453 100644
--- a/content/3.defense-systems/pd-t7-5.md
+++ b/content/3.defense-systems/pd-t7-5.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the PD-T7-5 system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pd-t7-5/PD-T7-5__PD-T7-5.pdb
+   - /pd-t7-5/PD-T7-5__PD-T7-5.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pfiat.md b/content/3.defense-systems/pfiat.md
index ebfbe341b25dd6064bb69e24007b4c346205f5b7..4f3afebf045e64b0d1100aa0fd448bf94f328c52 100644
--- a/content/3.defense-systems/pfiat.md
+++ b/content/3.defense-systems/pfiat.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the PfiAT system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /pfiat/PfiAT.PfiAT__PfiA.0.V.pdb
-   - /pfiat/PfiAT.PfiAT__PfiT.0.V.pdb
+   - /pfiat/PfiAT.PfiAT__PfiA.0.V.cif
+   - /pfiat/PfiAT.PfiAT__PfiT.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pif.md b/content/3.defense-systems/pif.md
index 0785faf05c6861d2859f15714acbb9b659a8b3f7..83bd65b93f05f2c1568fac909eee2cf31aaba0aa 100644
--- a/content/3.defense-systems/pif.md
+++ b/content/3.defense-systems/pif.md
@@ -59,8 +59,8 @@ Proportion of genome encoding the Pif system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /pif/Pif.Pif__PifA.0.V.pdb
-   - /pif/Pif.Pif__PifC.0.V.pdb
+   - /pif/Pif.Pif__PifA.0.V.cif
+   - /pif/Pif.Pif__PifC.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/prrc.md b/content/3.defense-systems/prrc.md
index 8e7517d5b2ef542595c1500ae9e30cf5984b84b1..040189252632e7468ff78ffe1e090d66b9829b2e 100644
--- a/content/3.defense-systems/prrc.md
+++ b/content/3.defense-systems/prrc.md
@@ -59,8 +59,8 @@ Proportion of genome encoding the PrrC system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /prrc/PrrC__EcoprrI.pdb
-   - /prrc/PrrC__PrrC.pdb
+   - /prrc/PrrC__EcoprrI.cif
+   - /prrc/PrrC__PrrC.cif
 
 ---
 ::
@@ -71,8 +71,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /prrc/RM__Type_I_S.pdb
-   - /prrc/RM__Type_I_REases.pdb
+   - /prrc/RM__Type_I_S.cif
+   - /prrc/RM__Type_I_REases.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/psyrta.md b/content/3.defense-systems/psyrta.md
index 6e1d4fa90cb02b37ae2040ea07575b1c98f28ee8..d6752dd09de33c1382fdb025619971e7422749a4 100644
--- a/content/3.defense-systems/psyrta.md
+++ b/content/3.defense-systems/psyrta.md
@@ -75,8 +75,8 @@ Proportion of genome encoding the PsyrTA system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /psyrta/PsyrTA.PsyrTA__PsyrT.0.V.pdb
-   - /psyrta/PsyrTA.PsyrTA__PsyrA.0.V.pdb
+   - /psyrta/PsyrTA.PsyrTA__PsyrT.0.V.cif
+   - /psyrta/PsyrTA.PsyrTA__PsyrA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/pycsar.md b/content/3.defense-systems/pycsar.md
index 6a6469e03f6a87a4bc8c86fd8afbc71e7fcb50e0..77c07d531f1d905a2b23506aed2d8a23c9d5d77e 100644
--- a/content/3.defense-systems/pycsar.md
+++ b/content/3.defense-systems/pycsar.md
@@ -47,8 +47,8 @@ Proportion of genome encoding the Pycsar system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /pycsar/Pycsar.Pycsar__AG_cyclase.1.V.pdb
-   - /pycsar/Pycsar.CBASS__TIR.0.V.pdb
+   - /pycsar/Pycsar.Pycsar__AG_cyclase.1.V.cif
+   - /pycsar/Pycsar.CBASS__TIR.0.V.cif
 
 ---
 ::
@@ -58,8 +58,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /pycsar/Pycsar.CBASS_TM.1.V.pdb
-   - /pycsar/Pycsar.Pycsar__AG_cyclase.1.V.pdb
+   - /pycsar/Pycsar.CBASS_TM.1.V.cif
+   - /pycsar/Pycsar.Pycsar__AG_cyclase.1.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/radar.md b/content/3.defense-systems/radar.md
index 0510cece62846a97ce2d8cd51f66d0068b0cb50f..fe2b0087ef3f2daafc62d428048f48fcf184273d 100644
--- a/content/3.defense-systems/radar.md
+++ b/content/3.defense-systems/radar.md
@@ -103,8 +103,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /radar/radar_I.radar_I__rdrB_I.0.V.pdb
-   - /radar/radar_I.radar_I__rdrA_I.0.V.pdb
+   - /radar/radar_I.radar_I__rdrB_I.0.V.cif
+   - /radar/radar_I.radar_I__rdrA_I.0.V.cif
 
 ---
 ::
@@ -115,9 +115,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /radar/radar_II.radar_II__rdrC_II.0.V.pdb
-   - /radar/radar_II.radar_II__rdrB_II.0.V.pdb
-   - /radar/radar_II.radar_II__rdrA_II.0.V.pdb
+   - /radar/radar_II.radar_II__rdrC_II.0.V.cif
+   - /radar/radar_II.radar_II__rdrB_II.0.V.cif
+   - /radar/radar_II.radar_II__rdrA_II.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/retron.md b/content/3.defense-systems/retron.md
index a9daa09d4f12b765cae926ddddeac12a81e19ed9..c70ac99b9a78de7481b501f16e46f99c2f203eb3 100644
--- a/content/3.defense-systems/retron.md
+++ b/content/3.defense-systems/retron.md
@@ -132,7 +132,7 @@ Proportion of genome encoding the Retron system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /retron/RT_Ec67_SLATT.AbiA__AbiA_small_SLATT.Ec57.V.pdb
+   - /retron/RT_Ec67_SLATT.AbiA__AbiA_small_SLATT.Ec57.V.cif
 
 ---
 ::
@@ -142,7 +142,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/DRT_3.DRT_3__drt3a.0.V.pdb
+   - /retron/DRT_3.DRT_3__drt3a.0.V.cif
 
 ---
 ::
@@ -153,7 +153,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_II.Retron_II__NDT.Ec73.V.pdb
+   - /retron/Retron_II.Retron_II__NDT.Ec73.V.cif
 
 ---
 ::
@@ -163,7 +163,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_II.Retron_II__NDT.Ec73.V.pdb
+   - /retron/Retron_II.Retron_II__NDT.Ec73.V.cif
 
 ---
 ::
@@ -174,8 +174,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_III.Retron_III__PRTase.0.DF.pdb
-   - /retron/Retron_III.Retron_III__WH.0.DF.pdb
+   - /retron/Retron_III.Retron_III__PRTase.0.DF.cif
+   - /retron/Retron_III.Retron_III__WH.0.DF.cif
 
 ---
 ::
@@ -185,7 +185,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_III.Retron_III__PRTase_WH.1.DF.pdb
+   - /retron/Retron_III.Retron_III__PRTase_WH.1.DF.cif
 
 ---
 ::
@@ -196,7 +196,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_IV.Retron_IV__2TM.Ec48.V.pdb
+   - /retron/Retron_IV.Retron_IV__2TM.Ec48.V.cif
 
 ---
 ::
@@ -207,8 +207,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_I_A.Retron__RT_Tot.Ec83.V.pdb
-   - /retron/Retron_I_A.Retron_I_A__ATPase_TypeIA.Vc95.V.pdb
+   - /retron/Retron_I_A.Retron__RT_Tot.Ec83.V.cif
+   - /retron/Retron_I_A.Retron_I_A__ATPase_TypeIA.Vc95.V.cif
 
 ---
 ::
@@ -218,8 +218,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_I_A.Retron_I_A__ATPase_TypeIA.Vc95.V.pdb
-   - /retron/Retron_I_A.Retron__RT_Tot.Ec83.V.pdb
+   - /retron/Retron_I_A.Retron_I_A__ATPase_TypeIA.Vc95.V.cif
+   - /retron/Retron_I_A.Retron__RT_Tot.Ec83.V.cif
 
 ---
 ::
@@ -230,7 +230,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_I_B.Retron_I_B__ATPase_TOPRIM_COG3593.Eco8.V.pdb
+   - /retron/Retron_I_B.Retron_I_B__ATPase_TOPRIM_COG3593.Eco8.V.cif
 
 ---
 ::
@@ -241,8 +241,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_VI.Retron_VI__HTH.0.DF.pdb
-   - /retron/Retron_VI.Possible_Retron_VI__SP.0.DF.pdb
+   - /retron/Retron_VI.Retron_VI__HTH.0.DF.cif
+   - /retron/Retron_VI.Possible_Retron_VI__SP.0.DF.cif
 
 ---
 ::
@@ -253,7 +253,7 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /retron/Retron_VII_2.Retron_VII_2__DUF3800.0.DF.pdb
+   - /retron/Retron_VII_2.Retron_VII_2__DUF3800.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rexab.md b/content/3.defense-systems/rexab.md
index e02d441418ed5bbbd8440ebae7842bf240ad7f12..30f479b3c7030a161e89729891283106062a10fc 100644
--- a/content/3.defense-systems/rexab.md
+++ b/content/3.defense-systems/rexab.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the RexAB system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /rexab/RexAB.RexAB_RexB.0.V.pdb
-   - /rexab/RexAB.RexAB_RexA.0.V.pdb
+   - /rexab/RexAB.RexAB_RexB.0.V.cif
+   - /rexab/RexAB.RexAB_RexA.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rloc.md b/content/3.defense-systems/rloc.md
index 273ede0650dd61c323cdd499ae56f542061fb4a8..e8deba6f5e4f57738b15d3ff267ec5dc3d731dd1 100644
--- a/content/3.defense-systems/rloc.md
+++ b/content/3.defense-systems/rloc.md
@@ -46,7 +46,7 @@ Proportion of genome encoding the RloC system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /rloc/RloC__RloC.pdb
+   - /rloc/RloC__RloC.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rnlab.md b/content/3.defense-systems/rnlab.md
index 282a78756dedac59ad14895f3a01d3ee792821d9..6195477cbca0e5b05909cb39b85b4e899a3aa119 100644
--- a/content/3.defense-systems/rnlab.md
+++ b/content/3.defense-systems/rnlab.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the RnlAB system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /rnlab/RnlAB.RnlAB__RnlA.0.DF.pdb
-   - /rnlab/RnlAB.RnlAB__RnlB.0.DF.pdb
+   - /rnlab/RnlAB.RnlAB__RnlA.0.DF.cif
+   - /rnlab/RnlAB.RnlAB__RnlB.0.DF.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rosmerta.md b/content/3.defense-systems/rosmerta.md
index 04f1ec00e94dda32b3b3ee5bb7312b1b6c3a4033..db5e5087b8b04fa2d442a5765ee52ee61cc7b11f 100644
--- a/content/3.defense-systems/rosmerta.md
+++ b/content/3.defense-systems/rosmerta.md
@@ -56,8 +56,8 @@ Proportion of genome encoding the RosmerTA system for the 14 phyla with more tha
 ---
 height: 700
 dataUrls:
-   - /rosmerta/RosmerTA.RosmerTA__RmrA.0.V.pdb
-   - /rosmerta/RosmerTA.RosmerTA__RmrT.0.V.pdb
+   - /rosmerta/RosmerTA.RosmerTA__RmrA.0.V.cif
+   - /rosmerta/RosmerTA.RosmerTA__RmrT.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rst_2tm_1tm_tir.md b/content/3.defense-systems/rst_2tm_1tm_tir.md
index 8766ba22d5c0c4efcaecbfe8b9a85621844e578f..0d680fdb6cd56c27e8309843d0690d262cdabe16 100644
--- a/content/3.defense-systems/rst_2tm_1tm_tir.md
+++ b/content/3.defense-systems/rst_2tm_1tm_tir.md
@@ -58,9 +58,9 @@ Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with m
 ---
 height: 700
 dataUrls:
-   - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_2TM_TIR.0.V.pdb
-   - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_1TM_TIR.0.V.pdb
-   - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_TIR_tm.0.V.pdb
+   - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_2TM_TIR.0.V.cif
+   - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_1TM_TIR.0.V.cif
+   - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_TIR_tm.0.V.cif
 
 
 ## Experimental validation
diff --git a/content/3.defense-systems/rst_3hp.md b/content/3.defense-systems/rst_3hp.md
index 795e2eeae6befb457d9d865206ea48729a1c4e69..57095826a08c1418b9dc32ed5acad0e2d385e91e 100644
--- a/content/3.defense-systems/rst_3hp.md
+++ b/content/3.defense-systems/rst_3hp.md
@@ -56,9 +56,9 @@ Proportion of genome encoding the Rst_3HP system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /rst_3hp/Rst_3HP.Rst_3HP__Hp1.0.V.pdb
-   - /rst_3hp/Rst_3HP.Rst_3HP__Hp3.0.V.pdb
-   - /rst_3hp/Rst_3HP.Rst_3HP__Hp2.0.V.pdb
+   - /rst_3hp/Rst_3HP.Rst_3HP__Hp1.0.V.cif
+   - /rst_3hp/Rst_3HP.Rst_3HP__Hp3.0.V.cif
+   - /rst_3hp/Rst_3HP.Rst_3HP__Hp2.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rst_duf4238.md b/content/3.defense-systems/rst_duf4238.md
index cda9b5f62f47b3a4215a5cdb2876bf751e543548..9a74d7eff36241542eec51eef31827c4b7224cbd 100644
--- a/content/3.defense-systems/rst_duf4238.md
+++ b/content/3.defense-systems/rst_duf4238.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the Rst_DUF4238 system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /rst_duf4238/Rst_DUF4238__DUF4238_Pers.pdb
+   - /rst_duf4238/Rst_DUF4238__DUF4238_Pers.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rst_gop_beta_cll.md b/content/3.defense-systems/rst_gop_beta_cll.md
index 6a49f423bb46d1c65e5e813f54322060f5163de1..1d287bb43a7dacff67ba37c7669694729d288c9c 100644
--- a/content/3.defense-systems/rst_gop_beta_cll.md
+++ b/content/3.defense-systems/rst_gop_beta_cll.md
@@ -45,9 +45,9 @@ Proportion of genome encoding the Rst_gop_beta_cll system for the 14 phyla with
 ---
 height: 700
 dataUrls:
-   - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__cll.0.V.pdb
-   - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__gop.0.V.pdb
-   - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__beta.0.V.pdb
+   - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__cll.0.V.cif
+   - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__gop.0.V.cif
+   - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__beta.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rst_helicaseduf2290.md b/content/3.defense-systems/rst_helicaseduf2290.md
index 647094f8feef1ff79f4859a4f33e60e5dca3b313..448f56264a1d3e8e4426b8d37e7c1a651bb7dc5e 100644
--- a/content/3.defense-systems/rst_helicaseduf2290.md
+++ b/content/3.defense-systems/rst_helicaseduf2290.md
@@ -58,8 +58,8 @@ Proportion of genome encoding the Rst_HelicaseDUF2290 system for the 14 phyla wi
 ---
 height: 700
 dataUrls:
-   - /rst_helicaseduf2290/Rst_HelicaseDUF2290.Rst_HelicaseDUF2290__DUF2290.0.V.pdb
-   - /rst_helicaseduf2290/Rst_HelicaseDUF2290.Rst_HelicaseDUF2290__Helicase.0.V.pdb
+   - /rst_helicaseduf2290/Rst_HelicaseDUF2290.Rst_HelicaseDUF2290__DUF2290.0.V.cif
+   - /rst_helicaseduf2290/Rst_HelicaseDUF2290.Rst_HelicaseDUF2290__Helicase.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rst_hydrolase-3tm.md b/content/3.defense-systems/rst_hydrolase-3tm.md
index ecf86fe5e727228f431a08f14c16890a7d91e332..82bbc3fb1f742c48696f1190eb13f124c0f17836 100644
--- a/content/3.defense-systems/rst_hydrolase-3tm.md
+++ b/content/3.defense-systems/rst_hydrolase-3tm.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the Rst_Hydrolase-3Tm system for the 14 phyla with
 ---
 height: 700
 dataUrls:
-   - /rst_hydrolase-3tm/Rst_Hydrolase-Tm.Rst_Hydrolase-Tm__Hydrolase.0.V.pdb
-   - /rst_hydrolase-3tm/Rst_Hydrolase-Tm.Rst_Hydrolase-Tm__Hydrolase-Tm.0.V.pdb
+   - /rst_hydrolase-3tm/Rst_Hydrolase-Tm.Rst_Hydrolase-Tm__Hydrolase.0.V.cif
+   - /rst_hydrolase-3tm/Rst_Hydrolase-Tm.Rst_Hydrolase-Tm__Hydrolase-Tm.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rst_rt-nitrilase-tm.md b/content/3.defense-systems/rst_rt-nitrilase-tm.md
index c11121196d227b4cb4dc9a6160ad41ac8bcc2e81..8668f08920e7174a41140a1d0de485022c3b7847 100644
--- a/content/3.defense-systems/rst_rt-nitrilase-tm.md
+++ b/content/3.defense-systems/rst_rt-nitrilase-tm.md
@@ -45,8 +45,8 @@ Proportion of genome encoding the Rst_RT-nitrilase-Tm system for the 14 phyla wi
 ---
 height: 700
 dataUrls:
-   - /rst_rt-nitrilase-tm/Rst_RT-Tm.Rst_RT-Tm__RT-Tm.0.V.pdb
-   - /rst_rt-nitrilase-tm/Rst_RT-Tm.Rst_RT-Tm__RT.0.V.pdb
+   - /rst_rt-nitrilase-tm/Rst_RT-Tm.Rst_RT-Tm__RT-Tm.0.V.cif
+   - /rst_rt-nitrilase-tm/Rst_RT-Tm.Rst_RT-Tm__RT.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/rst_tir-nlr.md b/content/3.defense-systems/rst_tir-nlr.md
index f6df789af21a927ccae5ea159f7898a5b1428ea9..7f2a5457cff0bc89ebd197ac7c4c0d2f061267a1 100644
--- a/content/3.defense-systems/rst_tir-nlr.md
+++ b/content/3.defense-systems/rst_tir-nlr.md
@@ -58,7 +58,7 @@ Proportion of genome encoding the Rst_TIR-NLR system for the 14 phyla with more
 ---
 height: 700
 dataUrls:
-   - /rst_tir-nlr/Rst_TIR-NLR__TIR.pdb
+   - /rst_tir-nlr/Rst_TIR-NLR__TIR.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/sanata.md b/content/3.defense-systems/sanata.md
index f43723ec6ea99fd65de5e5308754710263d2d68a..db49c97c83a2d027e6b635db4b41e6790f76427c 100644
--- a/content/3.defense-systems/sanata.md
+++ b/content/3.defense-systems/sanata.md
@@ -57,8 +57,8 @@ Proportion of genome encoding the SanaTA system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /sanata/SanaTA.SanaTA_SanaA.0.V.pdb
-   - /sanata/SanaTA.SanaTA_SanaT.0.V.pdb
+   - /sanata/SanaTA.SanaTA_SanaA.0.V.cif
+   - /sanata/SanaTA.SanaTA_SanaT.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/sefir.md b/content/3.defense-systems/sefir.md
index 2a75ce4ab25874de6fdbc3f2375a94f7334baadb..d83d29ee6dd6368364f6c0b02df137546107b920 100644
--- a/content/3.defense-systems/sefir.md
+++ b/content/3.defense-systems/sefir.md
@@ -61,7 +61,7 @@ Proportion of genome encoding the SEFIR system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /sefir/SEFIR__bSEFIR.pdb
+   - /sefir/SEFIR__bSEFIR.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/septu.md b/content/3.defense-systems/septu.md
index 2addac55da261ef8482b974bece8df5346ac2ed8..6ca8108a32e4e1214430fba3db7ce771245262a0 100644
--- a/content/3.defense-systems/septu.md
+++ b/content/3.defense-systems/septu.md
@@ -47,8 +47,8 @@ Proportion of genome encoding the Septu system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /septu/Septu.Septu__PtuA.1.V.pdb
-   - /septu/Septu.Septu__PtuB.1.V.pdb
+   - /septu/Septu.Septu__PtuA.1.V.cif
+   - /septu/Septu.Septu__PtuB.1.V.cif
 
 ---
 ::
@@ -58,8 +58,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /septu/Septu.Septu__PtuB.1.V.pdb
-   - /septu/Septu.Septu__PtuA.1.V.pdb
+   - /septu/Septu.Septu__PtuB.1.V.cif
+   - /septu/Septu.Septu__PtuA.1.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/shango.md b/content/3.defense-systems/shango.md
index b174aaf8dfefe09c3aad6bb4657cc8906aea4226..a878f553b457e9781f50df1b5cabe3b8130bca32 100644
--- a/content/3.defense-systems/shango.md
+++ b/content/3.defense-systems/shango.md
@@ -58,9 +58,9 @@ Proportion of genome encoding the Shango system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /shango/Shango.Shango__SngA.0.V.pdb
-   - /shango/Shango.Shango__SngB.0.V.pdb
-   - /shango/Shango.Shango__SngC.0.V.pdb
+   - /shango/Shango.Shango__SngA.0.V.cif
+   - /shango/Shango.Shango__SngB.0.V.cif
+   - /shango/Shango.Shango__SngC.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/shedu.md b/content/3.defense-systems/shedu.md
index 5835ad1e65df71d3dcf9e5a7169cf519d426c022..fdc8c3d908c5a619bf0926403fb8df287b09df0b 100644
--- a/content/3.defense-systems/shedu.md
+++ b/content/3.defense-systems/shedu.md
@@ -62,7 +62,7 @@ Proportion of genome encoding the Shedu system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /shedu/Shedu__SduA.pdb
+   - /shedu/Shedu__SduA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/shosta.md b/content/3.defense-systems/shosta.md
index 90f1cdd3cb261dca98bdfecb7f8c165693cdf616..6d1e9a31a011d9e552f9520d5cbca81ebbb02e13 100644
--- a/content/3.defense-systems/shosta.md
+++ b/content/3.defense-systems/shosta.md
@@ -57,8 +57,8 @@ Proportion of genome encoding the ShosTA system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /shosta/ShosTA.ShosTA__ShosA.0.V.pdb
-   - /shosta/ShosTA.ShosTA__ShosT.0.V.pdb
+   - /shosta/ShosTA.ShosTA__ShosA.0.V.cif
+   - /shosta/ShosTA.ShosTA__ShosT.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/sofic.md b/content/3.defense-systems/sofic.md
index 9b38dbc4bd7072007a975089f637cc32c27a2434..dba25f172f71452bb782395d7bf2507d8da0cc0e 100644
--- a/content/3.defense-systems/sofic.md
+++ b/content/3.defense-systems/sofic.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the SoFIC system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /sofic/SoFic__SoFic.pdb
+   - /sofic/SoFic__SoFic.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/spbk.md b/content/3.defense-systems/spbk.md
index 8b3f25f7eab596a4fdbc569d54b75f9e75e3f220..a4a5f0c7cdfa4254f9810418d8f2dd5552f56229 100644
--- a/content/3.defense-systems/spbk.md
+++ b/content/3.defense-systems/spbk.md
@@ -45,7 +45,7 @@ Proportion of genome encoding the SpbK system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /spbk/SpbK__SpbK.pdb
+   - /spbk/SpbK__SpbK.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/sspbcde.md b/content/3.defense-systems/sspbcde.md
index acb6b9bb45d7b02c5c01dbc69f4ac8cb962c74d1..2a069f26741c6e3d2283c2b3955caad55077ae74 100644
--- a/content/3.defense-systems/sspbcde.md
+++ b/content/3.defense-systems/sspbcde.md
@@ -46,10 +46,10 @@ Proportion of genome encoding the SspBCDE system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /sspbcde/SspBCDE.SspBCDE__SspC.1.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspD.0.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspE.0.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspB.1.V.pdb
+   - /sspbcde/SspBCDE.SspBCDE__SspC.1.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspD.0.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspE.0.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspB.1.V.cif
 
 ---
 ::
@@ -59,12 +59,12 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /sspbcde/SspBCDE.SspBCDE__SspH.1.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspG.1.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspF.1.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspD.0.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspC.1.V.pdb
-   - /sspbcde/SspBCDE.SspBCDE__SspB.1.V.pdb
+   - /sspbcde/SspBCDE.SspBCDE__SspH.1.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspG.1.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspF.1.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspD.0.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspC.1.V.cif
+   - /sspbcde/SspBCDE.SspBCDE__SspB.1.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/stk2.md b/content/3.defense-systems/stk2.md
index b90aff235be13dde6a23eb8895dfb514d08a80c3..73583cc29ac3b6078d13e5a3d785f93b03e69a21 100644
--- a/content/3.defense-systems/stk2.md
+++ b/content/3.defense-systems/stk2.md
@@ -54,7 +54,7 @@ Proportion of genome encoding the Stk2 system for the 14 phyla with more than 50
 ---
 height: 700
 dataUrls:
-   - /stk2/Stk2__Stk2.pdb
+   - /stk2/Stk2__Stk2.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/thoeris.md b/content/3.defense-systems/thoeris.md
index 37cc0da5cc541a39768c664c34594358cee7956b..8267588579acddbb64dbaae5ec4498dadd4f1c42 100644
--- a/content/3.defense-systems/thoeris.md
+++ b/content/3.defense-systems/thoeris.md
@@ -46,8 +46,8 @@ Proportion of genome encoding the Thoeris system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /thoeris/Thoeris_I.Thoeris_I__ThsA_new_grand.0.V.pdb
-   - /thoeris/Thoeris_I.Thoeris__ThsB_Global.0.V.pdb
+   - /thoeris/Thoeris_I.Thoeris_I__ThsA_new_grand.0.V.cif
+   - /thoeris/Thoeris_I.Thoeris__ThsB_Global.0.V.cif
 
 ---
 ::
@@ -58,8 +58,8 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /thoeris/Thoeris_I.Thoeris__ThsB_Global.0.V.pdb
-   - /thoeris/Thoeris_II.Thoeris_II__ThsA_new_petit.0.V.pdb
+   - /thoeris/Thoeris_I.Thoeris__ThsB_Global.0.V.cif
+   - /thoeris/Thoeris_II.Thoeris_II__ThsA_new_petit.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/tiamat.md b/content/3.defense-systems/tiamat.md
index ac0dc63e7ac2ed8b5feb0561900946036232fbab..e6220d71efd3ddd389a24f496104e08c2f9784fc 100644
--- a/content/3.defense-systems/tiamat.md
+++ b/content/3.defense-systems/tiamat.md
@@ -57,7 +57,7 @@ Proportion of genome encoding the Tiamat system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /tiamat/Tiamat__TmtA.pdb
+   - /tiamat/Tiamat__TmtA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/uzume.md b/content/3.defense-systems/uzume.md
index eb205809f41373073c44265fc8c144c83630e9c9..0944ce2cdef5136f31895c0e70ed1f823c26d1ee 100644
--- a/content/3.defense-systems/uzume.md
+++ b/content/3.defense-systems/uzume.md
@@ -44,7 +44,7 @@ Proportion of genome encoding the Uzume system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /uzume/Uzume__UzmA.pdb
+   - /uzume/Uzume__UzmA.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/viperin.md b/content/3.defense-systems/viperin.md
index 9248671fdffe58f45fc9759e80e90fbe279b1b7f..d02242bd985bb45d68bc1447d533b36cbd628726 100644
--- a/content/3.defense-systems/viperin.md
+++ b/content/3.defense-systems/viperin.md
@@ -64,7 +64,7 @@ Proportion of genome encoding the Viperin system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /viperin/Viperin__pVip.pdb
+   - /viperin/Viperin__pVip.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/wadjet.md b/content/3.defense-systems/wadjet.md
index a4c099bad69e6e2f76cdf8a14600ca36dcd48ec5..022dbdc1c310d46a2362d7668c86c10f1db4c44f 100644
--- a/content/3.defense-systems/wadjet.md
+++ b/content/3.defense-systems/wadjet.md
@@ -53,10 +53,10 @@ Proportion of genome encoding the Wadjet system for the 14 phyla with more than
 ---
 height: 700
 dataUrls:
-   - /wadjet/Wadjet_I.Wadjet__JetA_I.0.V.pdb
-   - /wadjet/Wadjet_I.Wadjet__JetB_I.0.V.pdb
-   - /wadjet/Wadjet_I.Wadjet__JetC_I.0.V.pdb
-   - /wadjet/Wadjet_I.Wadjet__JetD_I.0.V.pdb
+   - /wadjet/Wadjet_I.Wadjet__JetA_I.0.V.cif
+   - /wadjet/Wadjet_I.Wadjet__JetB_I.0.V.cif
+   - /wadjet/Wadjet_I.Wadjet__JetC_I.0.V.cif
+   - /wadjet/Wadjet_I.Wadjet__JetD_I.0.V.cif
 
 ---
 ::
@@ -67,10 +67,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /wadjet/Wadjet_II.Wadjet__JetD_II.0.V.pdb
-   - /wadjet/Wadjet_II.Wadjet__JetC_II.0.V.pdb
-   - /wadjet/Wadjet_II.Wadjet__JetB_II.0.V.pdb
-   - /wadjet/Wadjet_II.Wadjet__JetA_II.0.V.pdb
+   - /wadjet/Wadjet_II.Wadjet__JetD_II.0.V.cif
+   - /wadjet/Wadjet_II.Wadjet__JetC_II.0.V.cif
+   - /wadjet/Wadjet_II.Wadjet__JetB_II.0.V.cif
+   - /wadjet/Wadjet_II.Wadjet__JetA_II.0.V.cif
 
 ---
 ::
@@ -81,10 +81,10 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /wadjet/Wadjet_III.Wadjet__JetD_III.0.V.pdb
-   - /wadjet/Wadjet_III.Wadjet__JetA_III.0.V.pdb
-   - /wadjet/Wadjet_III.Wadjet__JetB_III.0.V.pdb
-   - /wadjet/Wadjet_III.Wadjet__JetC_III.0.V.pdb
+   - /wadjet/Wadjet_III.Wadjet__JetD_III.0.V.cif
+   - /wadjet/Wadjet_III.Wadjet__JetA_III.0.V.cif
+   - /wadjet/Wadjet_III.Wadjet__JetB_III.0.V.cif
+   - /wadjet/Wadjet_III.Wadjet__JetC_III.0.V.cif
 
 ---
 ::
diff --git a/content/3.defense-systems/zorya.md b/content/3.defense-systems/zorya.md
index a83c1d3cf4d215d97c689a819febf53c05e08107..17d9ebd53ba5119b14512fe20ba4a03d20e8cd25 100644
--- a/content/3.defense-systems/zorya.md
+++ b/content/3.defense-systems/zorya.md
@@ -50,10 +50,10 @@ Proportion of genome encoding the Zorya system for the 14 phyla with more than 5
 ---
 height: 700
 dataUrls:
-   - /zorya/Zorya_TypeI.Zorya_TypeI__ZorC.0.V.pdb
-   - /zorya/Zorya_TypeI.Zorya_TypeI__ZorD.0.V.pdb
-   - /zorya/Zorya_TypeII.Zorya__ZorA.0.V.pdb
-   - /zorya/Zorya_TypeI.Zorya__ZorB.0.V.pdb
+   - /zorya/Zorya_TypeI.Zorya_TypeI__ZorC.0.V.cif
+   - /zorya/Zorya_TypeI.Zorya_TypeI__ZorD.0.V.cif
+   - /zorya/Zorya_TypeII.Zorya__ZorA.0.V.cif
+   - /zorya/Zorya_TypeI.Zorya__ZorB.0.V.cif
 
 ---
 ::
@@ -64,9 +64,9 @@ dataUrls:
 ---
 height: 700
 dataUrls:
-   - /zorya/Zorya_TypeII.Zorya__ZorA.0.V.pdb
-   - /zorya/Zorya_TypeI.Zorya__ZorB.0.V.pdb
-   - /zorya/Zorya_TypeII.Zorya_TypeII__ZorE.0.V.pdb
+   - /zorya/Zorya_TypeII.Zorya__ZorA.0.V.cif
+   - /zorya/Zorya_TypeI.Zorya__ZorB.0.V.cif
+   - /zorya/Zorya_TypeII.Zorya_TypeII__ZorE.0.V.cif
 
 ---
 ::