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Commit 561537c4 authored by Jean c's avatar Jean c
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replace .pdb with .cif

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Pipeline #120432 passed
Stage: delete-release
Stage: build-df-cli
Stage: lint
Stage: get-data
Stage: deploy-meilisearch
Stage: update-meilisearch-indexes
Stage: get-meili-key
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content/3.defense-systems/mok_hok_sok.md
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...@@ -60,7 +60,7 @@ Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more ...@@ -60,7 +60,7 @@ Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /mok_hok_sok/Mok_Hok_Sok__Hok.pdb - /mok_hok_sok/Mok_Hok_Sok__Hok.cif
--- ---
:: ::
......
content/3.defense-systems/mokosh.md
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...@@ -75,7 +75,7 @@ Proportion of genome encoding the Mokosh system for the 14 phyla with more than ...@@ -75,7 +75,7 @@ Proportion of genome encoding the Mokosh system for the 14 phyla with more than
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.pdb - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
--- ---
:: ::
...@@ -85,7 +85,7 @@ dataUrls: ...@@ -85,7 +85,7 @@ dataUrls:
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.pdb - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
--- ---
:: ::
...@@ -96,7 +96,7 @@ dataUrls: ...@@ -96,7 +96,7 @@ dataUrls:
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /mokosh/Mokosh_TypeII__MkoC.pdb - /mokosh/Mokosh_TypeII__MkoC.cif
--- ---
:: ::
......
content/3.defense-systems/nhi.md
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...@@ -57,7 +57,7 @@ Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 ...@@ -57,7 +57,7 @@ Proportion of genome encoding the Nhi system for the 14 phyla with more than 50
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /nhi/Nhi__Nhi.pdb - /nhi/Nhi__Nhi.cif
--- ---
:: ::
......
content/3.defense-systems/nixi.md
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...@@ -52,7 +52,7 @@ Proportion of genome encoding the NixI system for the 14 phyla with more than 50 ...@@ -52,7 +52,7 @@ Proportion of genome encoding the NixI system for the 14 phyla with more than 50
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /nixi/NixI__NixI.pdb - /nixi/NixI__NixI.cif
--- ---
:: ::
......
content/3.defense-systems/nlr.md
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...@@ -49,7 +49,7 @@ Proportion of genome encoding the NLR system for the 14 phyla with more than 50 ...@@ -49,7 +49,7 @@ Proportion of genome encoding the NLR system for the 14 phyla with more than 50
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01.pdb - /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01.cif
--- ---
:: ::
...@@ -60,7 +60,7 @@ dataUrls: ...@@ -60,7 +60,7 @@ dataUrls:
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09.pdb - /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09.cif
--- ---
:: ::
......
content/3.defense-systems/old_exonuclease.md
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...@@ -55,7 +55,7 @@ Proportion of genome encoding the Old_exonuclease system for the 14 phyla with m ...@@ -55,7 +55,7 @@ Proportion of genome encoding the Old_exonuclease system for the 14 phyla with m
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /old_exonuclease/Old_exonuclease__Old_exonuclease.pdb - /old_exonuclease/Old_exonuclease__Old_exonuclease.cif
--- ---
:: ::
......
content/3.defense-systems/olokun.md
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...@@ -61,8 +61,8 @@ Proportion of genome encoding the Olokun system for the 14 phyla with more than ...@@ -61,8 +61,8 @@ Proportion of genome encoding the Olokun system for the 14 phyla with more than
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /olokun/Olokun.Olokun__OloA.0.V.pdb - /olokun/Olokun.Olokun__OloA.0.V.cif
- /olokun/Olokun.Olokun__OloB.0.V.pdb - /olokun/Olokun.Olokun__OloB.0.V.cif
--- ---
:: ::
......
content/3.defense-systems/pago.md
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...@@ -108,15 +108,15 @@ Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 ...@@ -108,15 +108,15 @@ Proportion of genome encoding the pAgo system for the 14 phyla with more than 50
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pago/pAgo__pAgo_LongA.pdb - /pago/pAgo__pAgo_LongA.cif
- /pago/pAgo__pAgo_LongB.pdb - /pago/pAgo__pAgo_LongB.cif
- /pago/pAgo__pAgo_S1A.pdb - /pago/pAgo__pAgo_S1A.cif
- /pago/pAgo__SIR2APAZ.pdb - /pago/pAgo__SIR2APAZ.cif
- /pago/pAgo__pAgo_S1B.pdb - /pago/pAgo__pAgo_S1B.cif
- /pago/pAgo__XAPAZ.pdb - /pago/pAgo__XAPAZ.cif
- /pago/pAgo__pAgo_S2B.pdb - /pago/pAgo__pAgo_S2B.cif
- /pago/pAgo__TIRAPAZ.pdb - /pago/pAgo__TIRAPAZ.cif
- /pago/pAgo__pAgo_SPARTA.pdb - /pago/pAgo__pAgo_SPARTA.cif
--- ---
:: ::
......
content/3.defense-systems/panchino_gp28.md
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...@@ -45,7 +45,7 @@ Proportion of genome encoding the Panchino_gp28 system for the 14 phyla with mor ...@@ -45,7 +45,7 @@ Proportion of genome encoding the Panchino_gp28 system for the 14 phyla with mor
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /panchino_gp28/Panchino_gp28__gp28.pdb - /panchino_gp28/Panchino_gp28__gp28.cif
--- ---
:: ::
......
content/3.defense-systems/paris.md
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...@@ -56,8 +56,8 @@ Proportion of genome encoding the Paris system for the 14 phyla with more than 5 ...@@ -56,8 +56,8 @@ Proportion of genome encoding the Paris system for the 14 phyla with more than 5
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /paris/PARIS_I.PARIS_I__AAA_15.0.V.pdb - /paris/PARIS_I.PARIS_I__AAA_15.0.V.cif
- /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.pdb - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
--- ---
:: ::
...@@ -68,8 +68,8 @@ dataUrls: ...@@ -68,8 +68,8 @@ dataUrls:
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.pdb - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
- /paris/PARIS_II.PARIS_II__AAA_21.0.V.pdb - /paris/PARIS_II.PARIS_II__AAA_21.0.V.cif
--- ---
:: ::
...@@ -80,7 +80,7 @@ dataUrls: ...@@ -80,7 +80,7 @@ dataUrls:
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /paris/PARIS_II_merge__AAA_21_DUF4435.pdb - /paris/PARIS_II_merge__AAA_21_DUF4435.cif
--- ---
:: ::
...@@ -91,7 +91,7 @@ dataUrls: ...@@ -91,7 +91,7 @@ dataUrls:
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /paris/PARIS_I_merge__AAA_15_DUF4435.pdb - /paris/PARIS_I_merge__AAA_15_DUF4435.cif
--- ---
:: ::
......
content/3.defense-systems/pd-lambda-1.md
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...@@ -57,7 +57,7 @@ Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more ...@@ -57,7 +57,7 @@ Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-lambda-1/PD-Lambda-1__PD-Lambda-1.pdb - /pd-lambda-1/PD-Lambda-1__PD-Lambda-1.cif
--- ---
:: ::
......
content/3.defense-systems/pd-lambda-2.md
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...@@ -45,9 +45,9 @@ Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more ...@@ -45,9 +45,9 @@ Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_C.0.V.pdb - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_C.0.V.cif
- /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_B.0.V.pdb - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_B.0.V.cif
- /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_A.0.V.pdb - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_A.0.V.cif
--- ---
:: ::
......
content/3.defense-systems/pd-lambda-3.md
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...@@ -54,9 +54,9 @@ Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more ...@@ -54,9 +54,9 @@ Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_A.0.V.pdb - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_A.0.V.cif
- /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_B.0.V.pdb - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_B.0.V.cif
- /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_C.0.V.pdb - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_C.0.V.cif
--- ---
:: ::
......
content/3.defense-systems/pd-lambda-4.md
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...@@ -44,8 +44,8 @@ Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more ...@@ -44,8 +44,8 @@ Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_B.0.V.pdb - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_B.0.V.cif
- /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_A.0.V.pdb - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_A.0.V.cif
--- ---
:: ::
......
content/3.defense-systems/pd-lambda-5.md
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...@@ -53,8 +53,8 @@ Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more ...@@ -53,8 +53,8 @@ Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_A.0.V.pdb - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_A.0.V.cif
- /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_B.0.V.pdb - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_B.0.V.cif
--- ---
:: ::
......
content/3.defense-systems/pd-lambda-6.md
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...@@ -44,7 +44,7 @@ Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more ...@@ -44,7 +44,7 @@ Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-lambda-6/PD-Lambda-6__PD-Lambda-6.pdb - /pd-lambda-6/PD-Lambda-6__PD-Lambda-6.cif
--- ---
:: ::
......
content/3.defense-systems/pd-t4-1.md
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...@@ -45,7 +45,7 @@ Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than ...@@ -45,7 +45,7 @@ Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-t4-1/PD-T4-1__PD-T4-1.pdb - /pd-t4-1/PD-T4-1__PD-T4-1.cif
--- ---
:: ::
......
content/3.defense-systems/pd-t4-10.md
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...@@ -54,8 +54,8 @@ Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more tha ...@@ -54,8 +54,8 @@ Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more tha
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_B.0.V.pdb - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_B.0.V.cif
- /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_A.0.V.pdb - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_A.0.V.cif
--- ---
:: ::
......
content/3.defense-systems/pd-t4-2.md
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...@@ -45,8 +45,8 @@ Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than ...@@ -45,8 +45,8 @@ Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_A.0.DF.pdb - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_A.0.DF.cif
- /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_B.0.DF.pdb - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_B.0.DF.cif
--- ---
:: ::
......
content/3.defense-systems/pd-t4-3.md
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...@@ -55,7 +55,7 @@ Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than ...@@ -55,7 +55,7 @@ Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than
--- ---
height: 700 height: 700
dataUrls: dataUrls:
- /pd-t4-3/PD-T4-3__PD-T4-3.pdb - /pd-t4-3/PD-T4-3__PD-T4-3.cif
--- ---
:: ::
......
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