From 7286f1e415502d17c5f3e7aea7d5e974256042d1 Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Thu, 5 Oct 2023 16:56:03 +0200
Subject: [PATCH] rename stuff
---
components/Nav/Navbar.vue | 3 +-
content/1.help.md | 10 ++++++
.../0.index.md | 0
.../1.abortive-infection.md | 0
.../2.defense-islands.md | 0
.../0.index.md | 0
.../abi2.md | 0
.../abia.md | 0
.../abib.md | 0
.../abic.md | 0
.../abid.md | 0
.../abie.md | 0
.../abig.md | 0
.../abih.md | 0
.../abii.md | 0
.../abij.md | 0
.../abik.md | 0
.../abil.md | 0
.../abin.md | 0
.../abio.md | 0
.../abip2.md | 0
.../abiq.md | 0
.../abir.md | 0
.../abit.md | 0
.../abiu.md | 0
.../abiv.md | 0
.../abiz.md | 0
.../aditi.md | 0
.../avs.md | 0
.../azaca.md | 0
.../borvo.md | 0
.../brex.md | 0
.../bsta.md | 0
.../bunzi.md | 0
.../butters_gp30_gp31.md | 0
.../butters_gp57r.md | 0
.../caprel.md | 0
.../card_nlr.md | 0
.../cbass.md | 0
.../charlie_gp32.md | 0
.../dartg.md | 0
.../dazbog.md | 0
.../dctpdeaminase.md | 0
.../detocs.md | 0
.../dgtpase.md | 0
.../disarm.md | 0
.../dmdde.md | 0
.../dnd.md | 0
.../dodola.md | 0
.../dpd.md | 0
.../drt.md | 0
.../druantia.md | 0
.../dsr.md | 0
.../eleos.md | 0
.../fs_giy_yig.md | 0
.../fs_hepn_tm.md | 0
.../fs_hp.md | 0
.../fs_hp_sdh_sah.md | 0
.../fs_hsdr_like.md | 0
.../fs_sma.md | 0
.../gabija.md | 0
.../gao_ape.md | 0
.../gao_her.md | 0
.../gao_hhe.md | 0
.../gao_iet.md | 0
.../gao_mza.md | 0
.../gao_ppl.md | 0
.../gao_qat.md | 0
.../gao_rl.md | 0
.../gao_tery.md | 0
.../gao_tmn.md | 0
.../gao_upx.md | 0
.../gaps1.md | 0
.../gaps2.md | 0
.../gaps4.md | 0
.../gaps6.md | 0
.../gasdermin.md | 0
.../hachiman.md | 0
.../hna.md | 0
.../isg15-like.md | 0
.../jukab.md | 0
.../kiwa.md | 0
.../lamassu-fam.md | 0
.../lit.md | 0
.../mads.md | 0
.../mazef.md | 0
.../menshen.md | 0
.../mmb_gp29_gp30.md | 0
.../mok_hok_sok.md | 0
.../mokosh.md | 0
.../mqsrac.md | 0
.../nhi.md | 0
.../nixi.md | 0
.../nlr.md | 0
.../old/abi2.md | 0
.../old/abia.md | 0
.../old/abie.md | 0
.../old/avast.md | 0
.../old/gao_rl.md | 0
.../old/paris.md | 0
.../old/rm.md | 0
.../old/viperin.md | 0
.../old_exonuclease.md | 0
.../olokun.md | 0
.../pago.md | 0
.../panchino_gp28.md | 0
.../paris.md | 0
.../pd-lambda-1.md | 0
.../pd-lambda-2.md | 0
.../pd-lambda-3.md | 0
.../pd-lambda-4.md | 0
.../pd-lambda-5.md | 0
.../pd-lambda-6.md | 0
.../pd-t4-1.md | 0
.../pd-t4-10.md | 0
.../pd-t4-2.md | 0
.../pd-t4-3.md | 0
.../pd-t4-4.md | 0
.../pd-t4-5.md | 0
.../pd-t4-6.md | 0
.../pd-t4-7.md | 0
.../pd-t4-8.md | 0
.../pd-t4-9.md | 0
.../pd-t7-1.md | 0
.../pd-t7-2.md | 0
.../pd-t7-3.md | 0
.../pd-t7-4.md | 0
.../pd-t7-5.md | 0
.../pfiat.md | 0
.../phrann_gp29_gp30.md | 0
.../pif.md | 0
.../prrc.md | 0
.../psyrta.md | 0
.../pycsar.md | 0
.../radar.md | 0
.../retron.md | 0
.../rexab.md | 0
.../rloc.md | 0
.../rm.md | 0
.../rnlab.md | 0
.../rosmerta.md | 0
.../rst_2tm_1tm_tir.md | 0
.../rst_3hp.md | 0
.../rst_duf4238.md | 0
.../rst_gop_beta_cll.md | 0
.../rst_helicaseduf2290.md | 0
.../rst_hydrolase-3tm.md | 0
.../rst_rt-nitrilase-tm.md | 0
.../rst_tir-nlr.md | 0
.../sanata.md | 0
.../sefir.md | 0
.../septu.md | 0
.../shango.md | 0
.../shedu.md | 0
.../shosta.md | 0
.../sofic.md | 0
.../spbk.md | 0
.../sspbcde.md | 0
.../stk2.md | 0
.../thoeris.md | 0
.../tiamat.md | 0
.../uzume.md | 0
.../viperin.md | 0
.../wadjet.md | 0
.../zorya.md | 0
content/{3.refseq => 4.refseq}/index.md | 0
pages/refseq.vue | 32 +++++++++----------
167 files changed, 27 insertions(+), 18 deletions(-)
create mode 100644 content/1.help.md
rename content/{1.general-concepts => 2.general-concepts}/0.index.md (100%)
rename content/{1.general-concepts => 2.general-concepts}/1.abortive-infection.md (100%)
rename content/{1.general-concepts => 2.general-concepts}/2.defense-islands.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/0.index.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abi2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abia.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abib.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abic.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abid.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abie.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abig.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abih.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abii.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abij.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abik.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abil.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abin.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abio.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abip2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abiq.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abir.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abit.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abiu.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abiv.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/abiz.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/aditi.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/avs.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/azaca.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/borvo.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/brex.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/bsta.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/bunzi.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/butters_gp30_gp31.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/butters_gp57r.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/caprel.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/card_nlr.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/cbass.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/charlie_gp32.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dartg.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dazbog.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dctpdeaminase.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/detocs.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dgtpase.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/disarm.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dmdde.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dnd.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dodola.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dpd.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/drt.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/druantia.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/dsr.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/eleos.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/fs_giy_yig.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/fs_hepn_tm.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/fs_hp.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/fs_hp_sdh_sah.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/fs_hsdr_like.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/fs_sma.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gabija.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_ape.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_her.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_hhe.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_iet.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_mza.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_ppl.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_qat.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_rl.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_tery.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_tmn.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gao_upx.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gaps1.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gaps2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gaps4.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gaps6.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/gasdermin.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/hachiman.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/hna.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/isg15-like.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/jukab.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/kiwa.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/lamassu-fam.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/lit.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/mads.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/mazef.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/menshen.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/mmb_gp29_gp30.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/mok_hok_sok.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/mokosh.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/mqsrac.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/nhi.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/nixi.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/nlr.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/abi2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/abia.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/abie.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/avast.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/gao_rl.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/paris.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/rm.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old/viperin.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/old_exonuclease.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/olokun.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pago.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/panchino_gp28.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/paris.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-lambda-1.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-lambda-2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-lambda-3.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-lambda-4.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-lambda-5.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-lambda-6.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-1.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-10.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-3.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-4.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-5.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-6.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-7.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-8.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t4-9.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t7-1.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t7-2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t7-3.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t7-4.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pd-t7-5.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pfiat.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/phrann_gp29_gp30.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pif.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/prrc.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/psyrta.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/pycsar.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/radar.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/retron.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rexab.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rloc.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rm.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rnlab.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rosmerta.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_2tm_1tm_tir.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_3hp.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_duf4238.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_gop_beta_cll.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_helicaseduf2290.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_hydrolase-3tm.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_rt-nitrilase-tm.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/rst_tir-nlr.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/sanata.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/sefir.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/septu.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/shango.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/shedu.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/shosta.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/sofic.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/spbk.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/sspbcde.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/stk2.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/thoeris.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/tiamat.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/uzume.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/viperin.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/wadjet.md (100%)
rename content/{2.defense-systems => 3.defense-systems}/zorya.md (100%)
rename content/{3.refseq => 4.refseq}/index.md (100%)
diff --git a/components/Nav/Navbar.vue b/components/Nav/Navbar.vue
index 4863d82e..06fdd172 100644
--- a/components/Nav/Navbar.vue
+++ b/components/Nav/Navbar.vue
@@ -1,5 +1,5 @@
<template>
- <v-app-bar :elevation="0" border>
+ <v-app-bar :elevation="0" border density="prominent">
<template #prepend>
<v-app-bar-nav-icon @click.stop="drawer = !drawer"></v-app-bar-nav-icon>
<!-- <Logo height="45px" /> -->
@@ -70,6 +70,7 @@ const sections = ref([
href: runtimeConfig.public.defenseFinderWebservice,
},
{ id: "refseq", label: "REFSEQ", href: refinedRefSeqPath.value },
+ { id: "toto", label: "Help", href: "/help" },
]);
const drawer = ref(true);
diff --git a/content/1.help.md b/content/1.help.md
new file mode 100644
index 00000000..aa191c1c
--- /dev/null
+++ b/content/1.help.md
@@ -0,0 +1,10 @@
+---
+title: help
+layout: article
+icon: 'md:list'
+---
+
+
+
+## test
+de l'aide
\ No newline at end of file
diff --git a/content/1.general-concepts/0.index.md b/content/2.general-concepts/0.index.md
similarity index 100%
rename from content/1.general-concepts/0.index.md
rename to content/2.general-concepts/0.index.md
diff --git a/content/1.general-concepts/1.abortive-infection.md b/content/2.general-concepts/1.abortive-infection.md
similarity index 100%
rename from content/1.general-concepts/1.abortive-infection.md
rename to content/2.general-concepts/1.abortive-infection.md
diff --git a/content/1.general-concepts/2.defense-islands.md b/content/2.general-concepts/2.defense-islands.md
similarity index 100%
rename from content/1.general-concepts/2.defense-islands.md
rename to content/2.general-concepts/2.defense-islands.md
diff --git a/content/2.defense-systems/0.index.md b/content/3.defense-systems/0.index.md
similarity index 100%
rename from content/2.defense-systems/0.index.md
rename to content/3.defense-systems/0.index.md
diff --git a/content/2.defense-systems/abi2.md b/content/3.defense-systems/abi2.md
similarity index 100%
rename from content/2.defense-systems/abi2.md
rename to content/3.defense-systems/abi2.md
diff --git a/content/2.defense-systems/abia.md b/content/3.defense-systems/abia.md
similarity index 100%
rename from content/2.defense-systems/abia.md
rename to content/3.defense-systems/abia.md
diff --git a/content/2.defense-systems/abib.md b/content/3.defense-systems/abib.md
similarity index 100%
rename from content/2.defense-systems/abib.md
rename to content/3.defense-systems/abib.md
diff --git a/content/2.defense-systems/abic.md b/content/3.defense-systems/abic.md
similarity index 100%
rename from content/2.defense-systems/abic.md
rename to content/3.defense-systems/abic.md
diff --git a/content/2.defense-systems/abid.md b/content/3.defense-systems/abid.md
similarity index 100%
rename from content/2.defense-systems/abid.md
rename to content/3.defense-systems/abid.md
diff --git a/content/2.defense-systems/abie.md b/content/3.defense-systems/abie.md
similarity index 100%
rename from content/2.defense-systems/abie.md
rename to content/3.defense-systems/abie.md
diff --git a/content/2.defense-systems/abig.md b/content/3.defense-systems/abig.md
similarity index 100%
rename from content/2.defense-systems/abig.md
rename to content/3.defense-systems/abig.md
diff --git a/content/2.defense-systems/abih.md b/content/3.defense-systems/abih.md
similarity index 100%
rename from content/2.defense-systems/abih.md
rename to content/3.defense-systems/abih.md
diff --git a/content/2.defense-systems/abii.md b/content/3.defense-systems/abii.md
similarity index 100%
rename from content/2.defense-systems/abii.md
rename to content/3.defense-systems/abii.md
diff --git a/content/2.defense-systems/abij.md b/content/3.defense-systems/abij.md
similarity index 100%
rename from content/2.defense-systems/abij.md
rename to content/3.defense-systems/abij.md
diff --git a/content/2.defense-systems/abik.md b/content/3.defense-systems/abik.md
similarity index 100%
rename from content/2.defense-systems/abik.md
rename to content/3.defense-systems/abik.md
diff --git a/content/2.defense-systems/abil.md b/content/3.defense-systems/abil.md
similarity index 100%
rename from content/2.defense-systems/abil.md
rename to content/3.defense-systems/abil.md
diff --git a/content/2.defense-systems/abin.md b/content/3.defense-systems/abin.md
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diff --git a/pages/refseq.vue b/pages/refseq.vue
index e905c3d1..fc10c341 100644
--- a/pages/refseq.vue
+++ b/pages/refseq.vue
@@ -20,8 +20,8 @@ const {
queryContent("/_partial/refseq").where({ _partial: true }).findOne()
);
-const availableTaxo = ref(["species", "genus"]);
-const selectedTaxoRank = ref("species");
+const availableTaxo = ref(["species", "genus", "phylum"]);
+const selectedTaxoRank = ref("phylum");
const sanitizedRefseq = computed(() => {
if (refseqData.value?.body) {
return refseqData.value.body;
@@ -46,6 +46,7 @@ const headers = ref([
title: "System",
key: "type",
},
+ { title: "Phylum", key: "phylum" },
{ title: "Genus", key: "genus" },
{ title: "Species", key: "species" },
]);
@@ -80,32 +81,32 @@ function filterOnlyCapsText(value, query, item) {
const computedDistriSystemOptions = computed(() => {
const groupYOption = facetDistriSystem.value
? {
- fy: "type",
- y: selectedTaxoRank.value,
- fill: selectedTaxoRank.value,
+ fx: "type",
+ x: selectedTaxoRank.value,
+ // fill: selectedTaxoRank.value,
tip: true,
sort: { y: "-x" },
}
: {
- y: "type",
+ x: "type",
tip: true,
- fill: selectedTaxoRank.value,
- sort: { y: "-x" },
+ // fill: selectedTaxoRank.value,
+ sort: { x: "-y" },
};
return {
marginLeft: facetDistriSystem.value ? 120 : 112,
- x: { label: null },
+ x: { label: null, tickRotate: 40 },
y: { grid: true },
color: { legend: true },
width: computedWidth.value,
height: facetDistriSystem.value ? height.value * 8 : height.value * 2,
marks: [
Plot.frame(),
- Plot.barX(
+ Plot.barY(
unref(selectedRefSeq.value),
- Plot.groupY(
- { x: facetDistriSystem.value ? "proportion-facet" : "count" },
+ Plot.groupX(
+ { y: facetDistriSystem.value ? "proportion-facet" : "count" },
groupYOption
)
),
@@ -126,7 +127,7 @@ const computedDistriTaxoOptions = computed(() => {
y: selectedTaxoRank.value,
tip: true,
fill: "type",
- offset: "normalize",
+ // offset: "normalize",
sort: { y: "x", reverse: true },
};
@@ -150,10 +151,7 @@ const computedDistriTaxoOptions = computed(() => {
Plot.frame(),
Plot.barX(
unref(selectedRefSeq.value),
- Plot.groupY(
- { x: facet.value ? "proportion-facet" : "count" },
- groupYOption
- )
+ Plot.groupY({ x: "count" }, groupYOption)
),
],
};
--
GitLab