diff --git a/content/3.defense-systems/abi2.md b/content/3.defense-systems/abi2.md
index f7175bc53060f9e8a09c7c1f3b17316661531f5d..016913ccf87facb99a1c397a2a18606d999aaa0e 100644
--- a/content/3.defense-systems/abi2.md
+++ b/content/3.defense-systems/abi2.md
@@ -16,22 +16,24 @@ relevantAbstracts:
# Abi2
-The Abi2 system is composed of one protein: Abi_2.
-Here is an example found in the RefSeq database:
+## Example of genomic structure
+
+The Abi2 is composed of 1 protein: Abi_2.
+Here is an example found in the RefSeq database:
-
+{max-width=750px}
-Abi2 system in the genome of *Clostridium butyricum* (GCF_014131795.1) is composed of 1 protein: Abi_2 (WP_035763709.1).
+The Abi2 system in *Veillonella parvula* (GCF_002005185.1, NZ_CP019721) is composed of 1 protein: Abi_2 (WP_077707938.1)
## Distribution of the system among prokaryotes
-The Abi2 system is present in a total of 176 different species.
+Among the 22,803 complete genomes of RefSeq, the Abi2 is detected in 1231 genomes (5.4 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1210 genomes (5.3 %).
+The system was detected in 202 different species.
-
+{max-width=750px}
-*Proportion of genome encoding the Abi2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Abi2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
diff --git a/content/3.defense-systems/abia.md b/content/3.defense-systems/abia.md
index d6f9d100d3d8178db47c962c3b8ae069ba995d7a..767f5802c40c02fed2e194be8e3acda25c70c482 100644
--- a/content/3.defense-systems/abia.md
+++ b/content/3.defense-systems/abia.md
@@ -19,29 +19,30 @@ relevantAbstracts:
# AbiA
-The AbiA system have been describe in a total of 2 subsystems.
+## Example of genomic structure
-Here is some example found in the RefSeq database:
+A total of 2 subsystems have been described for the AbiA system.
-{max-width=750px}
+Here is some examples found in the RefSeq database:
-AbiA_large subsystem in the genome of *Lactobacillus amylovorus* (GCF_002706375.1) is composed of 1 protein: AbiA_large (WP_056940268.1).
+{max-width=750px}
-{max-width=750px}
+The AbiA_large system in *Staphylococcus nepalensis* (GCF_002442935.1, NZ_CP017466) is composed of 1 protein: AbiA_large (WP_096808013.1)
-AbiA_small subsystem in the genome of *Mesobacillus foraminis* (GCF_003667765.1) is composed of 2 proteins: AbiA_small (WP_121614402.1)and, AbiA_SLATT (WP_121614403.1).
+{max-width=750px}
-## Distribution of the system among prokaryotes
+The AbiA_small system in *Alicyclobacillus sp. SO9* (GCF_016406125.1, NZ_CP066339) is composed of 2 proteins AbiA_small (WP_198850075.1) AbiA_SLATT (WP_198850076.1)
-The AbiA system is present in a total of 35 different species.
+## Distribution of the system among prokaryotes
+Among the 22,803 complete genomes of RefSeq, the AbiA is detected in 50 genomes (0.22 %).
-
-Among the 22k complete genomes of RefSeq, this system is present in 50 genomes (0.2 %).
+The system was detected in 35 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiA system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the AbiA system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abib.md b/content/3.defense-systems/abib.md
index baff84016d22e560190b3f9625e9bff16b1199f6..63d2aafc02c6ec40ca8865606669a139eb4e22ff 100644
--- a/content/3.defense-systems/abib.md
+++ b/content/3.defense-systems/abib.md
@@ -27,23 +27,25 @@ AbiB is a single-protein abortive infection defense system from *Lactococcus* th
AbiB system is still poorly understood. It is a single-protein system that was described as an abortive infection system. Upon phage infection, AbiB activation leads to a strong degradation of mRNAs :ref{doi=10.1046/j.1365-2958.1996.371896.x} that is expected to be the mechanism of phage inhibition. AbiB expression is constitutive and does increase during phage infection. It is only activated during phage infection, most likely through the recognition of an early phage protein. Which protein, and whether this activation is direct or indirect remains to be elucidated.
## Example of genomic structure
-The AbiB system is composed of one protein: AbiB.
-Here is an example found in the RefSeq database:
+The AbiB is composed of 1 protein: AbiB.
+
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiB system in the genome of *Lactococcus lactis* (GCF_020221755.1) is composed of 1 protein: AbiB (WP_047687114.1).
+The AbiB system in *Lactococcus cremoris* (GCF_000312685.1, NC_019430) is composed of 1 protein: AbiB (WP_144019851.1)
## Distribution of the system among prokaryotes
-The AbiB system is present in a total of 5 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiB is detected in 11 genomes (0.05 %).
-Among the 22k complete genomes of RefSeq, this system is present in 13 genomes (0.1 %).
+The system was detected in 5 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiB system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiB system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abic.md b/content/3.defense-systems/abic.md
index 4a337a1f055a292fe1e55e921d943b14380eabfe..aaa95780af0d8dcd6f8cd1c08d54d953d924639b 100644
--- a/content/3.defense-systems/abic.md
+++ b/content/3.defense-systems/abic.md
@@ -13,23 +13,27 @@ tableColumns:
---
# AbiC
-The AbiC system is composed of one protein: AbiC.
-Here is an example found in the RefSeq database:
+## Example of genomic structure
+
+The AbiC is composed of 1 protein: AbiC.
+
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiC system in the genome of *Enterococcus faecium* (GCF_012933295.2) is composed of 1 protein: AbiC (WP_098388098.1).
+The AbiC system in *Cupriavidus pauculus* (GCF_008693385.1, NZ_CP044066) is composed of 1 protein: AbiC (WP_150373977.1)
## Distribution of the system among prokaryotes
-The AbiC system is present in a total of 110 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiC is detected in 91 genomes (0.4 %).
+
+The system was detected in 57 different species.
-Among the 22k complete genomes of RefSeq, this system is present in 196 genomes (0.9 %).
+{max-width=750px}
-{max-width="750"}
+Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.
-*Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
## Structure
diff --git a/content/3.defense-systems/abid.md b/content/3.defense-systems/abid.md
index 155c4c99518f8fad6c36c3d4e141a416f49f54cd..f41523d23aa0cb0364af67c5c369ee186252b381 100644
--- a/content/3.defense-systems/abid.md
+++ b/content/3.defense-systems/abid.md
@@ -13,23 +13,27 @@ tableColumns:
---
# AbiD
-The AbiD system is composed of one protein: AbiD.
-Here is an example found in the RefSeq database:
+## Example of genomic structure
-{max-width="750"}
+The AbiD is composed of 1 protein: AbiD.
-AbiD system in the genome of *Lachnospira eligens* (GCF_020735745.1) is composed of 1 protein: AbiD (WP_041688924.1).
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The AbiD system in *Idiomarina sp. OT37-5b* (GCF_002968395.1, NZ_CP027188) is composed of 1 protein: AbiD (WP_105307479.1)
## Distribution of the system among prokaryotes
-The AbiD system is present in a total of 874 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiD is detected in 2713 genomes (11.9 %).
+
+The system was detected in 964 different species.
-Among the 22k complete genomes of RefSeq, this system is present in 2748 genomes (12.1 %).
+{max-width=750px}
-{max-width="750"}
+Proportion of genome encoding the AbiD system for the 14 phyla with more than 50 genomes in the RefSeq database.
-*Proportion of genome encoding the AbiD system for the 14 phyla with more than 50 genomes in the RefSeq database.*
## Structure
diff --git a/content/3.defense-systems/abie.md b/content/3.defense-systems/abie.md
index b1921a6d5cbd90eb8243da2392243b781a926543..e8f45950fa498daa52fd7a656174d58710993ccf 100644
--- a/content/3.defense-systems/abie.md
+++ b/content/3.defense-systems/abie.md
@@ -25,23 +25,24 @@ Based on this mechanisms, AbiE systems are classified as Type IV Toxin-Antitoxin
## Example of genomic structure
-The AbiE system is composed of 2 proteins: AbiEi_1 and, AbiEii.
+The AbiE is composed of 2 proteins: AbiEii and AbiEi.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiE system in the genome of *Desulfuromonas versatilis* (GCF_019704135.1) is composed of 2 proteins: AbiEi_1 (WP_221251730.1)and, AbiEii (WP_221251731.1).
+The AbiE system in *Halomonas piezotolerans* (GCF_012427705.1, NZ_CP048602) is composed of 2 proteins AbiEi_3 (WP_231125510.1) AbiEii (WP_231125511.1)
## Distribution of the system among prokaryotes
-The AbiE system is present in a total of 962 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiE is detected in 3708 genomes (16.26 %).
-Among the 22k complete genomes of RefSeq, this system is present in 3742 genomes (16.4 %).
+The system was detected in 1107 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abig.md b/content/3.defense-systems/abig.md
index 0bdc0f084b77fe6b92206674a8b2966b5d4cb137..1d85b256b8ba0480f6f9d088bb7c1da199c3a7c3 100644
--- a/content/3.defense-systems/abig.md
+++ b/content/3.defense-systems/abig.md
@@ -13,23 +13,27 @@ tableColumns:
---
# AbiG
-The AbiG system is composed of 2 proteins: AbiGi and, AbiGii.
-Here is an example found in the RefSeq database:
+## Example of genomic structure
+
+The AbiG is composed of 2 proteins: AbiGi and AbiGii.
+
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiG system in the genome of *Streptococcus mutans* (GCF_009738105.1) is composed of 2 proteins: AbiGi (WP_002266883.1)and, AbiGii (WP_002266884.1).
+The AbiG system in *Staphylococcus simulans* (GCF_900474685.1, NZ_LS483313) is composed of 2 proteins AbiGi (WP_103364194.1) AbiGii (WP_070462993.1)
## Distribution of the system among prokaryotes
-The AbiG system is present in a total of 23 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiG is detected in 32 genomes (0.14 %).
-Among the 22k complete genomes of RefSeq, this system is present in 33 genomes (0.1 %).
+The system was detected in 22 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiG system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiG system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abih.md b/content/3.defense-systems/abih.md
index 002d5b969acd03d2a3a45ba3b62f0ae3ae466e26..d85ace09e30015fdf10fa4652b0e79937e5ea43f 100644
--- a/content/3.defense-systems/abih.md
+++ b/content/3.defense-systems/abih.md
@@ -20,23 +20,24 @@ relevantAbstracts:
# AbiH
## Example of genomic structure
-The AbiH system is composed of one protein: AbiH.
+The AbiH is composed of 1 protein: AbiH.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiH system in the genome of *Agrobacterium tumefaciens* (GCF_005221405.1) is composed of 1 protein: AbiH (WP_045021548.1).
+The AbiH system in *Bacteroides faecium* (GCF_012113595.1, NZ_CP050831) is composed of 1 protein: AbiH (WP_167962074.1)
## Distribution of the system among prokaryotes
-The AbiH system is present in a total of 408 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiH is detected in 1225 genomes (5.37 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1277 genomes (5.6 %).
+The system was detected in 439 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiH system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiH system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abii.md b/content/3.defense-systems/abii.md
index 950813cea2abca8027f336ef92977f91be7afddf..6a004f1fc436a9282feedf8e9227e2297469c335 100644
--- a/content/3.defense-systems/abii.md
+++ b/content/3.defense-systems/abii.md
@@ -14,23 +14,24 @@ tableColumns:
# AbiI
## Example of genomic structure
-The AbiI system is composed of one protein: AbiI.
+The AbiI is composed of 1 protein: AbiI.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiI system in the genome of *Enterococcus faecalis* (GCF_002814115.1) is composed of 1 protein: AbiI (WP_002367720.1).
+The AbiI system in *Macrococcus brunensis* (GCF_022343725.1, NZ_CP092179) is composed of 1 protein: AbiI (WP_239034930.1)
## Distribution of the system among prokaryotes
-The AbiI system is present in a total of 8 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiI is detected in 6 genomes (0.03 %).
-Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0.0 %).
+The system was detected in 6 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiI system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiI system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abij.md b/content/3.defense-systems/abij.md
index 2346d58c3f833b970853d0c6f914545ca7e6a0a4..2a60a05365db4321b54c4e834a854f77a38b724a 100644
--- a/content/3.defense-systems/abij.md
+++ b/content/3.defense-systems/abij.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiJ
## Example of genomic structure
-The AbiJ system is composed of one protein: AbiJ.
+The AbiJ is composed of 1 protein: AbiJ.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiJ system in the genome of *Loigolactobacillus backii* (GCF_001663735.1) is composed of 1 protein: AbiJ (WP_068377534.1).
+The AbiJ system in *Marinobacter sp. LQ44* (GCF_001447155.2, NZ_CP014754) is composed of 1 protein: AbiJ (WP_058091398.1)
## Distribution of the system among prokaryotes
-The AbiJ system is present in a total of 321 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiJ is detected in 686 genomes (3.01 %).
-Among the 22k complete genomes of RefSeq, this system is present in 807 genomes (3.5 %).
+The system was detected in 261 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiJ system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiJ system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abik.md b/content/3.defense-systems/abik.md
index 8c20ae2c4daaad4ba0f690a33f7ae188ee4ea3fa..284f5d9d62f7bba81268f16380f9bc3bcd652453 100644
--- a/content/3.defense-systems/abik.md
+++ b/content/3.defense-systems/abik.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiK
## Example of genomic structure
-The AbiK system is composed of one protein: AbiK.
+The AbiK is composed of 1 protein: AbiK.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiK system in the genome of *Lactococcus lactis* (GCF_002078995.2) is composed of 1 protein: AbiK (WP_081199340.1).
+The AbiK system in *Lactobacillus ultunensis* (GCF_016647595.1, NZ_CP059829) is composed of 1 protein: AbiK (WP_007126124.1)
## Distribution of the system among prokaryotes
-The AbiK system is present in a total of 32 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiK is detected in 107 genomes (0.47 %).
-Among the 22k complete genomes of RefSeq, this system is present in 107 genomes (0.5 %).
+The system was detected in 32 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiK system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiK system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abil.md b/content/3.defense-systems/abil.md
index c1ead981644b97b4db21601a89a96f03a3447ef1..5f3fba645e30f51a3cdb466d3c3b03a0e9342d59 100644
--- a/content/3.defense-systems/abil.md
+++ b/content/3.defense-systems/abil.md
@@ -30,23 +30,24 @@ Abortive infection. the PF13707 domain includes the RloB protein that is found w
## Example of genomic structure
-The AbiL system is composed of 2 proteins: AbiLii2 and, AbiLi2.
+The AbiL is composed of 2 proteins: AbiLi and AbiLii.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiL system in the genome of *Fusobacterium nucleatum* (GCF_003019785.1) is composed of 2 proteins: AbiLii2 (WP_005903821.1)and, AbiLi2 (WP_005903823.1).
+The AbiL system in *Sulfurimonas sp. SWIR-19* (GCF_020410885.1, NZ_CP084578) is composed of 2 proteins AbiLi2 (WP_226066409.1) AbiLii2 (WP_226066410.1)
## Distribution of the system among prokaryotes
-The AbiL system is present in a total of 456 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiL is detected in 188 genomes (0.82 %).
-Among the 22k complete genomes of RefSeq, this system is present in 783 genomes (3.4 %).
+The system was detected in 126 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiL system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiL system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abin.md b/content/3.defense-systems/abin.md
index 63964f3f8408a74aa27fdd5ed74e323b03c9c71e..2599e99614b10192126c7e1ae9c0601de2e201ed 100644
--- a/content/3.defense-systems/abin.md
+++ b/content/3.defense-systems/abin.md
@@ -14,23 +14,24 @@ tableColumns:
# AbiN
## Example of genomic structure
-The AbiN system is composed of one protein: AbiN.
+The AbiN is composed of 1 protein: AbiN.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiN system in the genome of *Enterococcus faecalis* (GCF_016743895.1) is composed of 1 protein: AbiN (WP_002384355.1).
+The AbiN system in *Listeria innocua* (GCF_023078395.1, NZ_CP095723) is composed of 1 protein: AbiN (WP_238929053.1)
## Distribution of the system among prokaryotes
-The AbiN system is present in a total of 51 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiN is detected in 165 genomes (0.72 %).
-Among the 22k complete genomes of RefSeq, this system is present in 167 genomes (0.7 %).
+The system was detected in 52 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiN system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiN system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abio.md b/content/3.defense-systems/abio.md
index 116db721b06e24cc5282885e5c9b8e764a094b77..88ef25904ea344cb8c22606f2a755893559e3c4e 100644
--- a/content/3.defense-systems/abio.md
+++ b/content/3.defense-systems/abio.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiO
## Example of genomic structure
-The AbiO system is composed of one protein: AbiO.
+The AbiO is composed of 1 protein: AbiO.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiO system in the genome of *Pasteurella multocida* (GCF_016313205.1) is composed of 1 protein: AbiO (WP_005752771.1).
+The AbiO system in *Pantoea agglomerans* (GCF_004117135.1, NZ_CP034477) is composed of 1 protein: AbiO (WP_129063585.1)
## Distribution of the system among prokaryotes
-The AbiO system is present in a total of 67 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiO is detected in 100 genomes (0.44 %).
-Among the 22k complete genomes of RefSeq, this system is present in 109 genomes (0.5 %).
+The system was detected in 61 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiO system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiO system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abip2.md b/content/3.defense-systems/abip2.md
index a1a13f67ba62d08a6360a74daddb679ae707892e..0b4bd61664398adcdb516e1f8dea26caefe62b3b 100644
--- a/content/3.defense-systems/abip2.md
+++ b/content/3.defense-systems/abip2.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiP2
## Example of genomic structure
-The AbiP2 system is composed of one protein: AbiP2.
+The AbiP2 is composed of 1 protein: AbiP2.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiP2 system in the genome of *Casimicrobium huifangae* (GCF_009746125.1) is composed of 1 protein: AbiP2 (WP_156862066.1).
+The AbiP2 system in *Halomonas alkaliphila* (GCF_003612795.1, NZ_CP024811) is composed of 1 protein: AbiP2 (WP_120386816.1)
## Distribution of the system among prokaryotes
-The AbiP2 system is present in a total of 98 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiP2 is detected in 299 genomes (1.31 %).
-Among the 22k complete genomes of RefSeq, this system is present in 299 genomes (1.3 %).
+The system was detected in 96 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiP2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiP2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abiq.md b/content/3.defense-systems/abiq.md
index 4408fb700f7bdecb94d3eff0b9d66c3743f61f3f..b9bec1ad48e4788b2e57cfe91d8b3fc945f14a62 100644
--- a/content/3.defense-systems/abiq.md
+++ b/content/3.defense-systems/abiq.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiQ
## Example of genomic structure
-The AbiQ system is composed of one protein: AbiQ.
+The AbiQ is composed of 1 protein: AbiQ.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiQ system in the genome of *Enterococcus sp.* (GCF_003812305.1) is composed of 1 protein: AbiQ (WP_123866849.1).
+The AbiQ system in *Planococcus faecalis* (GCF_002009235.1, NZ_CP019401) is composed of 1 protein: AbiQ (WP_078080483.1)
## Distribution of the system among prokaryotes
-The AbiQ system is present in a total of 110 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiQ is detected in 258 genomes (1.13 %).
-Among the 22k complete genomes of RefSeq, this system is present in 262 genomes (1.1 %).
+The system was detected in 111 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiQ system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiQ system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abir.md b/content/3.defense-systems/abir.md
index 06b6bb936e4697314be2d1a5c5e01a7747ce0255..5336f7b18607989eb44908cdfe9b6d0073a0a9f1 100644
--- a/content/3.defense-systems/abir.md
+++ b/content/3.defense-systems/abir.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiR
## Example of genomic structure
-The AbiR system is composed of 3 proteins: AbiRc, AbiRb and, AbiRa.
+The AbiR is composed of 3 proteins: AbiRa, AbiRb and AbiRc.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiR system in the genome of *Pediococcus pentosaceus* (GCF_019614475.1) is composed of 3 proteins: AbiRa (WP_220689027.1), AbiRb (WP_011673124.1)and, AbiRc (WP_011673125.1).
+The AbiR system in *Clostridium perfringens* (GCF_016027155.1, NZ_CP065677) is composed of 3 proteins AbiRc (WP_049039794.1) AbiRb (WP_049039795.1) AbiRa (WP_049039796.1)
## Distribution of the system among prokaryotes
-The AbiR system is present in a total of 31 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiR is detected in 51 genomes (0.22 %).
-Among the 22k complete genomes of RefSeq, this system is present in 56 genomes (0.2 %).
+The system was detected in 28 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abit.md b/content/3.defense-systems/abit.md
index 78fc17247fa76a02d297e6cf534e018dfb156b00..943c0852f427dc08332d359f85cd3c234e134d65 100644
--- a/content/3.defense-systems/abit.md
+++ b/content/3.defense-systems/abit.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiT
## Example of genomic structure
-The AbiT system is composed of 2 proteins: AbiTii and, AbiTi.
+The AbiT is composed of 2 proteins: AbiTi and AbiTii.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiT system in the genome of *Sphaerochaeta associata* (GCF_022869165.1) is composed of 2 proteins: AbiTi (WP_244771454.1)and, AbiTii (WP_244771455.1).
+The AbiT system in *Bdellovibrio bacteriovorus* (GCF_000317895.1, NC_019567) is composed of 2 proteins AbiTii (WP_051026283.1) AbiTi (WP_041577337.1)
## Distribution of the system among prokaryotes
-The AbiT system is present in a total of 5 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiT is detected in 8 genomes (0.04 %).
-Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0.0 %).
+The system was detected in 6 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiT system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiT system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abiu.md b/content/3.defense-systems/abiu.md
index 3b5dd7b986e4cae8106c1645d82841b74989a2f0..a94e3073128f47dfaa63a20a0941705a49f2b63a 100644
--- a/content/3.defense-systems/abiu.md
+++ b/content/3.defense-systems/abiu.md
@@ -28,23 +28,24 @@ The molecular mechanism of AbiU is not well understood. It was shown that cells
## Example of genomic structure
-The AbiU system is composed of one protein: AbiU.
+The AbiU is composed of 1 protein: AbiU.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiU system in the genome of *Fulvivirga lutea* (GCF_017068455.1) is composed of 1 protein: AbiU (WP_205721428.1).
+The AbiU system in *Bacillus subtilis* (GCF_001889385.1, NZ_CP018295) is composed of 1 protein: AbiU (WP_072589761.1)
## Distribution of the system among prokaryotes
-The AbiU system is present in a total of 390 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiU is detected in 950 genomes (4.17 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1017 genomes (4.5 %).
+The system was detected in 389 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiU system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiU system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abiv.md b/content/3.defense-systems/abiv.md
index 93da9479699cd81c2791b99d28399ff4de0a3170..050846424fec937a27a4fb04b7f0bddb19b9d8c9 100644
--- a/content/3.defense-systems/abiv.md
+++ b/content/3.defense-systems/abiv.md
@@ -15,23 +15,24 @@ tableColumns:
# AbiV
## Example of genomic structure
-The AbiV system is composed of one protein: AbiV.
+The AbiV is composed of 1 protein: AbiV.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiV system in the genome of *Lactococcus cremoris* (GCF_017376415.1) is composed of 1 protein: AbiV (WP_011834704.1).
+The AbiV system in *Bacillus mycoides* (GCF_018739365.1, NZ_CP035984) is composed of 1 protein: AbiV (WP_070128168.1)
## Distribution of the system among prokaryotes
-The AbiV system is present in a total of 76 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiV is detected in 97 genomes (0.43 %).
-Among the 22k complete genomes of RefSeq, this system is present in 126 genomes (0.6 %).
+The system was detected in 61 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiV system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiV system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/abiz.md b/content/3.defense-systems/abiz.md
index 2757a76e57c0c6ed45aca295dfb355711d3fe45e..5bfcd31da00c160430dec3bbe335bc5fe0e84d12 100644
--- a/content/3.defense-systems/abiz.md
+++ b/content/3.defense-systems/abiz.md
@@ -14,23 +14,24 @@ tableColumns:
# AbiZ
## Example of genomic structure
-The AbiZ system is composed of one protein: AbiZ.
+The AbiZ is composed of 1 protein: AbiZ.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-AbiZ system in the genome of *Streptococcus oralis* (GCF_019334565.1) is composed of 1 protein: AbiZ (WP_215804505.1).
+The AbiZ system in *Fusobacterium pseudoperiodonticum* (GCF_002763695.1, NZ_CP024700) is composed of 1 protein: AbiZ (WP_099987858.1)
## Distribution of the system among prokaryotes
-The AbiZ system is present in a total of 191 different species.
+Among the 22,803 complete genomes of RefSeq, the AbiZ is detected in 118 genomes (0.52 %).
-Among the 22k complete genomes of RefSeq, this system is present in 831 genomes (3.6 %).
+The system was detected in 97 different species.
{max-width=750px}
-*Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/aditi.md b/content/3.defense-systems/aditi.md
index ea0db2cba943cb900a88f5437262aede6430fc4b..ff6c7c2c79c93ee578b4391f283a35c36075d88d 100644
--- a/content/3.defense-systems/aditi.md
+++ b/content/3.defense-systems/aditi.md
@@ -15,23 +15,24 @@ tableColumns:
# Aditi
## Example of genomic structure
-The Aditi system is composed of 2 proteins: DitB and, DitA.
+The Aditi is composed of 2 proteins: DitA and DitB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Aditi system in the genome of *Fusobacterium hwasookii* (GCF_001455105.1) is composed of 2 proteins: DitB (WP_029491896.1)and, DitA (WP_029491897.1).
+The Aditi system in *Streptococcus suis* (GCF_003288175.1, NZ_CP025419) is composed of 2 proteins DitB (WP_002937368.1) DitA (WP_002937371.1)
## Distribution of the system among prokaryotes
-The Aditi system is present in a total of 18 different species.
+Among the 22,803 complete genomes of RefSeq, the Aditi is detected in 40 genomes (0.18 %).
-Among the 22k complete genomes of RefSeq, this system is present in 40 genomes (0.2 %).
+The system was detected in 19 different species.
{max-width=750px}
-*Proportion of genome encoding the Aditi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Aditi system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/avs.md b/content/3.defense-systems/avs.md
index 05c3952d19179167e5462a3ad1c8b5019b07e755..16d148c54e76e95d4748e9f835aeebd72d8bc645 100644
--- a/content/3.defense-systems/avs.md
+++ b/content/3.defense-systems/avs.md
@@ -30,39 +30,40 @@ Upon binding to their cognate phage protein, Avs1-4 assemble into tetramers that
## Example of genomic structure
-The Avs system have been describe in a total of 5 subsystems.
+A total of 5 subsystems have been described for the Avs system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Avs_I subsystem in the genome of *Vibrio sp.* (GCF_905175355.1) is composed of 3 proteins: Avs1A (WP_208445041.1), Avs1B (WP_208445042.1)and, Avs1C (WP_108173272.1).
+The Avs_I system in *Priestia aryabhattai* (GCF_022811825.1, NZ_CP064098) is composed of 3 proteins Avs1C (WP_243495694.1) Avs1B (WP_243495695.1) Avs1A (WP_243495696.1)
-{max-width=750px}
+{max-width=750px}
-Avs_II subsystem in the genome of *Escherichia coli* (GCF_018884505.1) is composed of 1 protein: Avs2A (WP_032199984.1).
+The Avs_II system in *Haloferax volcanii* (GCF_000025685.1, NC_013967) is composed of 1 protein: Avs2A (WP_013035348.1)
-{max-width=750px}
+{max-width=750px}
-Avs_III subsystem in the genome of *Enterobacter cancerogenus* (GCF_002850575.1) is composed of 2 proteins: Avs3B (WP_199559884.1)and, Avs3A (WP_101737373.1).
+The Avs_III system in *Chryseobacterium indologenes* (GCF_002208925.2, NZ_CP022058) is composed of 2 proteins Avs3B (WP_002978689.1) Avs3A (WP_088583894.1)
-{max-width=750px}
+{max-width=750px}
-Avs_IV subsystem in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: Avs4A (WP_000240574.1).
+The Avs_IV system in *Dysosmobacter welbionis* (GCF_005121165.3, NZ_CP034413) is composed of 1 protein: Avs4A (WP_136890703.1)
-{max-width=750px}
+{max-width=750px}
-Avs_V subsystem in the genome of *Leclercia adecarboxylata* (GCF_006171285.1) is composed of 1 protein: Avs5A (WP_139565349.1).
+The Avs_V system in *Klebsiella variicola* (GCF_015287155.1, NZ_CP063912) is composed of 1 protein: Avs5A (WP_131026359.1)
## Distribution of the system among prokaryotes
-The Avs system is present in a total of 363 different species.
+Among the 22,803 complete genomes of RefSeq, the Avs is detected in 978 genomes (4.29 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1046 genomes (4.6 %).
+The system was detected in 366 different species.
{max-width=750px}
-*Proportion of genome encoding the Avs system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Avs system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
@@ -80,61 +81,6 @@ dataUrls:
::
-## Structure
-
-### Avs_I
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /avs/AVAST_I,AVAST_I__Avs1A,0,V-plddts_85.07081.pdb
- - /avs/AVAST_I,AVAST_I__Avs1B,0,V-plddts_80.96481.pdb
- - /avs/AVAST_I,AVAST_I__Avs1C,0,V-plddts_81.74849.pdb
----
-::
-
-### Avs_II
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /avs/AVAST_II__Avs2A-plddts_86.07393.pdb
----
-::
-
-### Avs_III
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /avs/AVAST_III,AVAST_III__Avs3A,0,V-plddts_81.87773.pdb
- - /avs/AVAST_III,AVAST_III__Avs3B,0,V-plddts_71.16048.pdb
----
-::
-
-### Avs_IV
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /avs/AVAST_IV__Avs4A-plddts_87.35544.pdb
----
-::
-
-### Avs_V
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /avs/AVAST_V__Avs5A-plddts_89.56857.pdb
----
-::
-
## Experimental validation
<mermaid>
diff --git a/content/3.defense-systems/azaca.md b/content/3.defense-systems/azaca.md
index 9394c42e7f9c1f5674a264db3f2ab6a58e6e841a..87bb9fd3296b3bc889eec4f3e733b314c4d18103 100644
--- a/content/3.defense-systems/azaca.md
+++ b/content/3.defense-systems/azaca.md
@@ -15,23 +15,24 @@ tableColumns:
# Azaca
## Example of genomic structure
-The Azaca system is composed of 3 proteins: ZacA, ZacB and, ZacC.
+The Azaca is composed of 3 proteins: ZacA, ZacB and ZacC.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Azaca system in the genome of *Ornithinimicrobium sp.* (GCF_023923205.1) is composed of 3 proteins: ZacA (WP_252620090.1), ZacB (WP_252620091.1)and, ZacC (WP_252620092.1).
+The Azaca system in *Gordonia polyisoprenivorans* (GCF_018135605.1, NZ_CP073075) is composed of 3 proteins ZacC (WP_006372053.1) ZacB (WP_006372052.1) ZacA (WP_006372051.1)
## Distribution of the system among prokaryotes
-The Azaca system is present in a total of 156 different species.
+Among the 22,803 complete genomes of RefSeq, the Azaca is detected in 203 genomes (0.89 %).
-Among the 22k complete genomes of RefSeq, this system is present in 206 genomes (0.9 %).
+The system was detected in 166 different species.
{max-width=750px}
-*Proportion of genome encoding the Azaca system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Azaca system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/borvo.md b/content/3.defense-systems/borvo.md
index 685ddb6dbcdf3bceac2001da71af2bc1eae16cc5..9cd6a0646ba259b179e35d700f42bcce6f17d199 100644
--- a/content/3.defense-systems/borvo.md
+++ b/content/3.defense-systems/borvo.md
@@ -29,23 +29,24 @@ Mutations in the phage DNA polymerase can allow phages to escape Borvo defense,
## Example of genomic structure
-The Borvo system is composed of one protein: BovA.
+The Borvo is composed of 1 protein: BovA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Borvo system in the genome of *Brevundimonas sp.* (GCF_002002865.1) is composed of 1 protein: BovA_addition (WP_077354142.1).
+The Borvo system in *Enterobacter cloacae complex sp. ECL78* (GCF_019056615.1, NZ_CP077660) is composed of 1 protein: BovA (WP_126517459.1)
## Distribution of the system among prokaryotes
-The Borvo system is present in a total of 348 different species.
+Among the 22,803 complete genomes of RefSeq, the Borvo is detected in 177 genomes (0.78 %).
-Among the 22k complete genomes of RefSeq, this system is present in 650 genomes (2.9 %).
+The system was detected in 79 different species.
{max-width=750px}
-*Proportion of genome encoding the Borvo system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Borvo system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/brex.md b/content/3.defense-systems/brex.md
index 255e8c7fe03295c8ba71002f67dfa972ef288aaa..15d782af27b34d7cfbf68b64403a40441291e294 100644
--- a/content/3.defense-systems/brex.md
+++ b/content/3.defense-systems/brex.md
@@ -37,8 +37,6 @@ To date, BREX molecular mechanism remains to be described.
## Example of genomic structure
-There are 6 subsystems described for the BREX system.
-
BREX systems necessarily include the pglZ gene (encoding for a putative alkaline phosphatase), which is accompanied by either brxC or pglY. These two genes share only a distant homology but have been hypothesized to fulfill the same function among the different BREX subtypes :ref{doi=10.15252/embj.201489455}.
Goldfarb and colleagues reported a 6-gene cassette from *Bacillus cereus* as being the model for BREX Type 1. BREX Type 1 are the most widespread BREX systems, and present two core genes (pglZ and brxC).  Four other genes  are associated with BREX Type 1 : *pglX (*encoding for a putative methyltransferase),  *brxA (*encoding an RNA-binding anti-termination protein)*, brxB (*unknown functio*n), brxC (*encoding for a protein with ATP-binding domain) and *brxL* (encoding for a putative protease) :ref{doi=10.15252/embj.201489455,10.1093/nar/gkaa290}.
@@ -47,25 +45,44 @@ Type 2 BREX systems include the system formerly known as Pgl, which is comprised
Although 4 additional BREX subtypes have been proposed, BREX Type 1 and Type 2 remain the only ones to be experimentally validated. A detailed description of the other subtypes can be found in :ref{doi=10.15252/embj.201489455}.
-Here is some example found in the RefSeq database:
+A total of 6 subsystems have been described for the BREX system.
+
+Here is some examples found in the RefSeq database:
+
+{max-width=750px}
+
+The BREX_I system in *Mycobacterium kubicae* (GCF_015689175.1, NZ_CP065047) is composed of 6 proteins brxA_DUF1819 (WP_241007777.1) brxB_DUF1788 (WP_174814228.1) brxC (WP_085074024.1) pglX1 (WP_085074003.1) pglZA (WP_085074004.1) brxL (WP_085074005.1)
+
+{max-width=750px}
+
+The BREX_II system in *Nocardia terpenica* (GCF_002568625.1, NZ_CP023778) is composed of 6 proteins pglW (WP_232535326.1) pglX2 (WP_098693854.1) pglY (WP_098693855.1) pglZ2 (WP_098693856.1) brxD (WP_098693857.1) brxHI (WP_098693858.1)
-{max-width=750px}
+{max-width=750px}
-BREX_I subsystem in the genome of *Kaistella sp.* (GCF_020410745.1) is composed of 6 proteins: brxL (WP_226063319.1), pglZA (WP_226063320.1), pglX1 (WP_226063321.1), brxC (WP_226063322.1), brxB_DUF1788 (WP_226063323.1)and, brxA_DUF1819 (WP_226063324.1).
+The BREX_III system in *Rubinisphaera brasiliensis* (GCF_000165715.2, NC_015174) is composed of 5 proteins pglZ3 (WP_013627487.1) brxHII (WP_013627488.1) pglXI (WP_013627489.1) brxC (WP_041397812.1) brxF (WP_218916504.1)
-{max-width=750px}
+{max-width=750px}
-BREX_II subsystem in the genome of *Streptomyces hygroscopicus* (GCF_001447075.1) is composed of 5 proteins: brxD (WP_058082289.1), pglZ2 (WP_058082290.1), pglY (WP_058082291.1), pglX2 (WP_058082292.1)and, pglW (WP_237280966.1).
+The BREX_IV system in *Olsenella sp. oral taxon 807* (GCF_001189515.2, NZ_CP012069) is composed of 4 proteins brxL (WP_050344523.1) pglZ4 (WP_172674480.1) brxC4 (WP_050340978.1) brxP (WP_050340980.1)
+
+{max-width=750px}
+
+The BREX_V system in *Heyndrickxia vini* (GCF_016772275.1, NZ_CP065425) is composed of 7 proteins brxHII (WP_202780866.1) pglZA (WP_202778092.1) pglX1 (WP_202778093.1) pglX1 (WP_202778094.1) brxC (WP_202778095.1) brxB_DUF1788 (WP_246483846.1) brxA_DUF1819 (WP_202778096.1)
+
+{max-width=750px}
+
+The BREX_VI system in *Virgibacillus halodenitrificans* (GCF_001878675.1, NZ_CP017962) is composed of 8 proteins brxE (WP_071648637.1) brxA_DUF1819 (WP_071648638.1) brxB_DUF1788 (WP_071648639.1) brxC (WP_197035844.1) pglX1 (WP_071648641.1) pglZA (WP_071648642.1) brxD (WP_071648643.1) brxHI (WP_071648644.1)
## Distribution of the system among prokaryotes
-The BREX system is present in a total of 732 different species.
+Among the 22,803 complete genomes of RefSeq, the BREX is detected in 1658 genomes (7.27 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1612 genomes (7.1 %).
+The system was detected in 888 different species.
{max-width=750px}
-*Proportion of genome encoding the BREX system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the BREX system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/bsta.md b/content/3.defense-systems/bsta.md
index 8d75ac00a30ddabdacaa61235a826daf726c9d58..3f005e1090152424d3cae50a6bb33fc717b136b2 100644
--- a/content/3.defense-systems/bsta.md
+++ b/content/3.defense-systems/bsta.md
@@ -24,23 +24,24 @@ Interestingly, part of the BstA locus appears to encode an anti-BstA genetic ele
## Example of genomic structure
-The BstA system is composed of one protein: BstA.
+The BstA is composed of 1 protein: BstA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-BstA system in the genome of *Providencia rustigianii* (GCF_900635875.1) is composed of 1 protein: BstA (WP_126437212.1).
+The BstA system in *Vibrio harveyi* (GCF_021397735.1, NZ_CP090179) is composed of 1 protein: BstA (WP_038899043.1)
## Distribution of the system among prokaryotes
-The BstA system is present in a total of 81 different species.
+Among the 22,803 complete genomes of RefSeq, the BstA is detected in 236 genomes (1.03 %).
-Among the 22k complete genomes of RefSeq, this system is present in 236 genomes (1.0 %).
+The system was detected in 88 different species.
{max-width=750px}
-*Proportion of genome encoding the BstA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the BstA system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/bunzi.md b/content/3.defense-systems/bunzi.md
index 54138d5816bf90dbac4544fd876617ebc3e0ba0a..1a28925d41ff2aeb9b085477832ca402a1f45784 100644
--- a/content/3.defense-systems/bunzi.md
+++ b/content/3.defense-systems/bunzi.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Bunzi system is composed of 2 proteins: BnzB and, BnzA.
+The Bunzi is composed of 2 proteins: BnzA and BnzB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Bunzi system in the genome of *Mammaliicoccus lentus* (GCF_014070215.1) is composed of 2 proteins: BnzB (WP_107556517.1)and, BnzA (WP_107556516.1).
+The Bunzi system in *Shewanella loihica* (GCF_000016065.1, NC_009092) is composed of 2 proteins BnzB (WP_011866821.1) BnzA (WP_011866822.1)
## Distribution of the system among prokaryotes
-The Bunzi system is present in a total of 86 different species.
+Among the 22,803 complete genomes of RefSeq, the Bunzi is detected in 103 genomes (0.45 %).
-Among the 22k complete genomes of RefSeq, this system is present in 286 genomes (1.3 %).
+The system was detected in 58 different species.
{max-width=750px}
-*Proportion of genome encoding the Bunzi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Bunzi system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/butters_gp30_gp31.md b/content/3.defense-systems/butters_gp30_gp31.md
index 4a9cc52ea54e73e7219f971eef82a118a971e04f..6794f44db70bc52394b550c638b8effcd2441561 100644
--- a/content/3.defense-systems/butters_gp30_gp31.md
+++ b/content/3.defense-systems/butters_gp30_gp31.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The Butters_gp30_gp31 is composed of 2 proteins: Butters_gp30 and Butters_gp31.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The Butters_gp30_gp31 system in *Snodgrassella alvi* (GCF_022870965.1, NZ_CP091515) is composed of 2 proteins Butters_gp31 (WP_025330184.1) CarolAnn_gp44 (WP_144353282.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the Butters_gp30_gp31 is detected in 38 genomes (0.17 %).
+
+The system was detected in 34 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the Butters_gp30_gp31 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### Butters_gp30_gp31
diff --git a/content/3.defense-systems/butters_gp57r.md b/content/3.defense-systems/butters_gp57r.md
index e619aa40bb4929b72ba85357ca2829fa679157e7..2e6e5d61436c3ccd1ab8aec56808cf8911458e66 100644
--- a/content/3.defense-systems/butters_gp57r.md
+++ b/content/3.defense-systems/butters_gp57r.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The Butters_gp57r is composed of 1 protein: gp57r.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The Butters_gp57r system in *Mycobacteroides immunogenum* (GCF_001605725.1, NZ_CP011530) is composed of 1 protein: gp57r (WP_043080133.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the Butters_gp57r is detected in 10 genomes (0.04 %).
+
+The system was detected in 7 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the Butters_gp57r system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### Butters_gp57r
diff --git a/content/3.defense-systems/caprel.md b/content/3.defense-systems/caprel.md
index f4092172b81c4ec5ff5e64d00e55ac624afd920a..b57785361cfc1adf41432d9eb9b8a40b80ad910b 100644
--- a/content/3.defense-systems/caprel.md
+++ b/content/3.defense-systems/caprel.md
@@ -27,23 +27,24 @@ Different CapRel homologues confer defense against different phages, suggesting
## Example of genomic structure
-The CapRel system is composed of one protein: CapRel.
+The CapRel is composed of 1 protein: CapRel.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-CapRel system in the genome of *Escherichia coli* (GCF_003856995.1) is composed of 1 protein: CapRel (WP_000526244.1).
+The CapRel system in *Campylobacter sp. RM12175* (GCF_002139875.1, NZ_CP018793) is composed of 1 protein: CapRel (WP_086315994.1)
## Distribution of the system among prokaryotes
-The CapRel system is present in a total of 202 different species.
+Among the 22,803 complete genomes of RefSeq, the CapRel is detected in 398 genomes (1.75 %).
-Among the 22k complete genomes of RefSeq, this system is present in 407 genomes (1.8 %).
+The system was detected in 217 different species.
{max-width=750px}
-*Proportion of genome encoding the CapRel system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the CapRel system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/card_nlr.md b/content/3.defense-systems/card_nlr.md
index 6e30f08afad19cc002fa87024a8fa28d00cf67a0..37a33fce5a41f39aa18e2a57d24e65af762a546b 100644
--- a/content/3.defense-systems/card_nlr.md
+++ b/content/3.defense-systems/card_nlr.md
@@ -13,6 +13,43 @@ tableColumns:
## To do
+## Example of genomic structure
+
+A total of 5 subsystems have been described for the CARD_NLR system.
+
+Here is some examples found in the RefSeq database:
+
+{max-width=750px}
+
+The CARD_NLR_Endonuclease system in *Spirosoma montaniterrae* (GCF_001988955.1, NZ_CP014263) is composed of 4 proteins Trypsin (WP_077131797.1) CARD_Protease_new (WP_077131798.1) NLR_new (WP_157579217.1) Endonuclease (WP_083732853.1)
+
+{max-width=750px}
+
+The CARD_NLR_GasderMIN system in *Lysobacter enzymogenes* (GCF_005954665.1, NZ_CP040656) is composed of 4 proteins bGSDM (WP_057949280.1) Trypsin_new (WP_158229849.1) CARD_Protease (WP_175429318.1) NLR_new (WP_057949283.1)
+
+{max-width=750px}
+
+The CARD_NLR_Phospho system in *Achromobacter deleyi* (GCF_013116765.2, NZ_CP074375) is composed of 4 proteins Trypsin_Phospho (WP_171663676.1) Trypsin_new (WP_171663675.1) CARD_Protease_supposed (WP_171663674.1) NLR_new (WP_171663673.1)
+
+{max-width=750px}
+
+The CARD_NLR_Subtilase system in *Mesorhizobium sp. L-8-3* (GCF_016756615.1, NZ_AP023262) is composed of 4 proteins Subtilase (WP_202329294.1) Trypsin_new (WP_202305630.1) CARD_Protease_supposed (WP_202305632.1) NLR_IMG (WP_202329295.1)
+
+{max-width=750px}
+
+The CARD_NLR_like system in *Sphingomonas sanguinis* (GCF_019297835.1, NZ_CP079203) is composed of 4 proteins Subtilase (WP_219018701.1) CARD_Protease_new (WP_219018702.1) NLR_new (WP_219018703.1) Endonuclease (WP_219021412.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the CARD_NLR is detected in 80 genomes (0.35 %).
+
+The system was detected in 57 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the CARD_NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Relevant abstract
::relevant-abstracts
---
diff --git a/content/3.defense-systems/cas.md b/content/3.defense-systems/cas.md
new file mode 100644
index 0000000000000000000000000000000000000000..665e5b5cab13b0b4aa3fcbb98d2b473e9dfe9e2b
--- /dev/null
+++ b/content/3.defense-systems/cas.md
@@ -0,0 +1,55 @@
+---
+title: CRISPR-Cas
+layout: article
+tableColumns:
+ article:
+ doi: 10.1038/nrmicro3569
+ abstract: |
+ The evolution of CRISPR-cas loci, which encode adaptive immune systems in archaea and bacteria, involves rapid changes, in particular numerous rearrangements of the locus architecture and horizontal transfer of complete loci or individual modules. These dynamics complicate straightforward phylogenetic classification, but here we present an approach combining the analysis of signature protein families and features of the architecture of cas loci that unambiguously partitions most CRISPR-cas loci into distinct classes, types and subtypes. The new classification retains the overall structure of the previous version but is expanded to now encompass two classes, five types and 16 subtypes. The relative stability of the classification suggests that the most prevalent variants of CRISPR-Cas systems are already known. However, the existence of rare, currently unclassifiable variants implies that additional types and subtypes remain to be characterized.
+---
+
+# CRISPR-Cas
+
+For the CRISPR-Cas system, a good place to start is the [Wikipedia page](https://en.wikipedia.org/wiki/CRISPR)
+
+## Example of genomic structure
+
+CRISPR-Cas systems have been classified in 6 different families :ref{doi=10.1038/s41579-019-0299-x}.
+Each family is composed of different subtypes. For example, Type I CRISPR is composed of 7 subtypes: I-A to I-G.
+
+Here is example of each of the 6 family found in the RefSeq database:
+
+{max-width=750px}
+
+The CAS_Class1-Subtype-I-E system in *Citrobacter sp. RHBSTW-00017* (GCF_013797615.1, NZ_CP056899) is composed of 8 proteins cas3_I_5 (WP_103284157.1) cas8e_I-E_1 (HV037_RS05730) cse2gr11_I-E_2 (HV037_RS05735) cas7_I-E_2 (HV037_RS05740) cas5_I-E_3 (HV037_RS05745) cas6e_I_II_III_IV_V_VI_1 (HV037_RS05750) cas1_I-E_1 (HV037_RS05755) cas2_I-E_2 (HV037_RS05760)
+
+{max-width=750px}
+
+The CAS_Class2-Subtype-II-A system in *Streptococcus agalactiae* (GCF_001190885.1, NZ_CP011329) is composed of 4 proteins cas9_II-A_II-B_II-C_3 (SAH002_RS04760) cas1_I_II_III_IV_V_VI_5 (SAH002_RS04765) cas2_I_II_III_IV_V_VI_6 (SAH002_RS04770) csn2_II-A_4 (SAH002_RS04775)
+
+{max-width=750px}
+
+The CAS_Class1-Subtype-III-A system in *Mycobacterium tuberculosis* (GCF_014900005.1, NZ_CP041828) is composed of 9 proteins cas2_I_II_III_IV_V_VI_5 (FPJ80_RS14760) cas1_I_II_III_IV_V_VI_8 (FPJ80_RS14765) csm6_III_2 (FPJ80_RS14770) csm5gr7_III-A_3 (FPJ80_RS14775) csm4gr5_III-A_3 (FPJ80_RS14780) csm3gr7_III-A_1 (FPJ80_RS14785) csm2gr11_III-A_1 (FPJ80_RS14790) cas10_III_7 (FPJ80_RS14795) cas6_I_II_III_IV_V_VI_15 (FPJ80_RS14800)
+
+{max-width=750px}
+
+The CAS_Class1-Subtype-IV-A system in *Shigella flexneri* (GCF_022353685.1, NZ_CP054978) is composed of 5 proteins csf1gr8_IV-A_3 (WP_038989757.1) cas6e_I_II_III_IV_V_VI_3 (WP_038989755.1) csf4_IV-A_1 (WP_016947078.1) csf3gr5_IV-A_1 (WP_004181864.1) csf2gr7_IV-A_1 (WP_029505552.1)
+
+
+{max-width=750px}
+
+The CAS_Class2-Subtype-V-A system in *Francisella tularensis* (GCF_001865695.1, NZ_CP016635) is composed of 4 proteins cas2_I_II_III_IV_V_VI_3 (N894_RS07580) cas1_I_II_III_IV_V_VI_1 (N894_RS07585) cas4_V_1 (N894_RS07590) cas12a_V-A_4 (N894_RS07595)
+
+{max-width=750px}
+
+The CAS_Class2-Subtype-VI-A system in *Leptotrichia shahii* (GCF_008327825.1, NZ_AP019827) is composed of 3 proteins cas13a_VI-A_1 (F1564_RS00570) cas1_I_II_III_IV_V_VI_5 (F1564_RS00575) cas2_I_II_III_IV_V_VI_11 (F1564_RS00580)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the AbiC is detected in 8581 genomes (37.63 %).
+
+The system was detected in 2905 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.
diff --git a/content/3.defense-systems/cbass.md b/content/3.defense-systems/cbass.md
index 1c5ab459c007de1a00b764cec6421ed0ea41b97a..06c6bcfcd1d6fb7e7de4c9e6881399b1a5046141 100644
--- a/content/3.defense-systems/cbass.md
+++ b/content/3.defense-systems/cbass.md
@@ -15,35 +15,36 @@ tableColumns:
# CBASS
## Example of genomic structure
-The CBASS system have been describe in a total of 5 subsystems.
+A total of 4 subsystems have been described for the CBASS system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-CBASS_I subsystem in the genome of *Rhizobium leguminosarum* (GCF_002243365.1) is composed of 2 proteins: 4TM_new (WP_094230678.1)and, Cyclase_SMODS (WP_094230679.1).
+The CBASS_I system in *Vibrio fluvialis* (GCF_018140575.1, NZ_CP073273) is composed of 2 proteins Effector_4TM_S_4TM (WP_212571187.1) Cyclase_SMODS (WP_203534033.1)
-{max-width=750px}
+{max-width=750px}
-CBASS_II subsystem in the genome of *Parvularcula bermudensis* (GCF_000152825.2) is composed of 3 proteins: 4TM_new (WP_013299178.1), Cyclase_II (WP_148235131.1)and, AG_E2_Prok-E2_B (WP_013299180.1).
+The CBASS_II system in *Klebsiella oxytoca* (GCF_002072655.1, NZ_CP020358) is composed of 4 proteins Sensing_SAVED (WP_080528222.1) Jab (WP_071681958.1) AG_E1_ThiF (WP_080528223.1) Cyclase_II (WP_061351239.1)
-{max-width=750px}
+{max-width=750px}
-CBASS_III subsystem in the genome of *Methylocella tundrae* (GCF_900749825.1) is composed of 5 proteins: Endonuc_small (WP_134490779.1), Cyclase_SMODS (WP_134490781.1), bacHORMA_2 (WP_134490783.1), HORMA (WP_134490785.1)and, TRIP13 (WP_134490787.1).
+The CBASS_III system in *Conexibacter sp. DBS9H8* (GCF_023330685.1, NZ_CP097128) is composed of 5 proteins Sensing_SAVED (WP_249010498.1) Cyclase_II (WP_249010499.1) bacHORMA_2 (WP_249010500.1) HORMA (WP_249010501.1) TRIP13 (WP_249010502.1)
-{max-width=750px}
+{max-width=750px}
-CBASS_IV subsystem in the genome of *Bacillus sp.* (GCF_022809835.1) is composed of 4 proteins: 2TM_type_IV (WP_243501124.1), QueC (WP_206906219.1), TGT (WP_243501126.1)and, Cyclase_SMODS (WP_243501127.1).
+The CBASS_IV system in *Flavobacterium alkalisoli* (GCF_008000935.1, NZ_CP042831) is composed of 5 proteins OGG (WP_147582669.1) Cyclase_II (WP_147582670.1) TGT (WP_147582671.1) QueC (WP_147582672.1) Effector_2TM_Sa_NUDIX (WP_147582673.1)
## Distribution of the system among prokaryotes
-The CBASS system is present in a total of 1062 different species.
+Among the 22,803 complete genomes of RefSeq, the CBASS is detected in 2914 genomes (12.78 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2938 genomes (12.9 %).
+The system was detected in 1290 different species.
{max-width=750px}
-*Proportion of genome encoding the CBASS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the CBASS system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/charlie_gp32.md b/content/3.defense-systems/charlie_gp32.md
index 78ac40bfaa4af3d98562d8b1dc17d9ac9374d0f3..04aa34b16682cd8d8264636d41a83cb293d7c759 100644
--- a/content/3.defense-systems/charlie_gp32.md
+++ b/content/3.defense-systems/charlie_gp32.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The Charlie_gp32 is composed of 1 protein: gp32.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The Charlie_gp32 system in *Mycobacterium liflandii* (GCF_000026445.2, NC_020133) is composed of 1 protein: gp32 (WP_015355567.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the Charlie_gp32 is detected in 343 genomes (1.5 %).
+
+The system was detected in 47 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the Charlie_gp32 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### Charlie_gp32
diff --git a/content/3.defense-systems/dartg.md b/content/3.defense-systems/dartg.md
index 3a08121a32e4ff82ce43c24b5265cd87386d1e7b..89bf5e39c58c26ba20f0fcc40c980d6c42eb9339 100644
--- a/content/3.defense-systems/dartg.md
+++ b/content/3.defense-systems/dartg.md
@@ -31,23 +31,24 @@ DarT uses NAD+ to ADP-ribosylates tymidines on ssDNA, while DarG catalyses the r
## Example of genomic structure
-The DarTG system is composed of 2 proteins: DarT and, DarG.
+The DarTG is composed of 2 proteins: DarT and DarG.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-DarTG system in the genome of *Mycobacterium tuberculosis* (GCF_904810345.1) is composed of 2 proteins: DarT (WP_003400548.1)and, DarG (WP_003400551.1).
+The DarTG system in *Leptodesmis sichuanensis* (GCF_021379005.1, NZ_CP075171) is composed of 2 proteins DarT (WP_233744308.1) DarG (WP_233744309.1)
## Distribution of the system among prokaryotes
-The DarTG system is present in a total of 356 different species.
+Among the 22,803 complete genomes of RefSeq, the DarTG is detected in 952 genomes (4.17 %).
-Among the 22k complete genomes of RefSeq, this system is present in 955 genomes (4.2 %).
+The system was detected in 386 different species.
{max-width=750px}
-*Proportion of genome encoding the DarTG system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the DarTG system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/dazbog.md b/content/3.defense-systems/dazbog.md
index 0c8e6df7cbdd4a1686238313f4affd431b629387..83f019ea58577af990784b6c5c554e93e8ba4269 100644
--- a/content/3.defense-systems/dazbog.md
+++ b/content/3.defense-systems/dazbog.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Dazbog system is composed of 2 proteins: DzbB and, DzbA.
+The Dazbog is composed of 2 proteins: DzbA and DzbB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Dazbog system in the genome of *Bacillus cereus* (GCF_001518875.1) is composed of 2 proteins: DzbA (WP_082188833.1)and, DzbB (WP_059303380.1).
+The Dazbog system in *Cyanobium gracile* (GCF_000316515.1, NC_019675) is composed of 2 proteins DzbA (WP_015108896.1) DzbB (WP_156818401.1)
## Distribution of the system among prokaryotes
-The Dazbog system is present in a total of 66 different species.
+Among the 22,803 complete genomes of RefSeq, the Dazbog is detected in 55 genomes (0.24 %).
-Among the 22k complete genomes of RefSeq, this system is present in 73 genomes (0.3 %).
+The system was detected in 50 different species.
{max-width=750px}
-*Proportion of genome encoding the Dazbog system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Dazbog system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/dctpdeaminase.md b/content/3.defense-systems/dctpdeaminase.md
index 566ecb0377a69d0df61534ab217c05ea5ca61a17..6cca2256d706b3599a98c22a37866956c52b054f 100644
--- a/content/3.defense-systems/dctpdeaminase.md
+++ b/content/3.defense-systems/dctpdeaminase.md
@@ -31,23 +31,24 @@ The trigger for dCTPdeaminase may be linked to the shutoff of RNAP ($\sigma$ S-d
## Example of genomic structure
-The dCTPdeaminase system is composed of one protein: dCTPdeaminase.
+The dCTPdeaminase is composed of 1 protein: dCTPdeaminase.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-dCTPdeaminase system in the genome of *Vibrio parahaemolyticus* (GCF_009883855.1) is composed of 1 protein: dCTPdeaminase (WP_029845369.1).
+The dCTPdeaminase system in *Pseudomonas entomophila* (GCF_023277925.1, NZ_CP063832) is composed of 1 protein: dCTPdeaminase (WP_248918739.1)
## Distribution of the system among prokaryotes
-The dCTPdeaminase system is present in a total of 269 different species.
+Among the 22,803 complete genomes of RefSeq, the dCTPdeaminase is detected in 501 genomes (2.2 %).
-Among the 22k complete genomes of RefSeq, this system is present in 501 genomes (2.2 %).
+The system was detected in 294 different species.
{max-width=750px}
-*Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/detocs.md b/content/3.defense-systems/detocs.md
index cc4a24bf6097c5b77197b51178bfa23a807136b6..b8e7408cde7a77a286f55e65704d91bcdf069b65 100644
--- a/content/3.defense-systems/detocs.md
+++ b/content/3.defense-systems/detocs.md
@@ -29,54 +29,39 @@ While the genetic architecture of Detocs is similar to that of regulatory two-co
While 80% of Detocs operons encode PNP effectors, in a minority of these operons the PNP is replaced by other domains known to function as cell-killing effectors in bacterial defense systems, including endonuclease and transmembrane-spanning domains. A Detocs operon with a transmembrane α/β hydrolase effector from Enterobacter cloacae JD6301 was able to efficiently protect E. coli against diverse phages (Rousset et al., 2023).
+## Example of genomic structure
+
+A total of 4 subsystems have been described for the Detocs system.
+
+Here is some examples found in the RefSeq database:
+
+{max-width=750px}
+
+The Detocs system in *Vibrio anguillarum* (GCF_002287545.1, NZ_CP023054) is composed of 3 proteins dtcC (WP_019283384.1) dtcB (WP_019283385.1) dtcA (WP_198303352.1)
+
+{max-width=750px}
+
+The Detocs_REase system in *Winogradskyella sp. HaHa_3_26* (GCF_019278425.1, NZ_CP058981) is composed of 3 proteins dtcA (WP_179313105.1) dtcB (WP_179313104.1) dtcC_REase (WP_179313103.1)
+
+{max-width=750px}
+
+The Detocs_TOPRIM system in *Kaistella flava (ex Peng et al. 2021)* (GCF_015191005.1, NZ_CP040442) is composed of 3 proteins dtcA (WP_193813510.1) dtcB (WP_193813511.1) dtcC_TOPRIM (WP_193813512.1)
+
+{max-width=750px}
+
+The Detocs_hydrolase system in *Yersinia canariae* (GCF_009831415.1, NZ_CP043727) is composed of 3 proteins dtcA (WP_159677463.1) dtcB (WP_159677464.1) dtcC_hydrolase (WP_159677465.1)
+
## Distribution of the system among prokaryotes
-Detocs is encoded in Proteobacteria, Bacteroidetes, Firmicutes, Planctomycetes and Chloroflexi phyla.
+Among the 22,803 complete genomes of RefSeq, the Detocs is detected in 215 genomes (0.94 %).
+
+The system was detected in 128 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the Detocs system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
-## Experimental validation
-<mermaid>
-graph LR;
- Rousset_2023[<a href='https://doi.org/10.1016/j.cell.2023.07.020'>Rousset et al., 2023</a>] --> Origin_0
- Origin_0[Vibrio alginolyticus
-<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2645761408'>2645761408</a>, <a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2645761407'>2645761407</a>,
-<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2645761406'>2645761406</a>] --> Expressed_0[Escherichia coli]
- Expressed_0[Escherichia coli] ----> T2 & T4 & T5 & T6
- Millman_2022[<a href='https://doi.org/10.1016/j.chom.2022.09.017'>Millman et al., 2022</a>] --> Origin_1
- Origin_1[ Detocs Hydrolase
-Enterobacter cloacae
-<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2540965173'>2540965173</a>, <a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2540965172'>2540965172</a>,
-<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2540965171'>2540965171</a>] --> Expressed_1[Escherichia coli]
- Expressed_1[Escherichia coli] ----> SECPhi27 & T5 & SECPhi18 & SECPhi6 & T2 & T4 & T7
- subgraph Title1[Reference]
- Rousset_2023
- Millman_2022
-end
- subgraph Title2[System origin]
- Origin_0
- Origin_1
-end
- subgraph Title3[Expression species]
- Expressed_0
- Expressed_1
-end
- subgraph Title4[Phage infected]
- T2
- T4
- T5
- T6
- SECPhi27
- T5
- SECPhi18
- SECPhi6
- T2
- T4
- T7
-end
- style Title1 fill:none,stroke:none,stroke-width:none
- style Title2 fill:none,stroke:none,stroke-width:none
- style Title3 fill:none,stroke:none,stroke-width:none
- style Title4 fill:none,stroke:none,stroke-width:none
-</mermaid>
## Structure
### Detocs
@@ -125,3 +110,48 @@ dataUrl: /detocs/Detocs_hydrolase__dtcC-plddts_89.47253.pdb
---
::
+
+## Experimental validation
+<mermaid>
+graph LR;
+ Rousset_2023[<a href='https://doi.org/10.1016/j.cell.2023.07.020'>Rousset et al., 2023</a>] --> Origin_0
+ Origin_0[Vibrio alginolyticus
+<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2645761408'>2645761408</a>, <a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2645761407'>2645761407</a>,
+<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2645761406'>2645761406</a>] --> Expressed_0[Escherichia coli]
+ Expressed_0[Escherichia coli] ----> T2 & T4 & T5 & T6
+ Millman_2022[<a href='https://doi.org/10.1016/j.chom.2022.09.017'>Millman et al., 2022</a>] --> Origin_1
+ Origin_1[ Detocs Hydrolase
+Enterobacter cloacae
+<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2540965173'>2540965173</a>, <a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2540965172'>2540965172</a>,
+<a href='https://img.jgi.doe.gov/cgi-bin/m/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=2540965171'>2540965171</a>] --> Expressed_1[Escherichia coli]
+ Expressed_1[Escherichia coli] ----> SECPhi27 & T5 & SECPhi18 & SECPhi6 & T2 & T4 & T7
+ subgraph Title1[Reference]
+ Rousset_2023
+ Millman_2022
+end
+ subgraph Title2[System origin]
+ Origin_0
+ Origin_1
+end
+ subgraph Title3[Expression species]
+ Expressed_0
+ Expressed_1
+end
+ subgraph Title4[Phage infected]
+ T2
+ T4
+ T5
+ T6
+ SECPhi27
+ T5
+ SECPhi18
+ SECPhi6
+ T2
+ T4
+ T7
+end
+ style Title1 fill:none,stroke:none,stroke-width:none
+ style Title2 fill:none,stroke:none,stroke-width:none
+ style Title3 fill:none,stroke:none,stroke-width:none
+ style Title4 fill:none,stroke:none,stroke-width:none
+</mermaid>
\ No newline at end of file
diff --git a/content/3.defense-systems/dgtpase.md b/content/3.defense-systems/dgtpase.md
index 208c3406b33ff30c1f0081a2efa1476e06da0e0a..6e19ae2a1d6e3456fac0fb78a2078478947b8d37 100644
--- a/content/3.defense-systems/dgtpase.md
+++ b/content/3.defense-systems/dgtpase.md
@@ -26,23 +26,24 @@ dGTPase degrades dGTP into phosphate-free deoxyguanosine. Phage mutants which ov
## Example of genomic structure
-The dGTPase system is composed of one protein: Sp_dGTPase.
+The dGTPase is composed of 1 protein: Sp_dGTPase.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-dGTPase system in the genome of *Acinetobacter pittii* (GCF_002012285.1) is composed of 1 protein: Sp_dGTPase (WP_213033921.1).
+The dGTPase system in *Citrobacter sp. RHBSTW-00986* (GCF_013783065.1, NZ_CP056202) is composed of 1 protein: Sp_dGTPase (WP_048216953.1)
## Distribution of the system among prokaryotes
-The dGTPase system is present in a total of 353 different species.
+Among the 22,803 complete genomes of RefSeq, the dGTPase is detected in 1531 genomes (6.71 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1532 genomes (6.7 %).
+The system was detected in 449 different species.
-{max-width=750px}
+{max-width=750px}
+
+Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.
-*Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.*
## Structure
diff --git a/content/3.defense-systems/disarm.md b/content/3.defense-systems/disarm.md
index c1453e045021ae9f0b3f65efd5b291588a46a51e..5a731317027e1c75248d36b002befc62c8c3fc86 100644
--- a/content/3.defense-systems/disarm.md
+++ b/content/3.defense-systems/disarm.md
@@ -31,29 +31,33 @@ Hints of these additional mechanisms can be found in recent structural studies,
## Example of genomic structure
+
DISARM is encoded by three core genes: *drmA* (encoding for a protein containing a putative helicase domain)*,* *drmB* (encoding for a protein containing a putative helicase-associated domain), and *drmC* (encoding for a protein containing a phospholipase D/nuclease domain) (1)
These three core genes are accompanied by a methyltransferase, which can be either an adenine methylase (*drmMI*) for class 1 DISARM systems or a cytosine methylase (*drmMII*) for DISARM class 2. Both classes also encode an additional gene (*drmD* for class 1, and *drmE* for class 2).Â
-Here is some example found in the RefSeq database:
+A total of 2 subsystems have been described for the DISARM system.
+
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-DISARM_1 subsystem in the genome of *Pseudomonas aeruginosa* (GCF_009676885.1) is composed of 6 proteins: drmD (WP_023093122.1), drmMI (WP_023115027.1), drmD (WP_023093126.1), drmA (WP_033993408.1), drmB (WP_023093129.1)and, drmC (WP_031637507.1).
+The DISARM_1 system in *Burkholderia pseudomallei* (GCF_001887555.1, NZ_CP016910) is composed of 5 proteins drmD (WP_043276582.1) drmMI (WP_071897987.1) drmA (WP_024430133.1) drmB (WP_043276578.1) drmC (WP_229202442.1)
-{max-width=750px}
+{max-width=750px}
-DISARM_2 subsystem in the genome of *Bacillus paralicheniformis* (GCF_009497935.1) is composed of 5 proteins: drmMII (WP_020450482.1), drmC (WP_020450481.1), drmB (WP_025810358.1), drmA (WP_020450479.1)and, drmE (WP_020450478.1).
+The DISARM_2 system in *Bacillus halotolerans* (GCF_018417515.1, NZ_CP070976) is composed of 5 proteins drmMII (WP_213418185.1) drmC (WP_213418186.1) drmB (WP_213418187.1) drmA (WP_213418188.1) drmE (WP_213418189.1)
## Distribution of the system among prokaryotes
-The DISARM system is present in a total of 214 different species.
+Among the 22,803 complete genomes of RefSeq, the DISARM is detected in 298 genomes (1.31 %).
-Among the 22k complete genomes of RefSeq, this system is present in 341 genomes (1.5 %).
+The system was detected in 201 different species.
{max-width=750px}
-*Proportion of genome encoding the DISARM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the DISARM system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Experimental validation
<mermaid>
diff --git a/content/3.defense-systems/dmdde.md b/content/3.defense-systems/dmdde.md
index a52da2f6f5c4d497bebb2743435f26f6084d4534..582a1782edea5a5814a1417b516aca08ce7aebbe 100644
--- a/content/3.defense-systems/dmdde.md
+++ b/content/3.defense-systems/dmdde.md
@@ -11,23 +11,24 @@ tableColumns:
# DmdDE
## Example of genomic structure
-The DmdDE system is composed of 2 proteins: DdmE and, DdmD.
+The DmdDE is composed of 2 proteins: DdmE and DdmD.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-DdmDE subsystem in the genome of *Vibrio vulnificus* (GCF_002850455.1) is composed of 2 proteins: DdmE (WP_101957190.1)and, DdmD (WP_101957191.1).
+The DdmDE system in *Vibrio coralliilyticus* (GCF_000772065.1, NZ_CP009617) is composed of 2 proteins DdmD (WP_043007104.1) DdmE (WP_043007106.1)
## Distribution of the system among prokaryotes
-The DmdDE system is present in a total of 50 different species.
+Among the 22,803 complete genomes of RefSeq, the DmdDE is detected in 135 genomes (0.59 %).
-Among the 22k complete genomes of RefSeq, this system is present in 145 genomes (0.6 %).
+The system was detected in 50 different species.
{max-width=750px}
-*Proportion of genome encoding the DmdDE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the DmdDE system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/dnd.md b/content/3.defense-systems/dnd.md
index 0c4f171ba047567cfca4041114a0ef3facd6d90a..d6f1900275f5c0a0613e5033a59ddf1efc8294ef 100644
--- a/content/3.defense-systems/dnd.md
+++ b/content/3.defense-systems/dnd.md
@@ -15,27 +15,28 @@ tableColumns:
# Dnd
## Example of genomic structure
-The Dnd system have been describe in a total of 2 subsystems.
+A total of 2 subsystems have been described for the Dnd system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Dnd_ABCDE subsystem in the genome of *Vibrio tritonius* (GCF_001547935.1) is composed of 6 proteins: DndA (WP_068714508.1), DndB (WP_068714510.1), DndC (WP_068714512.1), DndD (WP_068714514.1), DndE (WP_068714516.1)and, DndD (WP_068714526.1).
+The Dnd_ABCDE system in *Streptomyces lividans* (GCF_000739105.1, NZ_CP009124) is composed of 5 proteins DndA (WP_016327563.1) DndB (WP_003972933.1) DndC (WP_003972934.1) DndD (WP_003972935.1) DndE (WP_003972936.1)
-{max-width=750px}
+{max-width=750px}
-Dnd_ABCDEFGH subsystem in the genome of *Vibrio sp.* (GCF_023716625.1) is composed of 8 proteins: DptF (WP_252041715.1), DptG (WP_252041716.1), DptH (WP_252041717.1), DndE (WP_252041720.1), DndD (WP_252041722.1), DndC (WP_252041723.1), DndB (WP_252041724.1)and, DndA (WP_252041725.1).
+The Dnd_ABCDEFGH system in *Shewanella acanthi* (GCF_019457475.1, NZ_CP080413) is composed of 9 proteins DndA (WP_220049638.1) DndB (WP_220049639.1) DndC (WP_220049640.1) DndD (WP_220049642.1) DndE (WP_220049643.1) DndB (WP_220049645.1) DptH (WP_220049650.1) DptG (WP_220052703.1) DptF (WP_220049651.1)
## Distribution of the system among prokaryotes
-The Dnd system is present in a total of 218 different species.
+Among the 22,803 complete genomes of RefSeq, the Dnd is detected in 376 genomes (1.65 %).
-Among the 22k complete genomes of RefSeq, this system is present in 388 genomes (1.7 %).
+The system was detected in 237 different species.
{max-width=750px}
-*Proportion of genome encoding the Dnd system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Dnd system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/dodola.md b/content/3.defense-systems/dodola.md
index c58f0115867db5952b5c41660cf52607e438ba87..15002c7c112d92e025dc4ce9911a9d7f4311bcaa 100644
--- a/content/3.defense-systems/dodola.md
+++ b/content/3.defense-systems/dodola.md
@@ -28,23 +28,24 @@ The molecular mechanism is unknown. DolA contains a DUF6414 domain, and DolB con
## Example of genomic structure
-The Dodola system is composed of 2 proteins: DolA and, DolB.
+The Dodola is composed of 2 proteins: DolA and DolB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Dodola system in the genome of *Streptococcus thermophilus* (GCF_015190465.1) is composed of 2 proteins: DolA (WP_084825722.1)and, DolB (WP_084825723.1).
+The Dodola system in *Lacrimispora saccharolytica* (GCF_000144625.1, NC_014376) is composed of 2 proteins DolA (WP_012104148.1) DolB (WP_012104147.1)
## Distribution of the system among prokaryotes
-The Dodola system is present in a total of 91 different species.
+Among the 22,803 complete genomes of RefSeq, the Dodola is detected in 312 genomes (1.37 %).
-Among the 22k complete genomes of RefSeq, this system is present in 313 genomes (1.4 %).
+The system was detected in 91 different species.
{max-width=750px}
-*Proportion of genome encoding the Dodola system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Dodola system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/dpd.md b/content/3.defense-systems/dpd.md
index 62211f4e698c0441b2b5ee153b5ec4379ec19c55..efa443fa4bc5bfdcf1a469ee9cc737228420869c 100644
--- a/content/3.defense-systems/dpd.md
+++ b/content/3.defense-systems/dpd.md
@@ -12,23 +12,24 @@ tableColumns:
# Dpd
## Example of genomic structure
-The Dpd system is composed of 15 proteins: FolE, QueD, DpdC, DpdA, DpdB, QueC, DpdD, DpdK, DpdJ, DpdI, DpdH, DpdG, DpdF, DpdE and, QueE.
+The Dpd is composed of 15 proteins: DpdA, DpdB, DpdC, DpdD, DpdE, DpdF, DpdG, DpdH, DpdI, DpdJ, DpdK, QueC, QueD, QueE and FolE.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Dpd system in the genome of *Thalassotalea crassostreae* (GCF_001831495.1) is composed of 15 proteins: QueE (WP_068546614.1), DpdE (WP_068546526.1), DpdF (WP_068546528.1), DpdG (WP_068546530.1), DpdH (WP_070795901.1), DpdI (WP_068546533.1), DpdJ (WP_068546534.1), DpdK (WP_082897170.1), DpdD (WP_068546535.1), QueC (WP_068546536.1), DpdB (WP_068546537.1), DpdA (WP_068546538.1), DpdC (WP_157726628.1), QueD (WP_068546540.1)and, FolE (WP_068546542.1).
+The Dpd system in *Colwellia sp. PAMC 20917* (GCF_001767295.1, NZ_CP014944) is composed of 15 proteins FolE (WP_070374315.1) QueD (WP_070374318.1) DpdC (WP_070374319.1) DpdA (WP_070374320.1) DpdB (WP_070374321.1) QueC (WP_070374322.1) DpdD (WP_083277897.1) DpdK (WP_070374324.1) DpdJ (WP_070374325.1) DpdI (WP_070374326.1) DpdH (WP_070374327.1) DpdG (WP_070374328.1) DpdF (WP_070374329.1) DpdE (WP_070374330.1) QueE (WP_197517659.1)
## Distribution of the system among prokaryotes
-The Dpd system is present in a total of 100 different species.
+Among the 22,803 complete genomes of RefSeq, the Dpd is detected in 225 genomes (0.99 %).
-Among the 22k complete genomes of RefSeq, this system is present in 226 genomes (1.0 %).
+The system was detected in 103 different species.
{max-width=750px}
-*Proportion of genome encoding the Dpd system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Dpd system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/drt.md b/content/3.defense-systems/drt.md
index 748644c8741c94fda465adcca6f8401fd7c54cb1..3fce08172b854036a62d9d23cdbb40809ce8188a 100644
--- a/content/3.defense-systems/drt.md
+++ b/content/3.defense-systems/drt.md
@@ -15,51 +15,56 @@ tableColumns:
# DRT
## Example of genomic structure
-The DRT system have been describe in a total of 9 subsystems.
+A total of 9 subsystems have been described for the DRT system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-DRT6 subsystem in the genome of *Methylobacterium sp.* (GCF_003254375.1) is composed of 1 protein: DRT6 (WP_111474389.1).
+The DRT6 system in *Polaribacter sp. L3A8* (GCF_009796785.1, NZ_CP047026) is composed of 1 protein: DRT6 (WP_158838312.1)
-{max-width=750px}
+{max-width=750px}
-DRT8 subsystem in the genome of *Undibacterium sp.* (GCF_009937955.1) is composed of 2 proteins: DRT8b (WP_162060770.1)and, DRT8 (WP_162060771.1).
+The DRT7 system in *Bacillus thuringiensis* (GCF_020809145.1, NZ_CP083117) is composed of 1 protein: DRT7 (WP_016090556.1)
-{max-width=750px}
+{max-width=750px}
-DRT9 subsystem in the genome of *Pseudomonas aeruginosa* (GCF_016864415.1) is composed of 1 protein: DRT9 (WP_071567741.1).
+The DRT8 system in *Vibrio natriegens* (GCF_001680065.1, NZ_CP016349) is composed of 2 proteins DRT8 (WP_065299195.1) DRT8b (WP_155759966.1)
-{max-width=750px}
+{max-width=750px}
-DRT_1 subsystem in the genome of *Vibrio parahaemolyticus* (GCF_000430405.1) is composed of 2 proteins: drt1a (WP_020841728.1)and, drt1b (WP_020841729.1).
+The DRT9 system in *Escherichia coli* (GCF_004801575.1, NZ_CP039298) is composed of 1 protein: DRT9 (WP_211092143.1)
-{max-width=750px}
+{max-width=750px}
-DRT_2 subsystem in the genome of *Klebsiella variicola* (GCF_018324045.1) is composed of 1 protein: drt2 (WP_020244644.1).
+The DRT_1 system in *Vibrio parahaemolyticus* (GCF_013393865.1, NZ_CP040101) is composed of 2 proteins drt1a (WP_179000524.1) drt1b (WP_179000525.1)
-{max-width=750px}
+{max-width=750px}
-DRT_3 subsystem in the genome of *Vibrio mimicus* (GCF_019048845.1) is composed of 2 proteins: drt3a (WP_217011272.1)and, drt3b (WP_217011273.1).
+The DRT_2 system in *Chryseobacterium indoltheticum* (GCF_003815915.1, NZ_CP033929) is composed of 1 protein: drt2 (WP_228421416.1)
-{max-width=750px}
+{max-width=750px}
-DRT_4 subsystem in the genome of *Escherichia albertii* (GCF_003316815.1) is composed of 1 protein: drt4 (WP_103054060.1).
+The DRT_3 system in *Enterobacter sp. JBIWA008* (GCF_019968765.1, NZ_CP074149) is composed of 2 proteins drt3a (WP_223562544.1) drt3b (WP_223562545.1)
-{max-width=750px}
+{max-width=750px}
-DRT_5 subsystem in the genome of *Escherichia coli* (GCF_016904115.1) is composed of 1 protein: drt5 (WP_001524904.1).
+The DRT_4 system in *Vibrio diabolicus* (GCF_002953355.1, NZ_CP014133) is composed of 1 protein: drt4 (WP_104973818.1)
+
+{max-width=750px}
+
+The DRT_5 system in *Klebsiella pasteurii* (GCF_018139045.1, NZ_CP073236) is composed of 1 protein: drt5 (WP_211811523.1)
## Distribution of the system among prokaryotes
-The DRT system is present in a total of 573 different species.
+Among the 22,803 complete genomes of RefSeq, the DRT is detected in 1195 genomes (5.24 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1365 genomes (6.0 %).
+The system was detected in 577 different species.
{max-width=750px}
-*Proportion of genome encoding the DRT system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the DRT system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/druantia.md b/content/3.defense-systems/druantia.md
index 960d3f770b8c28369f495cc8cbf7d69418049970..6179376f5aadde4254af71b0fa4a4c96be8ea46a 100644
--- a/content/3.defense-systems/druantia.md
+++ b/content/3.defense-systems/druantia.md
@@ -15,31 +15,32 @@ tableColumns:
# Druantia
## Example of genomic structure
-The Druantia system have been describe in a total of 3 subsystems.
+A total of 3 subsystems have been described for the Druantia system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Druantia_I subsystem in the genome of *Escherichia coli* (GCF_002220215.1) is composed of 5 proteins: DruA (WP_000549798.1), DruB (WP_001315973.1), DruC (WP_021520530.1), DruD (WP_000455180.1)and, DruE_1 (WP_089180326.1).
+The Druantia_I system in *Serratia fonticola* (GCF_005489985.1, NZ_CP040182) is composed of 5 proteins DruA (WP_071682717.1) DruB (WP_071682718.1) DruC (WP_071682719.1) DruD (WP_071682720.1) DruE_1 (WP_071682721.1)
-{max-width=750px}
+{max-width=750px}
-Druantia_II subsystem in the genome of *Collimonas pratensis* (GCF_001584185.1) is composed of 4 proteins: DruM (WP_082793204.1), DruE_2 (WP_061945149.1), DruG (WP_061945151.1)and, DruF (WP_150119800.1).
+The Druantia_II system in *Klebsiella michiganensis* (GCF_018604105.1, NZ_CP075881) is composed of 4 proteins DruM (WP_045338337.1) DruF (WP_152403866.1) DruG (WP_214632470.1) DruE_2 (WP_152403875.1)
-{max-width=750px}
+{max-width=750px}
-Druantia_III subsystem in the genome of *Acinetobacter baumannii* (GCF_012935125.1) is composed of 2 proteins: DruH (WP_005120035.1)and, DruE_3 (WP_002036795.1).
+The Druantia_III system in *Citrobacter werkmanii* (GCF_002025225.1, NZ_CP019986) is composed of 2 proteins DruE_3 (WP_079225583.1) DruH (WP_079225584.1)
## Distribution of the system among prokaryotes
-The Druantia system is present in a total of 284 different species.
+Among the 22,803 complete genomes of RefSeq, the Druantia is detected in 807 genomes (3.54 %).
-Among the 22k complete genomes of RefSeq, this system is present in 827 genomes (3.6 %).
+The system was detected in 303 different species.
{max-width=750px}
-*Proportion of genome encoding the Druantia system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Druantia system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/dsr.md b/content/3.defense-systems/dsr.md
index 183e491aaeb17c3efdbf79239082a0f1f681b871..0c90ee007d37334378a5cfe2c606ec9a557dfc3b 100644
--- a/content/3.defense-systems/dsr.md
+++ b/content/3.defense-systems/dsr.md
@@ -15,27 +15,28 @@ tableColumns:
# Dsr
## Example of genomic structure
-The Dsr system have been describe in a total of 2 subsystems.
+A total of 2 subsystems have been described for the Dsr system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Dsr_I subsystem in the genome of *Escherichia coli* (GCF_016904235.1) is composed of 1 protein: Dsr1 (WP_204608492.1).
+The Dsr_I system in *Pseudohalocynthiibacter aestuariivivens* (GCF_011040495.1, NZ_CP049037) is composed of 1 protein: Dsr1 (WP_165194530.1)
-{max-width=750px}
+{max-width=750px}
-Dsr_II subsystem in the genome of *Escherichia coli* (GCF_009950125.1) is composed of 1 protein: Dsr2 (WP_178103017.1).
+The Dsr_II system in *Deinococcus deserti* (GCF_000020685.1, NC_012526) is composed of 1 protein: Dsr2 (WP_083764220.1)
## Distribution of the system among prokaryotes
-The Dsr system is present in a total of 246 different species.
+Among the 22,803 complete genomes of RefSeq, the Dsr is detected in 246 genomes (1.08 %).
-Among the 22k complete genomes of RefSeq, this system is present in 641 genomes (2.8 %).
+The system was detected in 162 different species.
{max-width=750px}
-*Proportion of genome encoding the Dsr system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Dsr system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/eleos.md b/content/3.defense-systems/eleos.md
index fab1f736c6c4448ebc873bfb38fc6c71e9b69575..ebd6dde80091004b02bf92c55f6a2cd01e561a06 100644
--- a/content/3.defense-systems/eleos.md
+++ b/content/3.defense-systems/eleos.md
@@ -16,23 +16,25 @@ tableColumns:
The Eleos system was previously described as the Dynamins-like system in (Millman et al, 2022).
## Example of genomic structure
-The Eleos system is composed of 2 proteins: LeoA and, LeoBC. Sometimes, the systems is in three genes: LeoA, LeoB and LeoC.
-Here is an example found in the RefSeq database:
+The Eleos is composed of 4 proteins: LeoA, LeoBC, LeoB and LeoC.
+
+Here is an example found in the RefSeq database:
{max-width=750px}
-Dynamins system in the genome of *Pseudomonas aeruginosa* (GCF_002223805.1) is composed of 2 proteins: LeoBC (WP_024947442.1)and, LeoA (WP_024947443.1).
+The Eleos system in *Synechococcus sp. CBW1002* (GCF_015840915.1, NZ_CP060398) is composed of 2 proteins LeoBC (WP_197170386.1) LeoA (WP_197170387.1)
## Distribution of the system among prokaryotes
-The Eleos system is present in a total of 807 different species.
+Among the 22,803 complete genomes of RefSeq, the Eleos is detected in 414 genomes (1.82 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2652 genomes (11.6 %).
+The system was detected in 223 different species.
{max-width=750px}
-*Proportion of genome encoding the Eleos system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Eleos system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/fs_giy_yig.md b/content/3.defense-systems/fs_giy_yig.md
index 91987d8b5c8f31ebf21b6699617b0b7bec0e6291..7a8084b660a75fb1926719609f08e110109fac0f 100644
--- a/content/3.defense-systems/fs_giy_yig.md
+++ b/content/3.defense-systems/fs_giy_yig.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The FS_GIY_YIG is composed of 1 protein: GIY_YIG.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The FS_GIY_YIG system in *Klebsiella pneumoniae* (GCF_021389995.1, NZ_CP089989) is composed of 1 protein: GIY_YIG (WP_053067640.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the FS_GIY_YIG is detected in 159 genomes (0.7 %).
+
+The system was detected in 87 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the FS_GIY_YIG system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### FS_GIY_YIG
diff --git a/content/3.defense-systems/fs_hp.md b/content/3.defense-systems/fs_hp.md
index 98a3aa0ae5b87cbfad24aef06e3174c47db9988c..34e1a5b53ab0552d143758e7bcb96a293e7213aa 100644
--- a/content/3.defense-systems/fs_hp.md
+++ b/content/3.defense-systems/fs_hp.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The FS_HP is composed of 1 protein: HP.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The FS_HP system in *Escherichia coli* (GCF_016944735.1, NZ_CP063511) is composed of 1 protein: HP (WP_227456581.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the FS_HP is detected in 93 genomes (0.41 %).
+
+The system was detected in 29 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the FS_HP system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### FS_HP
diff --git a/content/3.defense-systems/fs_hp_sdh_sah.md b/content/3.defense-systems/fs_hp_sdh_sah.md
index e4bd179032dc677fecb8c59e61d7ac4b0a092ebc..335c2cddafbdb147d99a20030d4b06404de41f72 100644
--- a/content/3.defense-systems/fs_hp_sdh_sah.md
+++ b/content/3.defense-systems/fs_hp_sdh_sah.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The FS_HP_SDH_sah is composed of 2 proteins: HP and SDH_sah.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The FS_HP_SDH_sah system in *Escherichia coli* (GCF_904831805.1, NZ_LR882990) is composed of 2 proteins HP (WP_133302715.1) SDH_sah (WP_032201440.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the FS_HP_SDH_sah is detected in 6 genomes (0.03 %).
+
+The system was detected in 3 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the FS_HP_SDH_sah system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### FS_HP_SDH_sah
diff --git a/content/3.defense-systems/fs_hsdr_like.md b/content/3.defense-systems/fs_hsdr_like.md
index 48fea2a44735605523a0dbf09689467505c3ce8a..0da466dd98fdc2fdf6bfd44a1cda572ec6a9d99a 100644
--- a/content/3.defense-systems/fs_hsdr_like.md
+++ b/content/3.defense-systems/fs_hsdr_like.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The FS_HsdR_like is composed of 3 proteins: HdrR, DUF6731 and HP.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The FS_HsdR_like system in *Klebsiella pneumoniae* (GCF_009661415.2, NZ_CP062997) is composed of 3 proteins DUF6731 (WP_048981062.1) HP (WP_048981064.1) HdrR (WP_153928365.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the FS_HsdR_like is detected in 39 genomes (0.17 %).
+
+The system was detected in 15 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the FS_HsdR_like system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### FS_HsdR_like
diff --git a/content/3.defense-systems/fs_sma.md b/content/3.defense-systems/fs_sma.md
index a5b0c0297b7bd99b55b744cb595ed95838ead071..037cf211cda99af1385c0e5d203af7cf67e24c82 100644
--- a/content/3.defense-systems/fs_sma.md
+++ b/content/3.defense-systems/fs_sma.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The FS_Sma is composed of 1 protein: Sma.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The FS_Sma system in *Staphylococcus aureus* (GCF_022869625.1, NZ_CP064365) is composed of 1 protein: Sma (WP_000041883.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the FS_Sma is detected in 578 genomes (2.53 %).
+
+The system was detected in 20 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the FS_Sma system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### FS_Sma
diff --git a/content/3.defense-systems/gabija.md b/content/3.defense-systems/gabija.md
index 88e5f388fc06598dab85233312ace554601b7727..65b3b8ab21fc68c27ce89f402ceab77cfc45c167 100644
--- a/content/3.defense-systems/gabija.md
+++ b/content/3.defense-systems/gabija.md
@@ -35,23 +35,24 @@ Therefore, both proteins would be cooperating to achieve both nucleotide depleti
## Example of genomic structure
-The Gabija system is composed of 2 proteins: GajA and, GajB_2.
+The Gabija is composed of 2 proteins: GajA and GajB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gabija system in the genome of *Vibrio parahaemolyticus* (GCF_009883895.1) is composed of 2 proteins: GajA (WP_085576823.1)and, GajB_1 (WP_031856308.1).
+The Gabija system in *Roseomonas fluvialis* (GCF_022846615.1, NZ_AP025637) is composed of 2 proteins GajA (WP_244458879.1) GajB_2 (WP_244458880.1)
## Distribution of the system among prokaryotes
-The Gabija system is present in a total of 1200 different species.
+Among the 22,803 complete genomes of RefSeq, the Gabija is detected in 2999 genomes (13.15 %).
-Among the 22k complete genomes of RefSeq, this system is present in 3762 genomes (16.5 %).
+The system was detected in 1375 different species.
{max-width=750px}
-*Proportion of genome encoding the Gabija system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gabija system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_ape.md b/content/3.defense-systems/gao_ape.md
index 38f502cd938f1bb47bc57117f7d3da9c8046b993..dc6272e73ae2c2fcc9cee6b36c2fc5c5e1c9e37f 100644
--- a/content/3.defense-systems/gao_ape.md
+++ b/content/3.defense-systems/gao_ape.md
@@ -14,23 +14,24 @@ tableColumns:
# Gao_Ape
## Example of genomic structure
-The Gao_Ape system is composed of one protein: ApeA.
+The Gao_Ape is composed of 1 protein: ApeA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Ape system in the genome of *Klebsiella sp.* (GCF_018388785.1) is composed of 1 protein: ApeA (WP_213292831.1).
+The Gao_Ape system in *Enterobacter mori* (GCF_018638795.1, NZ_CP071064) is composed of 1 protein: ApeA (WP_215231222.1)
## Distribution of the system among prokaryotes
-The Gao_Ape system is present in a total of 76 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Ape is detected in 76 genomes (0.33 %).
-Among the 22k complete genomes of RefSeq, this system is present in 199 genomes (0.9 %).
+The system was detected in 45 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Ape system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Ape system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_her.md b/content/3.defense-systems/gao_her.md
index b1909eafd342fc8e1ff6283c4873bf168f1c866a..e3f668fb8ac7d8ba17cadff61c1365504b6ebb53 100644
--- a/content/3.defense-systems/gao_her.md
+++ b/content/3.defense-systems/gao_her.md
@@ -15,27 +15,28 @@ tableColumns:
# Gao_Her
## Example of genomic structure
-The Gao_Her system have been describe in a total of 2 subsystems.
+A total of 2 subsystems have been described for the Gao_Her system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Gao_Her_DUF subsystem in the genome of *Enterobacter roggenkampii* (GCF_014524505.1) is composed of 2 proteins: DUF4297 (WP_188074283.1)and, HerA_DUF (WP_063614829.1).
+The Gao_Her_DUF system in *Escherichia coli* (GCF_023657935.1, NZ_CP098183) is composed of 2 proteins DUF4297 (WP_064484828.1) HerA_DUF (WP_064484829.1)
-{max-width=750px}
+{max-width=750px}
-Gao_Her_SIR subsystem in the genome of *Escherichia coli* (GCF_012221565.1) is composed of 2 proteins: SIR2 (WP_167839366.1)and, HerA_SIR2 (WP_021577682.1).
+The Gao_Her_SIR system in *Xanthomonas citri* (GCF_018831325.1, NZ_CP029270) is composed of 2 proteins SIR2 (WP_046831681.1) HerA_SIR2 (WP_046831680.1)
## Distribution of the system among prokaryotes
-The Gao_Her system is present in a total of 127 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Her is detected in 231 genomes (1.01 %).
-Among the 22k complete genomes of RefSeq, this system is present in 233 genomes (1.0 %).
+The system was detected in 134 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Her system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Gao_Her system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_hhe.md b/content/3.defense-systems/gao_hhe.md
index ee1822f24a3bf851788d42ddd5e35db07faf0f51..e39c90a5c35bd5d565dbafc5432128b5d316f428 100644
--- a/content/3.defense-systems/gao_hhe.md
+++ b/content/3.defense-systems/gao_hhe.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Gao_Hhe system is composed of one protein: HheA.
+The Gao_Hhe is composed of 1 protein: HheA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Hhe system in the genome of *Klebsiella pneumoniae* (GCF_011742415.2) is composed of 1 protein: HheA (WP_021314612.1).
+The Gao_Hhe system in *Thioalkalivibrio paradoxus* (GCF_000227685.2, NZ_CP007029) is composed of 1 protein: HheA (WP_006745815.1)
## Distribution of the system among prokaryotes
-The Gao_Hhe system is present in a total of 49 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Hhe is detected in 276 genomes (1.21 %).
-Among the 22k complete genomes of RefSeq, this system is present in 279 genomes (1.2 %).
+The system was detected in 56 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Hhe system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Hhe system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_iet.md b/content/3.defense-systems/gao_iet.md
index 9c749adfe423f5bcc16a6f5e1d01b85f285df3b1..92f0e5cfb8613aa2c2e0f9999ce973f00c498fd9 100644
--- a/content/3.defense-systems/gao_iet.md
+++ b/content/3.defense-systems/gao_iet.md
@@ -15,23 +15,24 @@ tableColumns:
# Gao_Iet
## Example of genomic structure
-The Gao_Iet system is composed of 2 proteins: IetS and, IetA.
+The Gao_Iet is composed of 2 proteins: IetA and IetS.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Iet system in the genome of *Escherichia coli* (GCF_014169855.1) is composed of 2 proteins: IetS (WP_001551050.1)and, IetA (WP_000385105.1).
+The Gao_Iet system in *Salmonella sp. SJTUF14076* (GCF_015534835.1, NZ_CP064674) is composed of 2 proteins IetA (WP_023226994.1) IetS (WP_024148175.1)
## Distribution of the system among prokaryotes
-The Gao_Iet system is present in a total of 189 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Iet is detected in 389 genomes (1.71 %).
-Among the 22k complete genomes of RefSeq, this system is present in 436 genomes (1.9 %).
+The system was detected in 185 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Iet system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Iet system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_mza.md b/content/3.defense-systems/gao_mza.md
index 1a41eb4c16fdd676c811ab91db48eb77c876f133..eef4cf639415a047e895ef6522630eb20c25b1c6 100644
--- a/content/3.defense-systems/gao_mza.md
+++ b/content/3.defense-systems/gao_mza.md
@@ -15,23 +15,24 @@ tableColumns:
# Gao_Mza
## Example of genomic structure
-The Gao_Mza system is composed of 5 proteins: MzaB, MzaC, MzaA, MzaD and, MzaE.
+The Gao_Mza is composed of 5 proteins: MzaA, MzaB, MzaC, MzaD and MzaE.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Mza system in the genome of *Enterobacter roggenkampii* (GCF_023023065.1) is composed of 5 proteins: MzaE (WP_045418899.1), MzaD (WP_045418897.1), MzaC (WP_025912266.1), MzaB (WP_045418895.1)and, MzaA (WP_045418893.1).
+The Gao_Mza system in *Massilia sp. Se16.2.3* (GCF_014171595.1, NZ_CP050451) is composed of 6 proteins MzaA (WP_182990577.1) MzaB (WP_229425381.1) MzaC (WP_182990578.1) MzaD (WP_182990579.1) MzaE (WP_182990580.1) MzaE (WP_182990581.1)
## Distribution of the system among prokaryotes
-The Gao_Mza system is present in a total of 57 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Mza is detected in 68 genomes (0.3 %).
-Among the 22k complete genomes of RefSeq, this system is present in 99 genomes (0.4 %).
+The system was detected in 32 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Mza system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Mza system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_ppl.md b/content/3.defense-systems/gao_ppl.md
index bcc350b98d643e160da8a81bf5123cbce3ec01d9..036156d0503de82bb793c2d5c68fa9d05ac94fcd 100644
--- a/content/3.defense-systems/gao_ppl.md
+++ b/content/3.defense-systems/gao_ppl.md
@@ -14,23 +14,24 @@ tableColumns:
# Gao_Ppl
## Example of genomic structure
-The Gao_Ppl system is composed of one protein: PplA.
+The Gao_Ppl is composed of 1 protein: PplA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Ppl system in the genome of *Klebsiella pneumoniae* (GCF_002787755.1) is composed of 1 protein: PplA (WP_015059139.1).
+The Gao_Ppl system in *Enterobacter sp. E76* (GCF_008931465.1, NZ_CP042499) is composed of 1 protein: PplA (WP_032676599.1)
## Distribution of the system among prokaryotes
-The Gao_Ppl system is present in a total of 106 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Ppl is detected in 276 genomes (1.21 %).
-Among the 22k complete genomes of RefSeq, this system is present in 364 genomes (1.6 %).
+The system was detected in 104 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Ppl system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Ppl system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_qat.md b/content/3.defense-systems/gao_qat.md
index 80833dfa42e64236750979407cf437fab7d879f7..9c3da94fa8d5fea677547cca683f35acd58a71dc 100644
--- a/content/3.defense-systems/gao_qat.md
+++ b/content/3.defense-systems/gao_qat.md
@@ -15,23 +15,24 @@ tableColumns:
# Gao_Qat
## Example of genomic structure
-The Gao_Qat system is composed of 4 proteins: QatA, QatB, QatC and, QatD.
+The Gao_Qat is composed of 4 proteins: QatA, QatB, QatC and QatD.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Qat system in the genome of *Raoultella ornithinolytica* (GCF_002214825.1) is composed of 4 proteins: QatA (WP_088883811.1), QatB (WP_127146083.1), QatC (WP_088883813.1)and, QatD (WP_088883814.1).
+The Gao_Qat system in *Ralstonia wenshanensis* (GCF_021173085.1, NZ_CP076413) is composed of 4 proteins QatA (WP_232041545.1) QatB (WP_232041546.1) QatC (WP_232041547.1) QatD (WP_232043074.1)
## Distribution of the system among prokaryotes
-The Gao_Qat system is present in a total of 246 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Qat is detected in 621 genomes (2.72 %).
-Among the 22k complete genomes of RefSeq, this system is present in 645 genomes (2.8 %).
+The system was detected in 267 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Qat system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Qat system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_rl.md b/content/3.defense-systems/gao_rl.md
index 435b5c39c98b7971a1512e2876287214d1fb1856..06631e1bbaca644e5425a10acae3088f4a2305ca 100644
--- a/content/3.defense-systems/gao_rl.md
+++ b/content/3.defense-systems/gao_rl.md
@@ -28,23 +28,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Gao_RL system is composed of 4 proteins: RL_D, RL_C, RL_B and, RL_A.
+The Gao_RL is composed of 4 proteins: RL_A, RL_B, RL_C and RL_D.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_RL system in the genome of *Morganella morganii* (GCF_020790175.1) is composed of 4 proteins: RL_D (WP_064483389.1), RL_C (WP_064483388.1), RL_B (WP_064483387.1)and, RL_A (WP_064483386.1).
+The Gao_RL system in *Methylocystis heyeri* (GCF_004802635.2, NZ_CP046053) is composed of 4 proteins RL_A (WP_136498122.1) RL_B (WP_136498123.1) RL_C (WP_154331773.1) RL_D (WP_136498124.1)
## Distribution of the system among prokaryotes
-The Gao_RL system is present in a total of 77 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_RL is detected in 131 genomes (0.57 %).
-Among the 22k complete genomes of RefSeq, this system is present in 133 genomes (0.6 %).
+The system was detected in 74 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_RL system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_RL system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_tery.md b/content/3.defense-systems/gao_tery.md
index e82990dcbe9728cd8eaef88fc807a260cd2a893c..42bf18b177ffff35836be9dcf51cf732b770329b 100644
--- a/content/3.defense-systems/gao_tery.md
+++ b/content/3.defense-systems/gao_tery.md
@@ -14,23 +14,24 @@ tableColumns:
# Gao_TerY
## Example of genomic structure
-The Gao_TerY system is composed of 3 proteins: TerYC, TerYB and, TerYA.
+The Gao_TerY is composed of 3 proteins: TerYA, TerYB and TerYC.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_TerY system in the genome of *Burkholderia contaminans* (GCF_018223785.1) is composed of 3 proteins: TerYA (WP_039364687.1), TerYB (WP_039364686.1)and, TerYC (WP_039364684.1).
+The Gao_TerY system in *Arachidicoccus terrestris* (GCF_020042345.1, NZ_CP083387) is composed of 3 proteins TerYA (WP_224070248.1) TerYB (WP_224070249.1) TerYC (WP_224070250.1)
## Distribution of the system among prokaryotes
-The Gao_TerY system is present in a total of 69 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_TerY is detected in 126 genomes (0.55 %).
-Among the 22k complete genomes of RefSeq, this system is present in 126 genomes (0.6 %).
+The system was detected in 74 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_TerY system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_TerY system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_tmn.md b/content/3.defense-systems/gao_tmn.md
index 16ae4736c5dddccddbe1e33e635f572d7af1c4c5..c7511731b11b6df8b5008f64ed79f2a66feaebd0 100644
--- a/content/3.defense-systems/gao_tmn.md
+++ b/content/3.defense-systems/gao_tmn.md
@@ -27,23 +27,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Gao_Tmn system is composed of one protein: TmnA.
+The Gao_Tmn is composed of 1 protein: TmnA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Tmn system in the genome of *Salmonella enterica* (GCF_006384195.1) is composed of 1 protein: TmnA (WP_130525902.1).
+The Gao_Tmn system in *Pectobacterium carotovorum* (GCF_009931215.1, NZ_CP034237) is composed of 1 protein: TmnA (WP_161509209.1)
## Distribution of the system among prokaryotes
-The Gao_Tmn system is present in a total of 82 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Tmn is detected in 394 genomes (1.73 %).
-Among the 22k complete genomes of RefSeq, this system is present in 414 genomes (1.8 %).
+The system was detected in 84 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Tmn system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Tmn system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gao_upx.md b/content/3.defense-systems/gao_upx.md
index 6ed915fe68ded4bb9a8ed1b3a6db7c698dbf4124..9bdf3daaa92f37433665883b633121130967f095 100644
--- a/content/3.defense-systems/gao_upx.md
+++ b/content/3.defense-systems/gao_upx.md
@@ -22,23 +22,24 @@ The Gao_upx system is composed by a single protein. It was predicted through a g
As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Gao_Upx system is composed of one protein: UpxA.
+The Gao_Upx is composed of 1 protein: UpxA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Gao_Upx system in the genome of *Salmonella sp.* (GCF_020268625.1) is composed of 1 protein: UpxA (WP_060647174.1).
+The Gao_Upx system in *Serratia sp. JSRIV001* (GCF_019968745.1, NZ_CP074147) is composed of 1 protein: UpxA (WP_223499068.1)
## Distribution of the system among prokaryotes
-The Gao_Upx system is present in a total of 31 different species.
+Among the 22,803 complete genomes of RefSeq, the Gao_Upx is detected in 39 genomes (0.17 %).
-Among the 22k complete genomes of RefSeq, this system is present in 39 genomes (0.2 %).
+The system was detected in 33 different species.
{max-width=750px}
-*Proportion of genome encoding the Gao_Upx system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Gao_Upx system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/gaps1.md b/content/3.defense-systems/gaps1.md
index 32bbf8720c63b094fe67986235f44c0423a11b99..d8e61a14fb673cf7bc16930ea38a6f225cfdd8a8 100644
--- a/content/3.defense-systems/gaps1.md
+++ b/content/3.defense-systems/gaps1.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The GAPS1 is composed of 1 protein: GAPS1.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The GAPS1 system in *Hydrogenophaga sp. BPS33* (GCF_009859475.1, NZ_CP044549) is composed of 1 protein: GAPS1 (WP_159591124.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the GAPS1 is detected in 434 genomes (1.9 %).
+
+The system was detected in 56 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the GAPS1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### GAPS1
diff --git a/content/3.defense-systems/gaps2.md b/content/3.defense-systems/gaps2.md
index 63084664fe2e2a689ad8ff2f9776f98c4fb71611..8eb3e73cbbaeaff2df4cf9b98b23a2c242047da9 100644
--- a/content/3.defense-systems/gaps2.md
+++ b/content/3.defense-systems/gaps2.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The GAPS2 is composed of 1 protein: GAPS2.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The GAPS2 system in *Mannheimia sp. USDA-ARS-USMARC-1261* (GCF_000521605.1, NZ_CP006942) is composed of 1 protein: GAPS2 (WP_025236539.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the GAPS2 is detected in 725 genomes (3.18 %).
+
+The system was detected in 208 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the GAPS2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### GAPS2
diff --git a/content/3.defense-systems/gaps4.md b/content/3.defense-systems/gaps4.md
index fa50666d990af428c2d9328cf71ebf9266fce962..a926ef527ba8f2fc886a22ee0810baa5b3701de3 100644
--- a/content/3.defense-systems/gaps4.md
+++ b/content/3.defense-systems/gaps4.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The GAPS4 is composed of 2 proteins: GAPS4a and GAPS4b.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The GAPS4 system in *Hafnia alvei* (GCF_902387815.1, NZ_LR699008) is composed of 2 proteins GAPS4a (WP_111329122.1) GAPS4b (WP_111329123.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the GAPS4 is detected in 118 genomes (0.52 %).
+
+The system was detected in 74 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the GAPS4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### GAPS4
diff --git a/content/3.defense-systems/gaps6.md b/content/3.defense-systems/gaps6.md
index 59a008cfd10142d1bb40fd68c81e683cdce3d20b..2a8e424130e828dfef31448ed6a200f84cc52ee1 100644
--- a/content/3.defense-systems/gaps6.md
+++ b/content/3.defense-systems/gaps6.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The GAPS6 is composed of 2 proteins: GAPS6a and GAPS6b.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The GAPS6 system in *Escherichia coli* (GCF_013372365.1, NZ_CP054227) is composed of 2 proteins GAPS6b (WP_096985931.1) GAPS6a (WP_000346990.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the GAPS6 is detected in 50 genomes (0.22 %).
+
+The system was detected in 33 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the GAPS6 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### GAPS6
diff --git a/content/3.defense-systems/gasdermin.md b/content/3.defense-systems/gasdermin.md
index e2eb4fc99e384c62e3182be94d6776b1fe7d0deb..13302581c2bee8ca9e889a6bb37c8af363ad3be6 100644
--- a/content/3.defense-systems/gasdermin.md
+++ b/content/3.defense-systems/gasdermin.md
@@ -29,23 +29,24 @@ Akin to their human counterparts, bacterial gasdermins encode a C-terminal inhib
## Example of genomic structure
-The GasderMIN system is composed of one protein: bGSDM.
+The GasderMIN is composed of 1 protein: bGSDM.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-GasderMIN system in the genome of *Rhodoplanes sp.* (GCF_001579845.1) is composed of 1 protein: bGSDM (WP_068019379.1).
+The GasderMIN system in *Flavobacterium johnsoniae* (GCF_000016645.1, NC_009441) is composed of 1 protein: bGSDM (WP_012023900.1)
## Distribution of the system among prokaryotes
-The GasderMIN system is present in a total of 25 different species.
+Among the 22,803 complete genomes of RefSeq, the GasderMIN is detected in 27 genomes (0.12 %).
-Among the 22k complete genomes of RefSeq, this system is present in 29 genomes (0.1 %).
+The system was detected in 26 different species.
{max-width=750px}
-*Proportion of genome encoding the GasderMIN system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the GasderMIN system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/hachiman.md b/content/3.defense-systems/hachiman.md
index 61e578409f7c91d83396c6fed07d49e4d3c7c8b1..4d52aee37f49295e02b01de533297f44f08c209e 100644
--- a/content/3.defense-systems/hachiman.md
+++ b/content/3.defense-systems/hachiman.md
@@ -21,23 +21,24 @@ More recently, Hachiman Type 2 systems were discovered and appeared to include a
## Example of genomic structure
-The Hachiman type I system is composed of 2 proteins: HamB and, HamA.
+The Hachiman is composed of 2 proteins: HamA and HamB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Hachiman system in the genome of *Mesorhizobium terrae* (GCF_008727715.1) is composed of 2 proteins: HamA_1 (WP_245317480.1)and, HamB (WP_065997554.1).
+The Hachiman system in *Vibrio metschnikovii* (GCF_009763925.1, NZ_CP046822) is composed of 2 proteins HamA_1 (WP_158137983.1) HamB (WP_158137986.1)
## Distribution of the system among prokaryotes
-The Hachiman system is present in a total of 518 different species.
+Among the 22,803 complete genomes of RefSeq, the Hachiman is detected in 1256 genomes (5.51 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1361 genomes (6.0 %).
+The system was detected in 541 different species.
{max-width=750px}
-*Proportion of genome encoding the Hachiman system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Hachiman system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/hna.md b/content/3.defense-systems/hna.md
index 7996c39df26877f77ff7fb54205daa251003c25c..82d73c2d23255f35eb49be021fd63421ec9b774a 100644
--- a/content/3.defense-systems/hna.md
+++ b/content/3.defense-systems/hna.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The Hna is composed of 1 protein: Hna.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The Hna system in *Aggregatimonas sangjinii* (GCF_005943945.1, NZ_CP040710) is composed of 1 protein: Hna (WP_138852947.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the Hna is detected in 493 genomes (2.16 %).
+
+The system was detected in 305 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the Hna system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### Hna
diff --git a/content/3.defense-systems/isg15-like.md b/content/3.defense-systems/isg15-like.md
index 294a5c2226ea241a1a847579268163979d55fa06..7b71a70c7d73f7142c20bdd054bdce868339e369 100644
--- a/content/3.defense-systems/isg15-like.md
+++ b/content/3.defense-systems/isg15-like.md
@@ -14,23 +14,24 @@ tableColumns:
# ISG15-like
## Example of genomic structure
-The ISG15-like system is composed of 4 proteins: BilD, BilC, BilB and, BilA.
+The ISG15-like is composed of 4 proteins: BilA, BilB, BilC and BilD.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-ISG15-like system in the genome of *Rhizobium phaseoli* (GCF_001664285.1) is composed of 4 proteins: BilA (WP_064823699.1), BilB (WP_150124924.1), BilC (WP_150124925.1)and, BilD (WP_190304495.1).
+The ISG15-like system in *Caulobacter segnis* (GCF_023935105.1, NZ_CP096040) is composed of 4 proteins BilA (WP_252632187.1) BilB (WP_252632188.1) BilC (WP_252632189.1) BilD (WP_252632190.1)
## Distribution of the system among prokaryotes
-The ISG15-like system is present in a total of 28 different species.
+Among the 22,803 complete genomes of RefSeq, the ISG15-like is detected in 43 genomes (0.19 %).
-Among the 22k complete genomes of RefSeq, this system is present in 43 genomes (0.2 %).
+The system was detected in 39 different species.
{max-width=750px}
-*Proportion of genome encoding the ISG15-like system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the ISG15-like system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/jukab.md b/content/3.defense-systems/jukab.md
index 93e66c069fe58d5d6fe9166ebfb46aa728fc66a1..54409b2137bdfcd56e1b58aacaa955f21238024b 100644
--- a/content/3.defense-systems/jukab.md
+++ b/content/3.defense-systems/jukab.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The JukAB is composed of 2 proteins: JukA and JukB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The JukAB system in *Kosakonia oryzae* (GCF_020544365.1, NZ_CP065358) is composed of 2 proteins JukA (WP_064562651.1) JukB (WP_064562654.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the JukAB is detected in 133 genomes (0.58 %).
+
+The system was detected in 50 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the JukAB system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### JukAB
diff --git a/content/3.defense-systems/kiwa.md b/content/3.defense-systems/kiwa.md
index 1d94d0369e1986e7b805d99c5cd8071dc182f3aa..7e83855f46d24981711f7f5f1ad80a40ade38eee 100644
--- a/content/3.defense-systems/kiwa.md
+++ b/content/3.defense-systems/kiwa.md
@@ -28,23 +28,24 @@ KwaA detects phage infection by detecting the inhibition of the host RNA polymer
## Example of genomic structure
-The Kiwa system is composed of 2 proteins: KwaA and, KwaB.
+The Kiwa is composed of 2 proteins: KwaA and KwaB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Kiwa system in the genome of *Aggregatibacter actinomycetemcomitans* (GCF_001690155.1) is composed of 2 proteins: KwaB (WP_005553122.1)and, KwaA (WP_005540311.1).
+The Kiwa system in *Dickeya zeae* (GCF_019464635.1, NZ_CP040817) is composed of 2 proteins KwaA (WP_038908257.1) KwaB_2 (WP_192991081.1)
## Distribution of the system among prokaryotes
-The Kiwa system is present in a total of 355 different species.
+Among the 22,803 complete genomes of RefSeq, the Kiwa is detected in 1095 genomes (4.8 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1104 genomes (4.8 %).
+The system was detected in 382 different species.
{max-width=750px}
-*Proportion of genome encoding the Kiwa system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Kiwa system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/lamassu-fam.md b/content/3.defense-systems/lamassu-fam.md
index de297dd367b1f55c8b5d7cc8a68f4f799d076dbd..cadf37d464206fd054fa6307154d5269702079ac 100644
--- a/content/3.defense-systems/lamassu-fam.md
+++ b/content/3.defense-systems/lamassu-fam.md
@@ -28,63 +28,62 @@ Lamassu systems function through abortive infection (Abi), but their molecular m
## Example of genomic structure
The majority of the Lamassu-Fam systems are composed of 3 proteins: LmuA, LmuB and, an accessory LmuC proteins.
+LmuA is the effector and encode for different domains depending on the subsystem.
-Here is an example of a Lamassu-Fam_Cap4_nuclease found in the RefSeq database:
+A total of 11 subsystems have been described for the Lamassu-Fam system.
-{max-width=750px}
+Here is some examples found in the RefSeq database:
-Lamassu-Fam_Cap4_nuclease subsystem in the genome of *Pseudomonas sp.* (GCF_016925675.1) is composed of 3 proteins: LmuB_SMC_Hydrolase_protease (WP_205519025.1), LmuC_acc_Cap4_nuclease (WP_205478326.1)and, LmuA_effector_Cap4_nuclease_II (WP_205478325.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-Amidase system in *Variovorax sp. PBL-H6* (GCF_901827155.1, NZ_LR594659) is composed of 2 proteins LmuA_effector_Amidase (WP_162575880.1) LmuB_SMC_Amidase (WP_162575881.1)
-Lamassu-Fam_Mrr subsystem in the genome of *Escherichia coli* (GCF_011404895.1) is composed of 2 proteins: LmuA_effector_Mrr (WP_044864610.1)and, LmuB_SMC_Cap4_nuclease_II (WP_226199836.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-Cap4_nuclease system in *Opitutus terrae* (GCF_000019965.1, NC_010571) is composed of 3 proteins LmuA_effector_Cap4_nuclease_II (WP_012377261.1) LmuC_acc_Lipase (WP_012377262.1) LmuB_SMC_Lipase (WP_012377263.1)
-Lamassu-Fam_Hydrolase subsystem in the genome of *Caldisphaera lagunensis* (GCF_000317795.1) is composed of 2 proteins: LmuA_effector_Hydrolase (WP_015232255.1)and, LmuB_SMC_Hydrolase_protease (WP_015232260.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-FMO system in *Mesorhizobium sp. B2-1-8* (GCF_006442545.2, NZ_CP083952) is composed of 3 proteins LmuA_effector_FMO (WP_181178269.1) LmuC_acc_FMO (WP_140755520.1) LmuB_SMC_FMO (WP_181178271.1)
-Lamassu-Fam_Lipase subsystem in the genome of *Bradyrhizobium elkanii* (GCF_012871055.1) is composed of 2 proteins: LmuA_effector_Lipase (WP_172647146.1)and, LmuB_SMC_Lipase (WP_172647148.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-Hydrolase_Protease system in *Deefgea piscis* (GCF_013284055.1, NZ_CP054143) is composed of 4 proteins LmuA_effector_Hydrolase (WP_173533336.1) LmuA_effector_Protease (WP_173533337.1) LmuC_acc_hydrolase_protease (WP_173533338.1) LmuB_SMC_Hydrolase_protease (WP_173533339.1)
-Lamassu-Fam_Hydrolase_protease subsystem in the genome of *Klebsiella pneumoniae* (GCF_022453565.1) is composed of 3 proteins: LmuB_SMC_Cap4_nuclease_II (WP_023301569.1), LmuA_effector_Protease (WP_023301563.1)and, LmuA_effector_Hydrolase (WP_023301562.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-Hypothetical system in *Dehalococcoides mccartyi* (GCF_002007905.1, NZ_CP019866) is composed of 3 proteins LmuA_effector_hypothetical (WP_077975422.1) LmuC_acc_hypothetical (WP_077975423.1) LmuB_SMC_hypothetical (WP_077975424.1)
-Lamassu-Fam_Hypothetical subsystem in the genome of *Streptococcus constellatus* (GCF_016127875.1) is composed of 2 proteins: LmuB_SMC_Cap4_nuclease_II (WP_198458038.1)and, LmuA_effector_hypothetical (WP_198458040.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-Lipase system in *Klebsiella michiganensis* (GCF_022869885.1, NZ_CP094999) is composed of 3 proteins LmuB_SMC_Lipase (WP_016157240.1) LmuC_acc_Lipase (WP_032931759.1) LmuA_effector_Lipase (WP_042945865.1)
-Lamassu-Fam_Protease subsystem in the genome of *Azospirillum brasilense* (GCF_022023855.1) is composed of 2 proteins: LmuA_effector_Protease (WP_237905456.1)and, LmuB_SMC_Cap4_nuclease_II (WP_237905457.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-Mrr system in *Agrobacterium tumefaciens* (GCF_022760295.1, NZ_CP092895) is composed of 3 proteins LmuA_effector_Mrr (WP_223215665.1) LmuC_acc_Mrr (WP_220318798.1) LmuB_SMC_Mrr (WP_220318797.1)
-Lamassu-Fam_PDDEXK subsystem in the genome of *Janthinobacterium sp.* (GCF_000013625.1) is composed of 2 proteins: LmuA_effector_PDDEXK (WP_012078862.1)and, LmuB_SMC_Cap4_nuclease_II (WP_012078864.1).
+{max-width=750px}
-{max-width=750px}
+The Lamassu-PDDEXK system in *Corynebacterium pseudodiphtheriticum* (GCF_023509295.1, NZ_CP091864) is composed of 3 proteins LmuC_acc_PDDEXK (WP_249620350.1) LmuB_SMC_PDDEXK (WP_249620351.1) LmuA_effector_PDDEXK (WP_249620352.1)
-Lamassu-Fam_Sir2 subsystem in the genome of *Paenibacillus polymyxa* (GCF_022492955.1) is composed of 4 proteins: LmuB_SMC_Cap4_nuclease_II (WP_240753063.1), LmuB_SMC_Sir2 (WP_240753064.1), LmuC_acc_Sir2 (WP_240753066.1)and, LmuA_effector_Sir2 (WP_240753072.1).
+{max-width=750px}
+The Lamassu-Protease system in *Enterococcus hirae* (GCF_014218175.1, NZ_CP042289) is composed of 3 proteins LmuA_effector_Protease (WP_034866244.1) LmuC_acc_hydrolase_protease (WP_181916367.1) LmuB_SMC_Hydrolase_protease (WP_034866249.1)
-{max-width=750px}
+{max-width=750px}
-Lamassu-Fam_FMO subsystem in the genome of *Acinetobacter johnsonii* (GCF_021496365.1) is composed of 2 proteins: LmuA_effector_FMO (WP_234965678.1)and, LmuB_SMC_FMO (WP_234965680.1).
-
-{max-width=750px}
-
-Lamassu-Fam_Amidase subsystem in the genome of *Bradyrhizobium arachidis* (GCF_015291705.1) is composed of 2 proteins: LmuA_effector_Amidase (WP_143130692.1)and, LmuB_SMC_Amidase (WP_092217687.1).
+The Lamassu-Sir2 system in *Enterococcus faecalis* (GCF_023375525.1, NZ_CP091235) is composed of 3 proteins LmuA_effector_Sir2 (WP_231436660.1) LmuC_acc_Sir2 (WP_231436659.1) LmuB_SMC_Sir2 (WP_231436658.1)
## Distribution of the system among prokaryotes
-The Lamassu-Fam system is present in a total of 1189 different species.
+Among the 22,803 complete genomes of RefSeq, the Lamassu-Fam is detected in 2867 genomes (12.57 %).
+
+The system was detected in 1220 different species.
-Among the 22k complete genomes of RefSeq, this system is present in 3939 genomes (17.3 %).
+{max-width=750px}
-{max-width=750}
+Proportion of genome encoding the Lamassu-Fam system for the 14 phyla with more than 50 genomes in the RefSeq database.
-*Proportion of genome encoding the Lamassu-Fam system for the 14 phyla with more than 50 genomes in the RefSeq database.*
## Structure
diff --git a/content/3.defense-systems/lit.md b/content/3.defense-systems/lit.md
index e64c9beb952d6afb1098b56d99752a743477661b..58c86a7a989183b25b6aebd58b63acea08e5a9ea 100644
--- a/content/3.defense-systems/lit.md
+++ b/content/3.defense-systems/lit.md
@@ -15,23 +15,24 @@ tableColumns:
# Lit
## Example of genomic structure
-The Lit system is composed of one protein: Lit.
+The Lit is composed of 1 protein: Lit.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Lit system in the genome of *Stenotrophomonas maltophilia* (GCF_012647025.1) is composed of 1 protein: Lit (WP_061201506.1).
+The Lit system in *Klebsiella pneumoniae* (GCF_002180175.1, NZ_CP021686) is composed of 1 protein: Lit (WP_223861284.1)
## Distribution of the system among prokaryotes
-The Lit system is present in a total of 193 different species.
+Among the 22,803 complete genomes of RefSeq, the Lit is detected in 222 genomes (0.97 %).
-Among the 22k complete genomes of RefSeq, this system is present in 455 genomes (2.0 %).
+The system was detected in 78 different species.
{max-width=750px}
-*Proportion of genome encoding the Lit system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Lit system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/mads.md b/content/3.defense-systems/mads.md
index 48874bf7411e8c3e52fd3bd09955dfd8e04da4f4..c9ba94ff00a1a624aab4c0d1d705c274ea128a37 100644
--- a/content/3.defense-systems/mads.md
+++ b/content/3.defense-systems/mads.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The MADS is composed of 8 proteins: mad1, mad2, mad3, mad4, mad5, mad6, mad7 and mad8.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The MADS system in *Pseudomonas otitidis* (GCF_019879085.1, NZ_CP082244) is composed of 8 proteins mad1 (WP_058876992.1) mad2 (WP_208273447.1) mad3 (WP_208273444.1) mad4 (WP_208273442.1) mad5 (WP_208273440.1) mad6 (WP_208273438.1) mad7 (WP_208273430.1) mad8 (WP_233473447.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the MADS is detected in 72 genomes (0.32 %).
+
+The system was detected in 63 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the MADS system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### MADS
diff --git a/content/3.defense-systems/mazef.md b/content/3.defense-systems/mazef.md
index 40898500b0eba53f678ae704816901f540ba6805..7d5913befcc6c8b055c0e0ec9d38499d83558291 100644
--- a/content/3.defense-systems/mazef.md
+++ b/content/3.defense-systems/mazef.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The MazEF is composed of 2 proteins: MazE and MazF.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The MazEF system in *Pantoea vagans* (GCF_004792415.1, NZ_CP038853) is composed of 2 proteins MazE (WP_135910538.1) MazF (WP_135908176.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the MazEF is detected in 4457 genomes (19.55 %).
+
+The system was detected in 993 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the MazEF system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Experimental validation
<mermaid>
graph LR;
diff --git a/content/3.defense-systems/menshen.md b/content/3.defense-systems/menshen.md
index 8865a980f48922504d598a0f3e0476dd1f1c4413..536decd91221c5bcfb17fb9dd2b0501e6c8acced 100644
--- a/content/3.defense-systems/menshen.md
+++ b/content/3.defense-systems/menshen.md
@@ -28,23 +28,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Menshen system is composed of 3 proteins: NsnA, NsnB and, NsnC_2623244837.
+The Menshen is composed of 3 proteins: NsnA, NsnB and NsnC.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Menshen system in the genome of *Citrobacter freundii* (GCF_003937345.2) is composed of 3 proteins: NsnA (WP_125363058.1), NsnB (WP_197964486.1)and, NsnC_2617187710 (WP_125363056.1).
+The Menshen system in *Streptomyces marincola* (GCF_020410765.1, NZ_CP084541) is composed of 3 proteins NsnA (WP_226077564.1) NsnB (WP_226077566.1) NsnC_2507451963 (WP_226077568.1)
## Distribution of the system among prokaryotes
-The Menshen system is present in a total of 247 different species.
+Among the 22,803 complete genomes of RefSeq, the Menshen is detected in 430 genomes (1.89 %).
-Among the 22k complete genomes of RefSeq, this system is present in 446 genomes (2.0 %).
+The system was detected in 263 different species.
{max-width=750px}
-*Proportion of genome encoding the Menshen system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Menshen system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/mmb_gp29_gp30.md b/content/3.defense-systems/mmb_gp29_gp30.md
index bca819f0a147bf341d3459f2ab8699cd8c257ebf..fe3a9d9500be6cbbd71f32a9aab63abeea250d3d 100644
--- a/content/3.defense-systems/mmb_gp29_gp30.md
+++ b/content/3.defense-systems/mmb_gp29_gp30.md
@@ -12,6 +12,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The MMB_gp29_gp30 is composed of 2 proteins: gp29 and gp30.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The MMB_gp29_gp30 system in *Mycolicibacterium insubricum* (GCF_010731615.1, NZ_AP022618) is composed of 2 proteins gp29 (WP_234805905.1) gp30 (WP_083031848.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the MMB_gp29_gp30 is detected in 5 genomes (0.02 %).
+
+The system was detected in 4 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the MMB_gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### MMB_gp29_gp30
diff --git a/content/3.defense-systems/mok_hok_sok.md b/content/3.defense-systems/mok_hok_sok.md
index c4e67479c6e2397836d9bc7850892e88d409fb7c..17683a2176fa013dc98ca58a9d422805e82726b1 100644
--- a/content/3.defense-systems/mok_hok_sok.md
+++ b/content/3.defense-systems/mok_hok_sok.md
@@ -15,23 +15,24 @@ tableColumns:
# Mok_Hok_Sok
## Example of genomic structure
-The Mok_Hok_Sok system is composed of 2 proteins: Mok and, Hok.
+The Mok_Hok_Sok is composed of 2 proteins: Mok and Hok.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Mok_Hok_Sok system in the genome of *Raoultella terrigena* (GCF_015571975.1) is composed of 2 proteins: Hok (WP_227629320.1)and, Mok (WP_227699927.1).
+The Mok_Hok_Sok system in *Escherichia fergusonii* (GCF_013819565.1, NZ_CP057221) is composed of 1 protein: Hok (WP_096937776.1)
## Distribution of the system among prokaryotes
-The Mok_Hok_Sok system is present in a total of 57 different species.
+Among the 22,803 complete genomes of RefSeq, the Mok_Hok_Sok is detected in 1656 genomes (7.26 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1687 genomes (7.4 %).
+The system was detected in 83 different species.
{max-width=750px}
-*Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/mokosh.md b/content/3.defense-systems/mokosh.md
index 5509c215d320be6c19aac18323da8dfa1888fce7..15224c64e08a160b61c1ace2eb6108d81d100b4e 100644
--- a/content/3.defense-systems/mokosh.md
+++ b/content/3.defense-systems/mokosh.md
@@ -27,27 +27,44 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Mokosh system have been describe in a total of 2 subsystems.
+A total of 7 subsystems have been described for the Mokosh system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Mokosh_TypeI subsystem in the genome of *Vibrio alginolyticus* (GCF_022343125.1) is composed of 2 proteins: MkoB2 (WP_238970063.1)and, MkoA2 (WP_238970065.1).
+The Mokosh_TypeII system in *Massilia sp. NP310* (GCF_019443485.1, NZ_CP080379) is composed of 1 protein: MkoC (WP_184237977.1)
-{max-width=750px}
+{max-width=750px}
-Mokosh_TypeII subsystem in the genome of *Shigella flexneri* (GCF_022354205.1) is composed of 1 protein: MkoC (WP_000344091.1).
+The Mokosh_Type_I_A system in *Cupriavidus pauculus* (GCF_019931045.1, NZ_CP082863) is composed of 2 proteins MkoA_A (WP_170292610.1) MkoB_A (WP_150981546.1)
+
+{max-width=750px}
+
+The Mokosh_Type_I_B system in *Collimonas pratensis* (GCF_001584185.1, NZ_CP013234) is composed of 2 proteins MkoB_B (WP_061945389.1) MkoA_B (WP_061945390.1)
+
+{max-width=750px}
+
+The Mokosh_Type_I_C system in *Klebsiella sp. WP7-S18-CRE-02* (GCF_014169515.1, NZ_AP022189) is composed of 2 proteins MkoB_C (WP_227674162.1) MkoA_C (WP_227674163.1)
+
+{max-width=750px}
+
+The Mokosh_Type_I_D system in *Geomonas paludis* (GCF_023221575.1, NZ_CP096574) is composed of 2 proteins MkoA_D (WP_248647094.1) MkoB_D (WP_248647095.1)
+
+{max-width=750px}
+
+The Mokosh_Type_I_E system in *Planococcus faecalis* (GCF_002009235.1, NZ_CP019401) is composed of 2 proteins MkoA_E (WP_078080177.1) MkoB_E (WP_071154541.1)
## Distribution of the system among prokaryotes
-The Mokosh system is present in a total of 605 different species.
+Among the 22,803 complete genomes of RefSeq, the Mokosh is detected in 1607 genomes (7.05 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2540 genomes (11.1 %).
+The system was detected in 577 different species.
{max-width=750px}
-*Proportion of genome encoding the Mokosh system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Mokosh system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/mqsrac.md b/content/3.defense-systems/mqsrac.md
index 019869e87f5da7eae86036d51e9b72381cf7626a..1cc2a02000b787378022655fd4f946ded62a275b 100644
--- a/content/3.defense-systems/mqsrac.md
+++ b/content/3.defense-systems/mqsrac.md
@@ -25,23 +25,24 @@ As far as we are aware, the molecular mechanism of MqsRAC is unknown.
## Example of genomic structure
-The MqsRAC system is composed of 2 proteins: mqsR and, mqsC.
+The MqsRAC is composed of 2 proteins: mqsC and mqsR.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-MqsRAC system in the genome of *Escherichia coli* (GCF_900636115.1) is composed of 2 proteins: mqsR (WP_024222007.1)and, mqsC (WP_021568458.1).
+The MqsRAC system in *Shigella dysenteriae* (GCF_002949935.1, NZ_CP026827) is composed of 2 proteins mqsR (WP_024222007.1) mqsC (WP_157899945.1)
## Distribution of the system among prokaryotes
-The MqsRAC system is present in a total of 18 different species.
+Among the 22,803 complete genomes of RefSeq, the MqsRAC is detected in 26 genomes (0.11 %).
-Among the 22k complete genomes of RefSeq, this system is present in 26 genomes (0.1 %).
+The system was detected in 20 different species.
{max-width=750px}
-*Proportion of genome encoding the MqsRAC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the MqsRAC system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/nhi.md b/content/3.defense-systems/nhi.md
index 685b244930892f01c866f7870eb57a02e440e3a0..3c1dc2e5c7722507041bf90e8da75a4ae868a39e 100644
--- a/content/3.defense-systems/nhi.md
+++ b/content/3.defense-systems/nhi.md
@@ -29,23 +29,24 @@ Nhi contains two domains, a nuclease and a helicase domain that are both needed
## Example of genomic structure
-The Nhi system is composed of one protein: Nhi.
+The Nhi is composed of 1 protein: Nhi.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Nhi system in the genome of *Enterococcus avium* (GCF_003711125.1) is composed of 1 protein: Nhi (WP_148712513.1).
+The Nhi system in *Staphylococcus sp. MZ9* (GCF_018622975.1, NZ_CP076029) is composed of 1 protein: Nhi (WP_045177897.1)
## Distribution of the system among prokaryotes
-The Nhi system is present in a total of 56 different species.
+Among the 22,803 complete genomes of RefSeq, the Nhi is detected in 199 genomes (0.87 %).
-Among the 22k complete genomes of RefSeq, this system is present in 202 genomes (0.9 %).
+The system was detected in 61 different species.
{max-width=750px}
-*Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/nixi.md b/content/3.defense-systems/nixi.md
index 2ae6b2a3ca9467ed4af20de08a94f446c880b057..3f115bb76f8329b78a58ff12ebdceae294804168 100644
--- a/content/3.defense-systems/nixi.md
+++ b/content/3.defense-systems/nixi.md
@@ -24,23 +24,24 @@ The NixI endonuclease cleaves the ICP1 genome at the GNAANCTT motif :ref{doi=10.
## Example of genomic structure
-The NixI system is composed of 2 proteins: NixI and, Stix.
+The NixI is composed of 2 proteins: NixI and Stix.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-NixI system in the genome of *Vibrio cholerae* (GCF_009646135.1) is composed of 2 proteins: NixI (WP_001147214.1)and, Stix (WP_000628297.1).
+The NixI system in *Apilactobacillus kunkeei* (GCF_001314945.1, NZ_CP012920) is composed of 1 protein: NixI (WP_158520138.1)
## Distribution of the system among prokaryotes
-The NixI system is present in a total of 8 different species.
+Among the 22,803 complete genomes of RefSeq, the NixI is detected in 8 genomes (0.04 %).
-Among the 22k complete genomes of RefSeq, this system is present in 19 genomes (0.1 %).
+The system was detected in 5 different species.
{max-width=750px}
-*Proportion of genome encoding the NixI system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the NixI system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/nlr.md b/content/3.defense-systems/nlr.md
index ec0e51e0d030b7f3fa841c0ee649703bce3a777a..311bef418ea278a88dfe16aa42a9ac6f53b53e16 100644
--- a/content/3.defense-systems/nlr.md
+++ b/content/3.defense-systems/nlr.md
@@ -15,27 +15,28 @@ tableColumns:
# NLR
## Example of genomic structure
-The NLR system have been describe in a total of 2 subsystems.
+A total of 2 subsystems have been described for the NLR system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-NLR_like_bNACHT01 subsystem in the genome of *Pseudomonas psychrotolerans* (GCF_001913135.1) is composed of 1 protein: NLR_like_bNACHT01 (WP_074528296.1).
+The NLR_like_bNACHT01 system in *Colwellia sp. Arc7-D* (GCF_003061515.1, NZ_CP028924) is composed of 1 protein: NLR_like_bNACHT01 (WP_162533747.1)
-{max-width=750px}
+{max-width=750px}
-NLR_like_bNACHT09 subsystem in the genome of *Escherichia coli* (GCF_900636105.1) is composed of 1 protein: NLR_like_bNACHT09 (WP_089572057.1).
+The NLR_like_bNACHT09 system in *Parabacteroides johnsonii* (GCF_020735865.1, NZ_CP085975) is composed of 1 protein: NLR_like_bNACHT09 (WP_009859882.1)
## Distribution of the system among prokaryotes
-The NLR system is present in a total of 186 different species.
+Among the 22,803 complete genomes of RefSeq, the NLR is detected in 453 genomes (1.99 %).
-Among the 22k complete genomes of RefSeq, this system is present in 453 genomes (2.0 %).
+The system was detected in 205 different species.
{max-width=750px}
-*Proportion of genome encoding the NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/old_exonuclease.md b/content/3.defense-systems/old_exonuclease.md
index be35419789befee2618fed2688db18f9b93bd93e..e438b40a99a021c69904f48fe5214f70cad6511d 100644
--- a/content/3.defense-systems/old_exonuclease.md
+++ b/content/3.defense-systems/old_exonuclease.md
@@ -27,23 +27,24 @@ The old_exonuclease is dsDNA exonuclease that digest in the 5' to 3' direction :
## Example of genomic structure
-The Old_exonuclease system is composed of one protein: Old_exonuclease.
+The Old_exonuclease is composed of 1 protein: Old_exonuclease.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Old_exonuclease system in the genome of *Escherichia coli* (GCF_016904335.1) is composed of 1 protein: Old_exonuclease (WP_015979595.1).
+The Old_exonuclease system in *Shewanella xiamenensis* (GCF_022453805.1, NZ_CP092630) is composed of 1 protein: Old_exonuclease (WP_240293412.1)
## Distribution of the system among prokaryotes
-The Old_exonuclease system is present in a total of 53 different species.
+Among the 22,803 complete genomes of RefSeq, the Old_exonuclease is detected in 102 genomes (0.45 %).
-Among the 22k complete genomes of RefSeq, this system is present in 102 genomes (0.4 %).
+The system was detected in 56 different species.
{max-width=750px}
-*Proportion of genome encoding the Old_exonuclease system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Old_exonuclease system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/olokun.md b/content/3.defense-systems/olokun.md
index 3ec671eea84d6cfc3aa45db4527e3bef4fee6959..390ba0afed9dde50e4b30a056e455e723f4ea8c2 100644
--- a/content/3.defense-systems/olokun.md
+++ b/content/3.defense-systems/olokun.md
@@ -33,23 +33,24 @@ To our knowledde, the molecular mechanism is unknown. Please update.
## Example of genomic structure
-The Olokun system is composed of 2 proteins: OloA and, OloB.
+The Olokun is composed of 2 proteins: OloA and OloB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Olokun system in the genome of *Vibrio cyclitrophicus* (GCF_023206035.1) is composed of 2 proteins: OloA (WP_016800143.1)and, OloB (WP_029203700.1).
+The Olokun system in *Klebsiella quasipneumoniae* (GCF_015286025.1, NZ_CP063902) is composed of 2 proteins OloA (WP_227667429.1) OloB (WP_194418165.1)
## Distribution of the system among prokaryotes
-The Olokun system is present in a total of 132 different species.
+Among the 22,803 complete genomes of RefSeq, the Olokun is detected in 242 genomes (1.06 %).
-Among the 22k complete genomes of RefSeq, this system is present in 252 genomes (1.1 %).
+The system was detected in 137 different species.
{max-width=750px}
-*Proportion of genome encoding the Olokun system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Olokun system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pago.md b/content/3.defense-systems/pago.md
index 2a24e5df0cce49496f38339909231d0b65dda718..9dd7d2049b551bfd315787f71b06ea2c6f6eba97 100644
--- a/content/3.defense-systems/pago.md
+++ b/content/3.defense-systems/pago.md
@@ -15,23 +15,44 @@ tableColumns:
# pAgo
## Example of genomic structure
-The pAgo system is composed of one protein: pAgo_Short.
+A total of 6 subsystems have been described for the pAgo system.
-Here is an example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-pAgo system in the genome of *Ensifer adhaerens* (GCF_020405145.1) is composed of 1 protein: pAgo_LongB (WP_218685258.1).
+The pAgo_LongA system in *Halosimplex pelagicum* (GCF_013415905.1, NZ_CP058909) is composed of 1 protein: pAgo_LongA (WP_179918860.1)
+
+{max-width=750px}
+
+The pAgo_LongB system in *Serratia fonticola* (GCF_019252525.1, NZ_CP072742) is composed of 2 proteins pAgo_LongB (WP_218520044.1) EcAgaN (WP_235784821.1)
+
+{max-width=750px}
+
+The pAgo_S1A system in *Parabacteroides merdae* (GCF_020735605.1, NZ_CP085927) is composed of 2 proteins pAgo_S1A (WP_227945673.1) pAgo_S1A (WP_227945674.1)
+
+{max-width=750px}
+
+The pAgo_S1B system in *Comamonas flocculans* (GCF_007954405.1, NZ_CP042344) is composed of 2 proteins SIR2APAZ (WP_146914209.1) pAgo_S1B (WP_146913473.1)
+
+{max-width=750px}
+
+The pAgo_S2B system in *Granulicella tundricola* (GCF_000178975.2, NC_015064) is composed of 2 proteins XAPAZ (WP_013581437.1) pAgo_S2B (WP_013581438.1)
+
+{max-width=750px}
+
+The pAgo_SPARTA system in *Roseivivax sp. THAF30* (GCF_009363575.1, NZ_CP045389) is composed of 2 proteins TIRAPAZ (WP_152461295.1) pAgo_SPARTA (WP_152461296.1)
## Distribution of the system among prokaryotes
-The pAgo system is present in a total of 435 different species.
+Among the 22,803 complete genomes of RefSeq, the pAgo is detected in 575 genomes (2.52 %).
-Among the 22k complete genomes of RefSeq, this system is present in 598 genomes (2.6 %).
+The system was detected in 464 different species.
{max-width=750px}
-*Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/panchino_gp28.md b/content/3.defense-systems/panchino_gp28.md
index 8a94f856fe5ed99c298c1b5a4ee2b7f08ec501bc..0535dd85a03891b8d1a73a27dc3ae39703b7a79c 100644
--- a/content/3.defense-systems/panchino_gp28.md
+++ b/content/3.defense-systems/panchino_gp28.md
@@ -13,6 +13,27 @@ tableColumns:
## To do
+## Example of genomic structure
+
+The Panchino_gp28 is composed of 1 protein: gp28.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+The Panchino_gp28 system in *Burkholderia pseudomallei* (GCF_018228585.1, NZ_CP073731) is composed of 1 protein: gp28 (WP_249212015.1)
+
+## Distribution of the system among prokaryotes
+
+Among the 22,803 complete genomes of RefSeq, the Panchino_gp28 is detected in 16 genomes (0.07 %).
+
+The system was detected in 5 different species.
+
+{max-width=750px}
+
+Proportion of genome encoding the Panchino_gp28 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
+
## Structure
### Panchino_gp28
diff --git a/content/3.defense-systems/paris.md b/content/3.defense-systems/paris.md
index 4a08c649ca373a95771938e5412a9b5b153fe0db..5a2f7ab743cb5eaa7d114859816a6b890285576b 100644
--- a/content/3.defense-systems/paris.md
+++ b/content/3.defense-systems/paris.md
@@ -21,35 +21,29 @@ This system relies on an unknown [Abortive infection](/general-concepts/abortive
## Example of genomic structure
-The Paris system have been describe in a total of 4 subsystems.
+A total of 2 subsystems have been described for the Rst_PARIS system.
+The classical Paris is composed of two proteins AriA and AriB. The other type of Paris is the fused version with one AriAB protein.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-PARIS_I subsystem in the genome of *Salmonella enterica* (GCF_020715485.1) is composed of 2 proteins: AAA_15 (WP_001520831.1)and, DUF4435 (WP_010989064.1).
+The PARIS_I system in *Streptomyces sampsonii* (GCF_001704195.1, NZ_CP016824) is composed of 2 proteins AriA_AAA15 (WP_079165307.1) AriB_DUF4435_I (WP_143067273.1)
-{max-width=750px}
+{max-width=750px}
-PARIS_II subsystem in the genome of *Enterobacter cloacae* (GCF_023238665.1) is composed of 2 proteins: DUF4435 (WP_071830092.1)and, AAA_21 (WP_061772587.1).
-
-{max-width=750px}
-
-PARIS_II_merge subsystem in the genome of *Desulfovibrio desulfuricans* (GCF_017815575.1) is composed of 1 protein: AAA_21_DUF4435 (WP_209818471.1).
-
-{max-width=750px}
-
-PARIS_I_merge subsystem in the genome of *Sideroxydans lithotrophicus* (GCF_000025705.1) is composed of 1 protein: AAA_15_DUF4435 (WP_013030315.1).
+The PARIS_I_merge system in *Rhizobium sp. SL42* (GCF_021729845.1, NZ_CP063397) is composed of 1 protein: AAA_15_DUF4435 (WP_237370054.1)
## Distribution of the system among prokaryotes
-The Paris system is present in a total of 463 different species.
+Among the 22,803 complete genomes of RefSeq, the Paris is detected in 1128 genomes (4.95 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1145 genomes (5.0 %).
+The system was detected in 518 different species.
{max-width=750px}
-*Proportion of genome encoding the Paris system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Paris system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-lambda-1.md b/content/3.defense-systems/pd-lambda-1.md
index cf9aa0a4969da1bbb0b8bdd40dae4376ea232b2f..45179650be0119d192f3cb5d8a6ad8b25cd20f25 100644
--- a/content/3.defense-systems/pd-lambda-1.md
+++ b/content/3.defense-systems/pd-lambda-1.md
@@ -29,23 +29,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The PD-Lambda-1 system is composed of one protein: PD-Lambda-1.
+The PD-Lambda-1 is composed of 1 protein: PD-Lambda-1.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-Lambda-1 system in the genome of *Olleya sp.* (GCF_002831645.1) is composed of 1 protein: PD-Lambda-1 (WP_101017806.1).
+The PD-Lambda-1 system in *Gemmata massiliana* (GCF_901538265.1, NZ_LR593886) is composed of 1 protein: PD-Lambda-1 (WP_197909633.1)
## Distribution of the system among prokaryotes
-The PD-Lambda-1 system is present in a total of 445 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-Lambda-1 is detected in 1301 genomes (5.71 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1323 genomes (5.8 %).
+The system was detected in 483 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-lambda-2.md b/content/3.defense-systems/pd-lambda-2.md
index ef269f276bddc678340d52706bf2df90ac0fb329..c8f1704987b75c87633621716d1fa3291acbdc27 100644
--- a/content/3.defense-systems/pd-lambda-2.md
+++ b/content/3.defense-systems/pd-lambda-2.md
@@ -15,23 +15,24 @@ tableColumns:
# PD-Lambda-2
## Example of genomic structure
-The PD-Lambda-2 system is composed of 3 proteins: PD-Lambda-2_C, PD-Lambda-2_B and, PD-Lambda-2_A.
+The PD-Lambda-2 is composed of 3 proteins: PD-Lambda-2_A, PD-Lambda-2_B and PD-Lambda-2_C.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-Lambda-2 system in the genome of *Pseudomonas aeruginosa* (GCF_013341295.1) is composed of 3 proteins: PD-Lambda-2_C (WP_023115149.1), PD-Lambda-2_B (WP_014833925.1)and, PD-Lambda-2_A (WP_003116393.1).
+The PD-Lambda-2 system in *Vibrio parahaemolyticus* (GCF_013393845.1, NZ_CP040100) is composed of 3 proteins PD-Lambda-2_C (WP_116869984.1) PD-Lambda-2_B (WP_029809306.1) PD-Lambda-2_A (WP_029809305.1)
## Distribution of the system among prokaryotes
-The PD-Lambda-2 system is present in a total of 52 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-Lambda-2 is detected in 122 genomes (0.54 %).
-Among the 22k complete genomes of RefSeq, this system is present in 122 genomes (0.5 %).
+The system was detected in 59 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-lambda-3.md b/content/3.defense-systems/pd-lambda-3.md
index aaa7a1cab979592db7726be13b4dc1b544b3d31d..00b4eea3ff56c669b7369278bff6c8e5c70f6c46 100644
--- a/content/3.defense-systems/pd-lambda-3.md
+++ b/content/3.defense-systems/pd-lambda-3.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The PD-Lambda-3 system is composed of 2 proteins: PD-Lambda-3_B and, PD-Lambda-3_A.
+The PD-Lambda-3 is composed of 2 proteins: PD-Lambda-3_A and PD-Lambda-3_B.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-Lambda-3 system in the genome of *Serratia rubidaea* (GCF_900478395.1) is composed of 2 proteins: PD-Lambda-3_A (WP_227673955.1)and, PD-Lambda-3_B (WP_047063039.1).
+The PD-Lambda-3 system in *Enterobacter sp. CRENT-193* (GCF_002787395.1, NZ_CP024812) is composed of 2 proteins PD-Lambda-3_A (WP_001542736.1) PD-Lambda-3_B (WP_039268887.1)
## Distribution of the system among prokaryotes
-The PD-Lambda-3 system is present in a total of 24 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-Lambda-3 is detected in 72 genomes (0.32 %).
-Among the 22k complete genomes of RefSeq, this system is present in 74 genomes (0.3 %).
+The system was detected in 28 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-lambda-4.md b/content/3.defense-systems/pd-lambda-4.md
index 70847048d5a614600b1cba6c7381b1693c082014..2ec229f2f4a7b56737b47b85bad21465676c0e4a 100644
--- a/content/3.defense-systems/pd-lambda-4.md
+++ b/content/3.defense-systems/pd-lambda-4.md
@@ -14,23 +14,24 @@ tableColumns:
# PD-Lambda-4
## Example of genomic structure
-The PD-Lambda-4 system is composed of 2 proteins: PD-Lambda-4_A and, PD-Lambda-4_B.
+The PD-Lambda-4 is composed of 2 proteins: PD-Lambda-4_A and PD-Lambda-4_B.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-Lambda-4 system in the genome of *Enterobacter asburiae* (GCF_023023265.1) is composed of 2 proteins: PD-Lambda-4_A (WP_246916891.1)and, PD-Lambda-4_B (WP_241182936.1).
+The PD-Lambda-4 system in *Serratia sp. LS-1* (GCF_003719595.1, NZ_CP033504) is composed of 2 proteins PD-Lambda-4_B (WP_123061920.1) PD-Lambda-4_A (WP_123061921.1)
## Distribution of the system among prokaryotes
-The PD-Lambda-4 system is present in a total of 13 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-Lambda-4 is detected in 69 genomes (0.3 %).
-Among the 22k complete genomes of RefSeq, this system is present in 75 genomes (0.3 %).
+The system was detected in 14 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-lambda-5.md b/content/3.defense-systems/pd-lambda-5.md
index e9be02d76a7e3723153640ffba8bc5976ba05e1a..b18ff6c2642eb95be173e5456f7041a08be3f3b8 100644
--- a/content/3.defense-systems/pd-lambda-5.md
+++ b/content/3.defense-systems/pd-lambda-5.md
@@ -25,23 +25,24 @@ PD-lambda-5 molecular mechanism has not been described to date. It confers prote
## Example of genomic structure
-The PD-Lambda-5 system is composed of 2 proteins: PD-Lambda-5_A and, PD-Lambda-5_B.
+The PD-Lambda-5 is composed of 2 proteins: PD-Lambda-5_A and PD-Lambda-5_B.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-Lambda-5 system in the genome of *Chromobacterium rhizoryzae* (GCF_020544465.1) is composed of 2 proteins: PD-Lambda-5_B (WP_227108065.1)and, PD-Lambda-5_A (WP_227108067.1).
+The PD-Lambda-5 system in *Plantactinospora sp. BB1* (GCF_003030385.1, NZ_CP028159) is composed of 2 proteins PD-Lambda-5_A (WP_159104731.1) PD-Lambda-5_B (WP_199853739.1)
## Distribution of the system among prokaryotes
-The PD-Lambda-5 system is present in a total of 210 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-Lambda-5 is detected in 286 genomes (1.25 %).
-Among the 22k complete genomes of RefSeq, this system is present in 361 genomes (1.6 %).
+The system was detected in 186 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-lambda-6.md b/content/3.defense-systems/pd-lambda-6.md
index ac18e18d71b37b69b3d1e82883bbcb28380b44e3..19b5a462428547f7845062f82c7f48622fe9f5ae 100644
--- a/content/3.defense-systems/pd-lambda-6.md
+++ b/content/3.defense-systems/pd-lambda-6.md
@@ -14,23 +14,24 @@ tableColumns:
# PD-Lambda-6
## Example of genomic structure
-The PD-Lambda-6 system is composed of one protein: PD-Lambda-6.
+The PD-Lambda-6 is composed of 1 protein: PD-Lambda-6.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-Lambda-6 system in the genome of *Escherichia albertii* (GCF_003864095.1) is composed of 1 protein: PD-Lambda-6 (WP_125059614.1).
+The PD-Lambda-6 system in *Enterobacter asburiae* (GCF_013782005.1, NZ_CP056126) is composed of 1 protein: PD-Lambda-6 (WP_181599444.1)
## Distribution of the system among prokaryotes
-The PD-Lambda-6 system is present in a total of 12 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-Lambda-6 is detected in 20 genomes (0.09 %).
-Among the 22k complete genomes of RefSeq, this system is present in 21 genomes (0.1 %).
+The system was detected in 11 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-1.md b/content/3.defense-systems/pd-t4-1.md
index 5e5426a5f33cb62085bc2de162ee54069e6e5a43..9d41d4a2fc9120a285ecc546a67f004dad51b271 100644
--- a/content/3.defense-systems/pd-t4-1.md
+++ b/content/3.defense-systems/pd-t4-1.md
@@ -15,23 +15,24 @@ tableColumns:
# PD-T4-1
## Example of genomic structure
-The PD-T4-1 system is composed of one protein: PD-T4-1.
+The PD-T4-1 is composed of 1 protein: PD-T4-1.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-1 system in the genome of *Bradyrhizobium diazoefficiens* (GCF_016616885.1) is composed of 1 protein: PD-T4-1 (WP_200471933.1).
+The PD-T4-1 system in *Macrococcus armenti* (GCF_020097055.1, NZ_CP083595) is composed of 1 protein: PD-T4-1 (WP_224185715.1)
## Distribution of the system among prokaryotes
-The PD-T4-1 system is present in a total of 38 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-1 is detected in 209 genomes (0.92 %).
-Among the 22k complete genomes of RefSeq, this system is present in 209 genomes (0.9 %).
+The system was detected in 38 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-10.md b/content/3.defense-systems/pd-t4-10.md
index ac6ae462b194a8f84446b58b011227e7c679cec5..4c479ab12ee83fac585fe59551411a46e77730d6 100644
--- a/content/3.defense-systems/pd-t4-10.md
+++ b/content/3.defense-systems/pd-t4-10.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The PD-T4-10 system is composed of 2 proteins: PD-T4-10_B and, PD-T4-10_A.
+The PD-T4-10 is composed of 2 proteins: PD-T4-10_A and PD-T4-10_B.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-10 system in the genome of *Salmonella enterica* (GCF_022559465.1) is composed of 2 proteins: PD-T4-10_A (WP_109288182.1)and, PD-T4-10_B (WP_001585426.1).
+The PD-T4-10 system in *Escherichia fergusonii* (GCF_019047545.1, NZ_CP077242) is composed of 2 proteins PD-T4-10_A (WP_032236482.1) PD-T4-10_B (WP_032236481.1)
## Distribution of the system among prokaryotes
-The PD-T4-10 system is present in a total of 40 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-10 is detected in 33 genomes (0.14 %).
-Among the 22k complete genomes of RefSeq, this system is present in 68 genomes (0.3 %).
+The system was detected in 23 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-2.md b/content/3.defense-systems/pd-t4-2.md
index d01d0fdc3ae65ee016d6f57f6bde3c5ad7ea01f6..2e094b66702c47e23e5c3e90c80f7459329405fa 100644
--- a/content/3.defense-systems/pd-t4-2.md
+++ b/content/3.defense-systems/pd-t4-2.md
@@ -15,23 +15,24 @@ tableColumns:
# PD-T4-2
## Example of genomic structure
-The PD-T4-2 system is composed of 2 proteins: PD-T4-2_B and, PD-T4-2_A.
+The PD-T4-2 is composed of 2 proteins: PD-T4-2_A and PD-T4-2_B.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-2 system in the genome of *Microcystis viridis* (GCF_003945305.1) is composed of 2 proteins: PD-T4-2_B (WP_164517006.1)and, PD-T4-2_A (WP_125731928.1).
+The PD-T4-2 system in *Jeotgalibaca sp. PTS2502* (GCF_001975685.1, NZ_CP019433) is composed of 2 proteins PD-T4-2_A (WP_083686895.1) PD-T4-2_B (WP_076765701.1)
## Distribution of the system among prokaryotes
-The PD-T4-2 system is present in a total of 28 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-2 is detected in 33 genomes (0.14 %).
-Among the 22k complete genomes of RefSeq, this system is present in 33 genomes (0.1 %).
+The system was detected in 28 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-3.md b/content/3.defense-systems/pd-t4-3.md
index b97d71f954279bfda3cb8d8bccbe446afac5fb22..9d2ac0923215a6e18a1add3a62cfd528182c57d5 100644
--- a/content/3.defense-systems/pd-t4-3.md
+++ b/content/3.defense-systems/pd-t4-3.md
@@ -27,23 +27,24 @@ the molecular mechanism of this system is unknown
## Example of genomic structure
-The PD-T4-3 system is composed of one protein: PD-T4-3.
+The PD-T4-3 is composed of 1 protein: PD-T4-3.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-3 system in the genome of *Salmonella enterica* (GCF_009664795.1) is composed of 1 protein: PD-T4-3 (WP_000353908.1).
+The PD-T4-3 system in *Morganella morganii* (GCF_018802485.1, NZ_CP064826) is composed of 1 protein: PD-T4-3 (WP_214179544.1)
## Distribution of the system among prokaryotes
-The PD-T4-3 system is present in a total of 139 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-3 is detected in 1314 genomes (5.76 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1313 genomes (5.8 %).
+The system was detected in 172 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-4.md b/content/3.defense-systems/pd-t4-4.md
index 65ed8082a0e02eb1b67be302306604da16aaed5b..6821b9a38a19d550849ff04840fba0e4abae7563 100644
--- a/content/3.defense-systems/pd-t4-4.md
+++ b/content/3.defense-systems/pd-t4-4.md
@@ -25,23 +25,24 @@ PD-T4-4 molecular mechanism is currently unknown, although it is most likely an
## Example of genomic structure
-The PD-T4-4 system is composed of 2 proteins: PD-T4-4_A and, PD-T4-4_B.
+The PD-T4-4 is composed of 2 proteins: PD-T4-4_A and PD-T4-4_B.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-4 system in the genome of *Escherichia coli* (GCF_013376895.1) is composed of 2 proteins: PD-T4-4_B (WP_176670803.1) and, PD-T4-4_A (WP_027920142.1).
+The PD-T4-4 system in *Thiothrix subterranea* (GCF_016772315.1, NZ_CP053482) is composed of 2 proteins PD-T4-4_A (WP_202716711.1) PD-T4-4_B (WP_202716712.1)
## Distribution of the system among prokaryotes
-The PD-T4-4 system is present in a total of 40 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-4 is detected in 50 genomes (0.22 %).
-Among the 22k complete genomes of RefSeq, this system is present in 53 genomes (0.2 %).
+The system was detected in 37 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-5.md b/content/3.defense-systems/pd-t4-5.md
index ba44a6c39779630199c623487ed8e687a2c49a1f..bb7b919e7770e2f42d54134e2ec8ecfcbab37bec 100644
--- a/content/3.defense-systems/pd-t4-5.md
+++ b/content/3.defense-systems/pd-t4-5.md
@@ -15,23 +15,24 @@ tableColumns:
# PD-T4-5
## Example of genomic structure
-The PD-T4-5 system is composed of one protein: PD-T4-5.
+The PD-T4-5 is composed of 1 protein: PD-T4-5.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-5 system in the genome of *Achromobacter sp.* (GCF_020541125.1) is composed of 1 protein: PD-T4-5 (WP_180098530.1).
+The PD-T4-5 system in *Grimontia hollisae* (GCF_009665295.1, NZ_CP035690) is composed of 1 protein: PD-T4-5 (WP_154124046.1)
## Distribution of the system among prokaryotes
-The PD-T4-5 system is present in a total of 113 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-5 is detected in 587 genomes (2.57 %).
-Among the 22k complete genomes of RefSeq, this system is present in 587 genomes (2.6 %).
+The system was detected in 128 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-6.md b/content/3.defense-systems/pd-t4-6.md
index 4748ba2e812dfffbfeb8c73a9f665875cf2949fc..9ead59fa61d0cd8868e1859a92541a391e44a9d4 100644
--- a/content/3.defense-systems/pd-t4-6.md
+++ b/content/3.defense-systems/pd-t4-6.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The PD-T4-6 system is composed of one protein: PD-T4-6.
+The PD-T4-6 is composed of 1 protein: PD-T4-6.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-6 system in the genome of *Pseudomonas aeruginosa* (GCF_016584725.1) is composed of 1 protein: PD-T4-6 (WP_023875836.1).
+The PD-T4-6 system in *Streptococcus ruminantium* (GCF_021654555.1, NZ_AP025333) is composed of 1 protein: PD-T4-6 (WP_024532776.1)
## Distribution of the system among prokaryotes
-The PD-T4-6 system is present in a total of 18 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-6 is detected in 88 genomes (0.39 %).
-Among the 22k complete genomes of RefSeq, this system is present in 88 genomes (0.4 %).
+The system was detected in 18 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-7.md b/content/3.defense-systems/pd-t4-7.md
index b3871a3e40356b1d9976c7b662833039f9a90278..e60b1dd2ef5650f2d6f4c3b1a78decb03fa91d96 100644
--- a/content/3.defense-systems/pd-t4-7.md
+++ b/content/3.defense-systems/pd-t4-7.md
@@ -28,23 +28,24 @@ Vassalo et al. :ref{doi=10.1038/s41564-022-01219-4} state that PD-T4-7 functions
## Example of genomic structure
-The PD-T4-7 system is composed of one protein: PD-T4-7.
+The PD-T4-7 is composed of 1 protein: PD-T4-7.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-7 system in the genome of *Providencia alcalifaciens* (GCF_915401745.1) is composed of 1 protein: PD-T4-7 (WP_036975088.1).
+The PD-T4-7 system in *Thalassospira sp. B30-1* (GCF_015767575.1, NZ_CP065232) is composed of 1 protein: PD-T4-7 (WP_139190007.1)
## Distribution of the system among prokaryotes
-The PD-T4-7 system is present in a total of 97 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-7 is detected in 155 genomes (0.68 %).
-Among the 22k complete genomes of RefSeq, this system is present in 156 genomes (0.7 %).
+The system was detected in 100 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-7 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-7 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-8.md b/content/3.defense-systems/pd-t4-8.md
index cbfc5762fbc50de6e93a766d73086d315fb88968..b1cd9b9cbfb0763509558dfa612d5c833e703fb1 100644
--- a/content/3.defense-systems/pd-t4-8.md
+++ b/content/3.defense-systems/pd-t4-8.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The PD-T4-8 system is composed of one protein: PD-T4-8.
+The PD-T4-8 is composed of 1 protein: PD-T4-8.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-8 system in the genome of *Pectobacterium brasiliense* (GCF_001932635.1) is composed of 1 protein: PD-T4-8 (WP_075277998.1).
+The PD-T4-8 system in *Algoriphagus sp. Y33* (GCF_014838715.1, NZ_CP061947) is composed of 1 protein: PD-T4-8 (WP_144603961.1)
## Distribution of the system among prokaryotes
-The PD-T4-8 system is present in a total of 48 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-8 is detected in 89 genomes (0.39 %).
-Among the 22k complete genomes of RefSeq, this system is present in 91 genomes (0.4 %).
+The system was detected in 50 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-8 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-8 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t4-9.md b/content/3.defense-systems/pd-t4-9.md
index 1ded26e1fbfbcfd1a1dfa9daca4184a7f82bf3b8..56c98f5736a442f5cbeb4f02f58f876e4339658d 100644
--- a/content/3.defense-systems/pd-t4-9.md
+++ b/content/3.defense-systems/pd-t4-9.md
@@ -15,23 +15,24 @@ tableColumns:
# PD-T4-9
## Example of genomic structure
-The PD-T4-9 system is composed of 3 proteins: PD-T4-9_C, PD-T4-9_B and, PD-T4-9_A.
+The PD-T4-9 is composed of 3 proteins: PD-T4-9_A, PD-T4-9_B and PD-T4-9_C.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T4-9 system in the genome of *Escherichia coli* (GCF_018223665.1) is composed of 3 proteins: PD-T4-9_A (WP_061089969.1), PD-T4-9_B (WP_061089970.1)and, PD-T4-9_C (WP_061089971.1).
+The PD-T4-9 system in *Vibrio parahaemolyticus* (GCF_001700835.1, NZ_CP010883) is composed of 3 proteins PD-T4-9_C (WP_065870458.1) PD-T4-9_B (WP_141106056.1) PD-T4-9_A (WP_065870460.1)
## Distribution of the system among prokaryotes
-The PD-T4-9 system is present in a total of 93 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T4-9 is detected in 141 genomes (0.62 %).
-Among the 22k complete genomes of RefSeq, this system is present in 148 genomes (0.6 %).
+The system was detected in 88 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T4-9 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T4-9 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t7-1.md b/content/3.defense-systems/pd-t7-1.md
index 356a8ec76e488223740b4da4ccc1af000a8a54f3..b7085c3e435c288da876ae7448fd233b9cd750ae 100644
--- a/content/3.defense-systems/pd-t7-1.md
+++ b/content/3.defense-systems/pd-t7-1.md
@@ -14,23 +14,24 @@ tableColumns:
# PD-T7-1
## Example of genomic structure
-The PD-T7-1 system is composed of one protein: PD-T7-1.
+The PD-T7-1 is composed of 1 protein: PD-T7-1.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T7-1 system in the genome of *Escherichia coli* (GCF_007833255.1) is composed of 1 protein: PD-T7-1 (WP_000008839.1).
+The PD-T7-1 system in *Klebsiella sp. P1927* (GCF_018204675.1, NZ_CP073377) is composed of 1 protein: PD-T7-1 (WP_004150873.1)
## Distribution of the system among prokaryotes
-The PD-T7-1 system is present in a total of 136 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T7-1 is detected in 748 genomes (3.28 %).
-Among the 22k complete genomes of RefSeq, this system is present in 755 genomes (3.3 %).
+The system was detected in 146 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T7-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T7-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t7-2.md b/content/3.defense-systems/pd-t7-2.md
index 96f4acf8a46dac74578efd3b84fcf26fca64efe2..fcc69e05dbeb4e7c1239d0b273af312608a70914 100644
--- a/content/3.defense-systems/pd-t7-2.md
+++ b/content/3.defense-systems/pd-t7-2.md
@@ -15,23 +15,24 @@ tableColumns:
# PD-T7-2
## Example of genomic structure
-The PD-T7-2 system is composed of 2 proteins: PD-T7-2_A and, PD-T7-2_B.
+The PD-T7-2 is composed of 2 proteins: PD-T7-2_A and PD-T7-2_B.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T7-2 system in the genome of *Sphingobium amiense* (GCF_003967075.1) is composed of 2 proteins: PD-T7-2_B (WP_066704003.1)and, PD-T7-2_A (WP_066704000.1).
+The PD-T7-2 system in *Lederbergia lenta* (GCF_900478165.1, NZ_LS483476) is composed of 2 proteins PD-T7-2_A (WP_066145327.1) PD-T7-2_B (WP_066145329.1)
## Distribution of the system among prokaryotes
-The PD-T7-2 system is present in a total of 606 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T7-2 is detected in 1483 genomes (6.5 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1535 genomes (6.7 %).
+The system was detected in 667 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T7-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T7-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t7-3.md b/content/3.defense-systems/pd-t7-3.md
index 2672d4863fb216850c5a11fcae3487791cb25ed0..469689e5a171f1eb74068a43e6adbc007ca09a68 100644
--- a/content/3.defense-systems/pd-t7-3.md
+++ b/content/3.defense-systems/pd-t7-3.md
@@ -26,23 +26,24 @@ As far as we are aware, the molecular mechanism of PD-T7-3 is unknown.
## Example of genomic structure
-The PD-T7-3 system is composed of one protein: PD-T7-3.
+The PD-T7-3 is composed of 1 protein: PD-T7-3.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T7-3 system in the genome of *Alistipes sp.* (GCF_009557455.1) is composed of 1 protein: PD-T7-3 (WP_153498146.1).
+The PD-T7-3 system in *Paraglaciecola psychrophila* (GCF_000347635.1, NC_020514) is composed of 1 protein: PD-T7-3 (WP_007636449.1)
## Distribution of the system among prokaryotes
-The PD-T7-3 system is present in a total of 127 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T7-3 is detected in 209 genomes (0.92 %).
-Among the 22k complete genomes of RefSeq, this system is present in 215 genomes (0.9 %).
+The system was detected in 130 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T7-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T7-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t7-4.md b/content/3.defense-systems/pd-t7-4.md
index 7b72b51f9a7d3d5835fd4931732358f291d7e1da..9a17b14236530f17434bbf9cbb9b962a29e08074 100644
--- a/content/3.defense-systems/pd-t7-4.md
+++ b/content/3.defense-systems/pd-t7-4.md
@@ -15,23 +15,24 @@ tableColumns:
# PD-T7-4
## Example of genomic structure
-The PD-T7-4 system is composed of one protein: PD-T7-4.
+The PD-T7-4 is composed of 1 protein: PD-T7-4.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T7-4 system in the genome of *Parashewanella tropica* (GCF_004358445.1) is composed of 1 protein: PD-T7-4 (WP_133406898.1).
+The PD-T7-4 system in *Salinibacterium hongtaonis* (GCF_003065485.1, NZ_CP026951) is composed of 1 protein: PD-T7-4 (WP_108515598.1)
## Distribution of the system among prokaryotes
-The PD-T7-4 system is present in a total of 204 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T7-4 is detected in 492 genomes (2.16 %).
-Among the 22k complete genomes of RefSeq, this system is present in 501 genomes (2.2 %).
+The system was detected in 218 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T7-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T7-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pd-t7-5.md b/content/3.defense-systems/pd-t7-5.md
index 3533e9d27456aa8cde41089ecb9ec8d5bcf5031c..22c4aff5bf40c067ad54a2ba50cb4a605ae10829 100644
--- a/content/3.defense-systems/pd-t7-5.md
+++ b/content/3.defense-systems/pd-t7-5.md
@@ -14,23 +14,24 @@ tableColumns:
# PD-T7-5
## Example of genomic structure
-The PD-T7-5 system is composed of one protein: PD-T7-5.
+The PD-T7-5 is composed of 1 protein: PD-T7-5.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PD-T7-5 system in the genome of *Bacillus cereus* (GCF_001941885.1) is composed of 1 protein: PD-T7-5 (WP_075395673.1).
+The PD-T7-5 system in *Shewanella putrefaciens* (GCF_019599085.1, NZ_CP080633) is composed of 1 protein: PD-T7-5 (WP_220590848.1)
## Distribution of the system among prokaryotes
-The PD-T7-5 system is present in a total of 128 different species.
+Among the 22,803 complete genomes of RefSeq, the PD-T7-5 is detected in 336 genomes (1.47 %).
-Among the 22k complete genomes of RefSeq, this system is present in 363 genomes (1.6 %).
+The system was detected in 129 different species.
{max-width=750px}
-*Proportion of genome encoding the PD-T7-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PD-T7-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pfiat.md b/content/3.defense-systems/pfiat.md
index c5debcb8c7ef1b9be241e5f19438ee5b66cdb6eb..a29dab0372b1f8aa4f48669c34894276b5882b16 100644
--- a/content/3.defense-systems/pfiat.md
+++ b/content/3.defense-systems/pfiat.md
@@ -15,23 +15,24 @@ tableColumns:
# PfiAT
## Example of genomic structure
-The PfiAT system is composed of 2 proteins: PfiA and, PfiT.
+The PfiAT is composed of 2 proteins: PfiA and PfiT.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PfiAT system in the genome of *Pseudomonas amygdali* (GCF_023207855.1) is composed of 2 proteins: PfiT (WP_096134620.1)and, PfiA (WP_057431469.1).
+The PfiAT system in *Desulfoscipio gibsoniae* (GCF_000233715.2, NC_021184) is composed of 2 proteins PfiA (WP_006521270.1) PfiT (WP_006521271.1)
## Distribution of the system among prokaryotes
-The PfiAT system is present in a total of 261 different species.
+Among the 22,803 complete genomes of RefSeq, the PfiAT is detected in 819 genomes (3.59 %).
-Among the 22k complete genomes of RefSeq, this system is present in 819 genomes (3.6 %).
+The system was detected in 308 different species.
{max-width=750px}
-*Proportion of genome encoding the PfiAT system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PfiAT system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/phrann_gp29_gp30.md b/content/3.defense-systems/phrann_gp29_gp30.md
index 69974c40fe3b07be6f00b524a98b92286c8f2329..f320d0a8c530c64b84855725c6558a2b90a83b7b 100644
--- a/content/3.defense-systems/phrann_gp29_gp30.md
+++ b/content/3.defense-systems/phrann_gp29_gp30.md
@@ -13,23 +13,24 @@ tableColumns:
## Example of genomic structure
-The phrann_gp29_gp30 system is composed of 2 proteins: gp30 and, gp29.
+The Phrann_gp29_gp30 is composed of 2 proteins: gp29 and gp30.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-phrann_gp29_gp30 system in the genome of *Mycobacterium tuberculosis* (GCF_002448055.1) is composed of 2 proteins: gp29 (WP_003407164.1)and, gp30 (WP_003407167.1).
+The Phrann_gp29_gp30 system in *Demequina sp. TMPB413* (GCF_020447105.2, NZ_CP096184) is composed of 2 proteins gp29 (WP_226094934.1) gp30 (WP_226094935.1)
## Distribution of the system among prokaryotes
-The phrann_gp29_gp30 system is present in a total of 35 different species.
+Among the 22,803 complete genomes of RefSeq, the Phrann_gp29_gp30 is detected in 312 genomes (1.37 %).
-Among the 22k complete genomes of RefSeq, this system is present in 314 genomes (1.4 %).
+The system was detected in 35 different species.
-{max-width=750px}
+{max-width=750px}
+
+Proportion of genome encoding the Phrann_gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-*Proportion of genome encoding the phrann_gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
## Experimental validation
<mermaid>
diff --git a/content/3.defense-systems/pif.md b/content/3.defense-systems/pif.md
index 952e18b87b2fa5049c7b13b9a03eff445687788a..8279c80fe49c99f3da4eaf1f7b7a9adf82ee3c07 100644
--- a/content/3.defense-systems/pif.md
+++ b/content/3.defense-systems/pif.md
@@ -31,23 +31,24 @@ PifA was later identified as the effector of the abortive infection :ref{doi=10.
## Example of genomic structure
-The Pif system is composed of 2 proteins: PifC and PifA.
+The Pif is composed of 2 proteins: PifA and PifC.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Pif system in the genome of *Escherichia coli* (GCF_018628815.1) is composed of 2 proteins: PifA (WP_000698737.1)and, PifC (WP_000952217.1).
+The Pif system in *Shigella flexneri* (GCF_022353545.1, NZ_CP055168) is composed of 2 proteins PifC (WP_000952217.1) PifA (WP_000698737.1)
## Distribution of the system among prokaryotes
-The Pif system is present in a total of 28 different species.
+Among the 22,803 complete genomes of RefSeq, the Pif is detected in 140 genomes (0.61 %).
-Among the 22k complete genomes of RefSeq, this system is present in 143 genomes (0.6 %).
+The system was detected in 25 different species.
{max-width=750px}
-*Proportion of genome encoding the Pif system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Pif system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/prrc.md b/content/3.defense-systems/prrc.md
index 7b51d8f5042796081d530d4ca7328c4f1551ab5c..09da95b9186a5fbd48e9e31181806b274edca33a 100644
--- a/content/3.defense-systems/prrc.md
+++ b/content/3.defense-systems/prrc.md
@@ -31,23 +31,24 @@ Because it sabotages the host's translation machinery, prrC is considered to be
## Example of genomic structure
-The PrrC system is composed of 4 proteins: EcoprrI, Type_I_S, PrrC and, Type_I_REases.
+The PrrC is composed of the PrrC protein and a type I restriction modification system.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PrrC system in the genome of *Streptococcus canis* (GCF_900636575.1) is composed of 4 proteins: Type_I_REases (WP_003046543.1), PrrC (WP_003046540.1), Type_I_S (WP_129544911.1)and, Type_I_MTases (WP_003046534.1).
+The PrrC system in *Parazoarcus communis* (GCF_003111645.1, NZ_CP022187) is composed of 4 proteins Type_I_REases (WP_108949925.1) Type_I_S (WP_108949926.1) PrrC (WP_108949927.1) Type_I_MTases (WP_108949929.1)
## Distribution of the system among prokaryotes
-The PrrC system is present in a total of 285 different species.
+Among the 22,803 complete genomes of RefSeq, the PrrC is detected in 705 genomes (3.09 %).
-Among the 22k complete genomes of RefSeq, this system is present in 705 genomes (3.1 %).
+The system was detected in 309 different species.
{max-width=750px}
-*Proportion of genome encoding the PrrC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PrrC system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/psyrta.md b/content/3.defense-systems/psyrta.md
index 71dfcf0d3636dee93c08db238f2bfe59c62e37c0..cd7deb73f2e1ab96c4fe28d124a8779a40055c0a 100644
--- a/content/3.defense-systems/psyrta.md
+++ b/content/3.defense-systems/psyrta.md
@@ -47,23 +47,24 @@ from :ref{doi=10.1016/j.chom.2022.09.017} :
## Example of genomic structure
-The PsyrTA system is composed of 2 proteins: PsyrT and, PsyrA.
+The PsyrTA is composed of 2 proteins: PsyrA and PsyrT.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-PsyrTA system in the genome of *Photorhabdus laumondii* (GCF_003343225.1) is composed of 2 proteins: PsyrT (WP_109791883.1)and, PsyrA (WP_113049635.1).
+The PsyrTA system in *Providencia rettgeri* (GCF_013702265.1, NZ_CP059348) is composed of 2 proteins PsyrT (WP_049246657.1) PsyrA (WP_001103168.1)
## Distribution of the system among prokaryotes
-The PsyrTA system is present in a total of 281 different species.
+Among the 22,803 complete genomes of RefSeq, the PsyrTA is detected in 629 genomes (2.76 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1435 genomes (6.3 %).
+The system was detected in 132 different species.
{max-width=750px}
-*Proportion of genome encoding the PsyrTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the PsyrTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/pycsar.md b/content/3.defense-systems/pycsar.md
index 9bffd49b7ba515e3884b0b6a0c9f4fd3aabc4309..dde91165b646dca6cfeae2105cbd299358b8af83 100644
--- a/content/3.defense-systems/pycsar.md
+++ b/content/3.defense-systems/pycsar.md
@@ -15,23 +15,26 @@ tableColumns:
# Pycsar
## Example of genomic structure
-The Pycsar system is composed of 2 proteins: AG_cyclase and, Effector_TIR.
+The Pycsar is composed of at least 2 proteins: a Cyclase and Effector.
-Here is an example found in the RefSeq database:
+Like the CBASS system, it can encode for a variety of different effectors.
+
+Here is an example found in the RefSeq database:
{max-width=750px}
-Pycsar system in the genome of *Staphylococcus aureus* (GCF_003186105.1) is composed of 2 proteins: AG_cyclase (WP_065316016.1)and, 2TM_5 (WP_000073144.1).
+The Pycsar system in *Nocardioides sambongensis* (GCF_006494815.1, NZ_CP041091) is composed of 2 proteins 2TM_5 (WP_141014207.1) AG_cyclase (WP_141014208.1)
## Distribution of the system among prokaryotes
-The Pycsar system is present in a total of 276 different species.
+Among the 22,803 complete genomes of RefSeq, the Pycsar is detected in 552 genomes (2.42 %).
-Among the 22k complete genomes of RefSeq, this system is present in 559 genomes (2.5 %).
+The system was detected in 295 different species.
{max-width=750px}
-*Proportion of genome encoding the Pycsar system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Pycsar system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/radar.md b/content/3.defense-systems/radar.md
index 8d705fb0c2279aeaea49bb3d08aa54baf7e5e267..3af879dc13165bcb8237a515d4d8e30cb047804d 100644
--- a/content/3.defense-systems/radar.md
+++ b/content/3.defense-systems/radar.md
@@ -23,27 +23,28 @@ RADAR mediates growth arrest upon infection and is therefore considered to be an
## Example of genomic structure
-The RADAR system have been describe in a total of 2 subsystems.
+A total of 2 subsystems have been described for the RADAR system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-radar_I subsystem in the genome of *Dickeya dianthicola* (GCF_014893095.1) is composed of 2 proteins: rdrB_I (WP_192988590.1)and, rdrA_I (WP_192988591.1).
+The radar_I system in *Vibrio splendidus* (GCF_022812155.1, NZ_CP089205) is composed of 2 proteins rdrA_I (WP_243585344.1) rdrB_I (WP_243585345.1)
-{max-width=750px}
+{max-width=750px}
-radar_II subsystem in the genome of *Klebsiella aerogenes* (GCF_008693885.1) is composed of 3 proteins: rdrD_II (WP_015705078.1), rdrB_II (WP_015705077.1)and, rdrA_II (WP_015705076.1).
+The radar_II system in *Enterobacter sp. JH25* (GCF_021725435.1, NZ_CP091319) is composed of 3 proteins rdrD_II (WP_022649082.1) rdrB_II (WP_227746616.1) rdrA_II (WP_022649084.1)
## Distribution of the system among prokaryotes
-The RADAR system is present in a total of 39 different species.
+Among the 22,803 complete genomes of RefSeq, the RADAR is detected in 135 genomes (0.59 %).
-Among the 22k complete genomes of RefSeq, this system is present in 135 genomes (0.6 %).
+The system was detected in 44 different species.
{max-width=750px}
-*Proportion of genome encoding the RADAR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the RADAR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/retron.md b/content/3.defense-systems/retron.md
index b4d528a67c07faa3aed277d6142af69d4e2e1131..be5a790d79ac6781586da2e050ef654e48c02b11 100644
--- a/content/3.defense-systems/retron.md
+++ b/content/3.defense-systems/retron.md
@@ -60,67 +60,68 @@ Several triggers were identified for the Sen2-TA system, including Dam that was
## Example of genomic structure
-The Retron system have been describe in a total of 16 subsystems.
+A total of 16 subsystems have been described for the Retron system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Retron_II subsystem in the genome of *Klebsiella pneumoniae* (GCF_904866255.1) is composed of 2 proteins: NDT2 (WP_057222224.1)and, RT_Tot (WP_048289034.1).
+The Retron_II system in *Agrobacterium tumefaciens* (GCF_017726655.1, NZ_CP072309) is composed of 2 proteins NDT (WP_209089758.1) RT_Tot (WP_209089760.1)
-{max-width=750px}
+{max-width=750px}
-Retron_IV subsystem in the genome of *Aliivibrio fischeri* (GCF_000011805.1) is composed of 2 proteins: RT_Tot (WP_011261677.1)and, 2TM (WP_236727775.1).
+The Retron_III system in *Dokdonia sp. 4H-3-7-5* (GCF_000212355.1, NC_015496) is composed of 3 proteins PRTase (WP_148236012.1) WH (WP_013752369.1) RT_Tot (WP_013752370.1)
-{max-width=750px}
+{max-width=750px}
-Retron_I_A subsystem in the genome of *Vibrio harveyi* (GCF_009184745.1) is composed of 3 proteins: RT_Tot (WP_152163686.1), ATPase_TypeIA (WP_152163687.1)and, HNH_TIGR02646 (WP_152163688.1).
+The Retron_IV system in *Pseudomonas lurida* (GCF_001708485.1, NZ_CP015639) is composed of 2 proteins RT_Tot (WP_081327059.1) 2TM (WP_145980332.1)
-{max-width=750px}
+{max-width=750px}
-Retron_I_B subsystem in the genome of *Vibrio vulnificus* (GCF_009665475.1) is composed of 2 proteins: ATPase_TOPRIM_COG3593 (WP_103277404.1)and, RT_Tot (WP_043877188.1).
+The Retron_I_A system in *Hafnia alvei* (GCF_902387815.1, NZ_LR699008) is composed of 3 proteins RT_Tot (WP_197737714.1) ATPase_TypeIA (WP_111329110.1) HNH_TIGR02646 (WP_111329111.1)
-{max-width=750px}
+{max-width=750px}
-Retron_I_C subsystem in the genome of *Listeria monocytogenes* (GCF_905219385.1) is composed of 1 protein: RT_1_C2 (WP_003726410.1).
+The Retron_I_B system in *Dickeya zeae* (GCF_012278555.1, NZ_CP033622) is composed of 2 proteins ATPase_TOPRIM_COG3593 (WP_168363308.1) RT_Tot (WP_168363309.1)
-{max-width=750px}
+{max-width=750px}
-Retron_V subsystem in the genome of *Proteus terrae* (GCF_013171285.1) is composed of 2 proteins: CSD (WP_004244726.1)and, RT_Tot (WP_109418979.1).
+The Retron_I_C system in *Proteus vulgaris* (GCF_009931275.1, NZ_CP034668) is composed of 1 protein: RT_1_C1 (WP_017628371.1)
-{max-width=750px}
+{max-width=750px}
-Retron_VI subsystem in the genome of *Pseudomonas eucalypticola* (GCF_013374995.1) is composed of 2 proteins: HTH (WP_245217789.1)and, RT_Tot (WP_176571652.1).
+The Retron_VI system in *Enterobacter roggenkampii* (GCF_013728935.1, NZ_CP056148) is composed of 2 proteins HTH (WP_008499884.1) RT_Tot (WP_016243639.1)
-{max-width=750px}
+{max-width=750px}
-Retron_VII_1 subsystem in the genome of *Pseudoxanthomonas mexicana* (GCF_014397415.1) is composed of 1 protein: RT_7_A1 (WP_187572543.1).
+The Retron_VII_1 system in *Hypericibacter terrae* (GCF_008728855.1, NZ_CP042906) is composed of 1 protein: RT_7_A1 (WP_151178207.1)
-{max-width=750px}
+{max-width=750px}
-Retron_VII_2 subsystem in the genome of *Bacillus mycoides* (GCF_018742105.1) is composed of 2 proteins: DUF3800 (WP_215564565.1)and, RT_Tot (WP_215564572.1).
+The Retron_VII_2 system in *Sideroxydans lithotrophicus* (GCF_000025705.1, NC_013959) is composed of 2 proteins RT_Tot (WP_013028226.1) DUF3800 (WP_013028227.1)
-{max-width=750px}
+{max-width=750px}
-Retron_XI subsystem in the genome of *Planococcus kocurii* (GCF_001465835.2) is composed of 1 protein: RT_11 (WP_058386256.1).
+The Retron_XI system in *Sphingopyxis granuli* (GCF_022637755.1, NZ_CP093335) is composed of 1 protein: RT_11 (WP_241940850.1)
-{max-width=750px}
+{max-width=750px}
-Retron_XII subsystem in the genome of *Stenotrophomonas acidaminiphila* (GCF_014109845.1) is composed of 1 protein: RT_12 (WP_182333825.1).
+The Retron_XII system in *Tenuifilum thalassicum* (GCF_013265555.1, NZ_CP041345) is composed of 1 protein: RT_12 (WP_173072943.1)
-{max-width=750px}
+{max-width=750px}
-Retron_XIII subsystem in the genome of *Delftia acidovorans* (GCF_016026535.1) is composed of 3 proteins: ARM (WP_197944577.1), WHSWIM (WP_197944578.1)and, RT_Tot (WP_065344905.1).
+The Retron_XIII system in *Clostridium saccharobutylicum* (GCF_002003365.1, NZ_CP016091) is composed of 3 proteins ARM (WP_022745963.1) WHSWIM (WP_022745966.1) RT_Tot (WP_022745969.1)
## Distribution of the system among prokaryotes
-The Retron system is present in a total of 731 different species.
+Among the 22,803 complete genomes of RefSeq, the Retron is detected in 2537 genomes (11.13 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2601 genomes (11.4 %).
+The system was detected in 840 different species.
{max-width=750px}
-*Proportion of genome encoding the Retron system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Retron system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rexab.md b/content/3.defense-systems/rexab.md
index bf7450194a637ee75a767decb03d043bbeed8751..06ccbd3a851b1051c19554acd82d637478a1ef2f 100644
--- a/content/3.defense-systems/rexab.md
+++ b/content/3.defense-systems/rexab.md
@@ -15,23 +15,24 @@ tableColumns:
# RexAB
## Example of genomic structure
-The RexAB system is composed of 2 proteins: RexA and, RexB.
+The RexAB is composed of 2 proteins: RexA and RexB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-RexAB system in the genome of *Escherichia coli* (GCF_008033315.1) is composed of 2 proteins: RexA (WP_000788349.1)and, RexB (WP_001245922.1).
+The RexAB system in *Klebsiella pneumoniae* (GCF_016780145.1, NZ_CP068798) is composed of 2 proteins RexB (WP_032749558.1) RexA (WP_077270569.1)
## Distribution of the system among prokaryotes
-The RexAB system is present in a total of 17 different species.
+Among the 22,803 complete genomes of RefSeq, the RexAB is detected in 73 genomes (0.32 %).
-Among the 22k complete genomes of RefSeq, this system is present in 73 genomes (0.3 %).
+The system was detected in 18 different species.
{max-width=750px}
-*Proportion of genome encoding the RexAB system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the RexAB system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rloc.md b/content/3.defense-systems/rloc.md
index 0ee3e092756f95b8ab9ee5c253ce1b9ec0ded973..798e25f99970b3f8b2beeb9185658b05a4e65934 100644
--- a/content/3.defense-systems/rloc.md
+++ b/content/3.defense-systems/rloc.md
@@ -15,23 +15,24 @@ tableColumns:
# RloC
## Example of genomic structure
-The RloC system is composed of one protein: RloC.
+The RloC is composed of 1 protein: RloC.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-RloC system in the genome of *Flavobacterium arcticum* (GCF_003344925.1) is composed of 1 protein: RloC (WP_114676820.1).
+The RloC system in *Pseudomonas aeruginosa* (GCF_000981825.1, NZ_CP011317) is composed of 1 protein: RloC (WP_010794466.1)
## Distribution of the system among prokaryotes
-The RloC system is present in a total of 803 different species.
+Among the 22,803 complete genomes of RefSeq, the RloC is detected in 1944 genomes (8.53 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1961 genomes (8.6 %).
+The system was detected in 919 different species.
{max-width=750px}
-*Proportion of genome encoding the RloC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the RloC system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rm.md b/content/3.defense-systems/rm.md
index bf3a3f6acc307a1439461f0f86f6fed1f98ce22e..8fd7eafa02975958bf1bed99bbd1e63767a87b0a 100644
--- a/content/3.defense-systems/rm.md
+++ b/content/3.defense-systems/rm.md
@@ -15,39 +15,40 @@ tableColumns:
# RM
## Example of genomic structure
-The RM system have been describe in a total of 5 subsystems.
+A total of 5 subsystems have been described for the RM system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-RM_Type_I subsystem in the genome of *Aeromonas veronii* (GCF_014169835.1) is composed of 4 proteins: Type_I_MTases (WP_182963881.1), Type_I_MTases (WP_182963881.1), Type_I_S (WP_182963883.1)and, Type_I_REases (WP_182963884.1).
+The RM_Type_I system in *Tessaracoccus flavescens* (GCF_001998865.1, NZ_CP019607) is composed of 3 proteins Type_I_MTases (WP_237268350.1) Type_I_S (WP_077346826.1) Type_I_REases (WP_237268249.1)
-{max-width=750px}
+{max-width=750px}
-RM_Type_II subsystem in the genome of *Mannheimia haemolytica* (GCF_007965905.1) is composed of 2 proteins: Type_II_MTases (WP_006248352.1)and, Type_II_REases (WP_006253295.1).
+The RM_Type_II system in *Aeromonas caviae* (GCF_000783775.2, NZ_CP026055) is composed of 2 proteins Type_II_MTases (WP_042865101.1) Type_II_REases (WP_042865102.1)
-{max-width=750px}
+{max-width=750px}
-RM_Type_IIG subsystem in the genome of *Spirochaeta africana* (GCF_000242595.2) is composed of 1 protein: Type_IIG (WP_014455422.1).
+The RM_Type_IIG system in *Microbacterium wangchenii* (GCF_004564355.1, NZ_CP038266) is composed of 1 protein: Type_IIG (WP_135067980.1)
-{max-width=750px}
+{max-width=750px}
-RM_Type_III subsystem in the genome of *Pannonibacter phragmitetus* (GCF_001484065.1) is composed of 2 proteins: Type_III_MTases (WP_058898889.1)and, Type_III_REases (WP_058898890.1).
+The RM_Type_III system in *Sphingobacterium spiritivorum* (GCF_016725325.1, NZ_CP068083) is composed of 2 proteins Type_III_REases (WP_139420208.1) Type_III_MTases (WP_139420206.1)
-{max-width=750px}
+{max-width=750px}
-RM_Type_IV subsystem in the genome of *Clostridioides difficile* (GCF_018884605.1) is composed of 1 protein: Type_IV_REases (WP_021364579.1).
+The RM_Type_IV system in *Halobaculum rubrum* (GCF_019880225.1, NZ_CP082284) is composed of 1 protein: Type_IV_REases (WP_222915961.1)
## Distribution of the system among prokaryotes
-The RM system is present in a total of 4699 different species.
+Among the 22,803 complete genomes of RefSeq, the RM is detected in 18264 genomes (80.09 %).
-Among the 22k complete genomes of RefSeq, this system is present in 19087 genomes (83.7 %).
+The system was detected in 6137 different species.
{max-width=750px}
-*Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rnlab.md b/content/3.defense-systems/rnlab.md
index 081ee724560511fd1b847799e183516853dd4eb6..9bff2f857e4832067549e9c2478926d4f7371af7 100644
--- a/content/3.defense-systems/rnlab.md
+++ b/content/3.defense-systems/rnlab.md
@@ -15,23 +15,24 @@ tableColumns:
# RnlAB
## Example of genomic structure
-The RnlAB system is composed of 2 proteins: RnlA and, RnlB.
+The RnlAB is composed of 2 proteins: RnlA and RnlB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-RnlAB system in the genome of *Escherichia coli* (GCF_014338505.1) is composed of 2 proteins: RnlA (WP_000155570.1)and, RnlB (WP_000461704.1).
+The RnlAB system in *Bacteroides caecimuris* (GCF_001688725.2, NZ_CP015401) is composed of 2 proteins RnlA (WP_004327332.1) RnlB (WP_004327330.1)
## Distribution of the system among prokaryotes
-The RnlAB system is present in a total of 71 different species.
+Among the 22,803 complete genomes of RefSeq, the RnlAB is detected in 279 genomes (1.22 %).
-Among the 22k complete genomes of RefSeq, this system is present in 284 genomes (1.2 %).
+The system was detected in 68 different species.
{max-width=750px}
-*Proportion of genome encoding the RnlAB system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the RnlAB system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rosmerta.md b/content/3.defense-systems/rosmerta.md
index 47f16a5def4bbe2e7e6920b57520aa6b434b97ad..cca150e7cb982623f3b606d9bb2d8d6244256d88 100644
--- a/content/3.defense-systems/rosmerta.md
+++ b/content/3.defense-systems/rosmerta.md
@@ -15,23 +15,24 @@ tableColumns:
# RosmerTA
## Example of genomic structure
-The RosmerTA system is composed of 2 proteins: RmrA_2634932349 and, RmrT_2634932349.
+The RosmerTA is composed of 2 proteins: RmrT and RmrA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-RosmerTA system in the genome of *Acinetobacter indicus* (GCF_002953575.2) is composed of 2 proteins: RmrT_2641389401 (WP_045796188.1)and, RmrA_2641389401 (WP_045796189.1).
+The RosmerTA system in *Paucibacter sp. KCTC 42545* (GCF_001477625.1, NZ_CP013692) is composed of 2 proteins RmrT_2662548665 (WP_231741552.1) RmrA_2662548665 (WP_058719324.1)
## Distribution of the system among prokaryotes
-The RosmerTA system is present in a total of 540 different species.
+Among the 22,803 complete genomes of RefSeq, the RosmerTA is detected in 2080 genomes (9.12 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2124 genomes (9.3 %).
+The system was detected in 613 different species.
{max-width=750px}
-*Proportion of genome encoding the RosmerTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the RosmerTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_2tm_1tm_tir.md b/content/3.defense-systems/rst_2tm_1tm_tir.md
index 15dc322cd058d45cc3d64e48ef9d933761005731..a616b1772d99291a86a9c935d2bd0dbc903e1fc3 100644
--- a/content/3.defense-systems/rst_2tm_1tm_tir.md
+++ b/content/3.defense-systems/rst_2tm_1tm_tir.md
@@ -12,23 +12,24 @@ tableColumns:
# Rst_2TM_1TM_TIR
## Example of genomic structure
-The Rst_2TM_1TM_TIR system is composed of 3 proteins: Rst_TIR_tm, Rst_1TM_TIR and, Rst_2TM_TIR.
+The Rst_2TM_1TM_TIR is composed of 3 proteins: Rst_2TM_TIR, Rst_TIR_tm and Rst_1TM_TIR.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Rst_2TM_1TM_TIR system in the genome of *Escherichia coli* (GCF_001900375.1) is composed of 3 proteins: Rst_TIR_tm (WP_023140578.1), Rst_1TM_TIR (WP_001534953.1)and, Rst_2TM_TIR (WP_023140577.1).
+The Rst_2TM_1TM_TIR system in *Escherichia coli* (GCF_004006575.1, NZ_CP034787) is composed of 3 proteins Rst_TIR_tm (WP_023140578.1) Rst_1TM_TIR (WP_001534953.1) Rst_2TM_TIR (WP_023140577.1)
## Distribution of the system among prokaryotes
-The Rst_2TM_1TM_TIR system is present in a total of 1 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_2TM_1TM_TIR is detected in 2 genomes (0.01 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2 genomes (0.0 %).
+The system was detected in 1 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_3hp.md b/content/3.defense-systems/rst_3hp.md
index bd08dc329afc9a28d99c22fe6ee4fb36ba80effe..f4316f5aa293512d54d2915112ee3a2b8005f936 100644
--- a/content/3.defense-systems/rst_3hp.md
+++ b/content/3.defense-systems/rst_3hp.md
@@ -28,23 +28,24 @@ As far as we are aware, the molecular mechanism is unknown.
## Example of genomic structure
-The Rst_3HP system is composed of 3 proteins: Hp1, Hp2 and, Hp3.
+The Rst_3HP is composed of 3 proteins: Hp1, Hp2 and Hp3.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Rst_3HP system in the genome of *Klebsiella pneumoniae* (GCF_016403065.1) is composed of 3 proteins: Hp3 (WP_004151009.1), Hp2 (WP_004151008.1)and, Hp1 (WP_004151007.1).
+The Rst_3HP system in *Aquitalea denitrificans* (GCF_009856625.1, NZ_CP047241) is composed of 3 proteins Hp1 (WP_159879082.1) Hp2 (WP_159879084.1) Hp3 (WP_159879086.1)
## Distribution of the system among prokaryotes
-The Rst_3HP system is present in a total of 83 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_3HP is detected in 417 genomes (1.83 %).
-Among the 22k complete genomes of RefSeq, this system is present in 420 genomes (1.8 %).
+The system was detected in 89 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_3HP system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_3HP system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_duf4238.md b/content/3.defense-systems/rst_duf4238.md
index decdcf112dfd8b8989151e76bf9346f2eb048608..f84a78153f3a59d184498024acbbcf0eb3302cdc 100644
--- a/content/3.defense-systems/rst_duf4238.md
+++ b/content/3.defense-systems/rst_duf4238.md
@@ -15,23 +15,24 @@ tableColumns:
# Rst_DUF4238
## Example of genomic structure
-The Rst_DUF4238 system is composed of one protein: DUF4238_Pers.
+The Rst_DUF4238 is composed of 1 protein: DUF4238.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Rst_DUF4238 system in the genome of *Enterobacter kobei* (GCF_008365235.1) is composed of 1 protein: DUF4238_Pers (WP_058689834.1).
+The Rst_DUF4238 system in *Novosphingobium pentaromativorans* (GCF_000767465.1, NZ_CP009291) is composed of 1 protein: DUF4238_Pers (WP_007011908.1)
## Distribution of the system among prokaryotes
-The Rst_DUF4238 system is present in a total of 34 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_DUF4238 is detected in 46 genomes (0.2 %).
-Among the 22k complete genomes of RefSeq, this system is present in 46 genomes (0.2 %).
+The system was detected in 37 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_DUF4238 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_DUF4238 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_gop_beta_cll.md b/content/3.defense-systems/rst_gop_beta_cll.md
index dba4c4522cabfd06633e896b0b7a2cd585617e93..e146cb8d102dbf5e533d69fd64c83fb00de4320b 100644
--- a/content/3.defense-systems/rst_gop_beta_cll.md
+++ b/content/3.defense-systems/rst_gop_beta_cll.md
@@ -15,23 +15,24 @@ tableColumns:
# Rst_gop_beta_cll
## Example of genomic structure
-The Rst_gop_beta_cll system is composed of 3 proteins: gop, beta and, cll.
+The Rst_gop_beta_cll is composed of 3 proteins: beta, cll and gop.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Rst_gop_beta_cll system in the genome of *Escherichia coli* (GCF_003018615.1) is composed of 3 proteins: cll (WP_001357997.1), beta (WP_001357996.1)and, gop (WP_000931915.1).
+The Rst_gop_beta_cll system in *Klebsiella grimontii* (GCF_019334465.1, NZ_CP079754) is composed of 3 proteins gop (WP_189095150.1) beta (WP_189095151.1) cll (WP_219192256.1)
## Distribution of the system among prokaryotes
-The Rst_gop_beta_cll system is present in a total of 14 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_gop_beta_cll is detected in 37 genomes (0.16 %).
-Among the 22k complete genomes of RefSeq, this system is present in 37 genomes (0.2 %).
+The system was detected in 15 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_gop_beta_cll system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_gop_beta_cll system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_helicaseduf2290.md b/content/3.defense-systems/rst_helicaseduf2290.md
index 68a8ea3719768e4950db3126ee06892876512814..cfed7c438fcdae199424c6e2887288737df22606 100644
--- a/content/3.defense-systems/rst_helicaseduf2290.md
+++ b/content/3.defense-systems/rst_helicaseduf2290.md
@@ -30,23 +30,24 @@ The molecular mechanism of the Rst_HelicaseDUF2290 is unkown.
## Example of genomic structure
-The Rst_HelicaseDUF2290 system is composed of 2 proteins: Helicase and, DUF2290.
+The Rst_HelicaseDUF2290 is composed of 2 proteins: Helicase and DUF2290.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Rst_HelicaseDUF2290 system in the genome of *Xylella fastidiosa* (GCF_021459885.1) is composed of 2 proteins: Helicase (WP_012338122.1)and, DUF2290 (WP_004084731.1).
+The Rst_HelicaseDUF2290 system in *Klebsiella quasipneumoniae* (GCF_003020825.1, NZ_CP023478) is composed of 2 proteins Helicase (WP_046623504.1) DUF2290_Pers (WP_046623503.1)
## Distribution of the system among prokaryotes
-The Rst_HelicaseDUF2290 system is present in a total of 124 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_HelicaseDUF2290 is detected in 207 genomes (0.91 %).
-Among the 22k complete genomes of RefSeq, this system is present in 211 genomes (0.9 %).
+The system was detected in 123 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_HelicaseDUF2290 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_HelicaseDUF2290 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_hydrolase-3tm.md b/content/3.defense-systems/rst_hydrolase-3tm.md
index 55fca2b1cc4917952c42cc099a977cb9be28078f..18fe66fe1b3269e17e37e2702e1d0d45422df51e 100644
--- a/content/3.defense-systems/rst_hydrolase-3tm.md
+++ b/content/3.defense-systems/rst_hydrolase-3tm.md
@@ -15,23 +15,24 @@ tableColumns:
# Rst_Hydrolase-3Tm
## Example of genomic structure
-The Rst_Hydrolase-3Tm system is composed of 2 proteins: Hydrolase and, Hydrolase-Tm.
+The Rst_Hydrolase-3Tm is composed of 2 proteins: Hydrolase and Hydrolase-Tm.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Rst_Hydrolase-Tm subsystem in the genome of *Escherichia coli* (GCF_004792495.1) is composed of 2 proteins: Hydrolase-Tm (WP_000998640.1)and, Hydrolase (WP_000754434.1).
+The Rst_Hydrolase-Tm system in *Pectobacterium versatile* (GCF_003031305.1, NZ_CP024842) is composed of 2 proteins Hydrolase (WP_107333258.1) Hydrolase-Tm (WP_107333259.1)
## Distribution of the system among prokaryotes
-The Rst_Hydrolase-3Tm system is present in a total of 34 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_Hydrolase-3Tm is detected in 42 genomes (0.18 %).
-Among the 22k complete genomes of RefSeq, this system is present in 42 genomes (0.2 %).
+The system was detected in 34 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_Hydrolase-3Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_Hydrolase-3Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_rt-nitrilase-tm.md b/content/3.defense-systems/rst_rt-nitrilase-tm.md
index e695d6d4948f53719795e1314711e8444ff9a51b..9e2d2085eed33e1b4916bdd59dcea843b64c9a61 100644
--- a/content/3.defense-systems/rst_rt-nitrilase-tm.md
+++ b/content/3.defense-systems/rst_rt-nitrilase-tm.md
@@ -15,23 +15,24 @@ tableColumns:
# Rst_RT-nitrilase-Tm
## Example of genomic structure
-The Rst_RT-nitrilase-Tm system is composed of 2 proteins: RT-Tm and, RT.
+The Rst_RT-nitrilase-Tm is composed of 2 proteins: RT and RT-Tm.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Rst_RT-Tm subsystem in the genome of *Morganella morganii* (GCF_900478755.1) is composed of 2 proteins: RT (WP_061057569.1)and, RT-Tm (WP_004234654.1).
+The Rst_RT-Tm system in *Morganella morganii* (GCF_900478755.1, NZ_LS483498) is composed of 2 proteins RT (WP_061057569.1) RT-Tm (WP_004234654.1)
## Distribution of the system among prokaryotes
-The Rst_RT-nitrilase-Tm system is present in a total of 5 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_RT-nitrilase-Tm is detected in 25 genomes (0.11 %).
-Among the 22k complete genomes of RefSeq, this system is present in 25 genomes (0.1 %).
+The system was detected in 5 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_RT-nitrilase-Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_RT-nitrilase-Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/rst_tir-nlr.md b/content/3.defense-systems/rst_tir-nlr.md
index 9b29b9e6dbe43b38000d3859b2fd9897a88ea958..b2ec23e6cce209e74e9af6437b6792d2b69700d5 100644
--- a/content/3.defense-systems/rst_tir-nlr.md
+++ b/content/3.defense-systems/rst_tir-nlr.md
@@ -15,23 +15,24 @@ tableColumns:
# Rst_TIR-NLR
## Example of genomic structure
-The Rst_TIR-NLR system is composed of one protein: TIR.
+The Rst_TIR-NLR is composed of 1 protein: TIR.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Rst_TIR-NLR system in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: TIR (WP_059327187.1).
+The Rst_TIR-NLR system in *Methylosinus sp. C49* (GCF_009936375.1, NZ_AP022332) is composed of 1 protein: TIR (WP_161914415.1)
## Distribution of the system among prokaryotes
-The Rst_TIR-NLR system is present in a total of 43 different species.
+Among the 22,803 complete genomes of RefSeq, the Rst_TIR-NLR is detected in 233 genomes (1.02 %).
-Among the 22k complete genomes of RefSeq, this system is present in 254 genomes (1.1 %).
+The system was detected in 42 different species.
{max-width=750px}
-*Proportion of genome encoding the Rst_TIR-NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Rst_TIR-NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/sanata.md b/content/3.defense-systems/sanata.md
index 5fc9a496e876a4981119ea0836cf04c513a8026c..82d1fe9fd8cf028e6b1478d66f85e3ce3f0d3056 100644
--- a/content/3.defense-systems/sanata.md
+++ b/content/3.defense-systems/sanata.md
@@ -29,23 +29,24 @@ It has been shown to function as a toxin-antitoxin (TA) system.
## Example of genomic structure
-The SanaTA system is composed of 2 proteins: SanaT and, SanaA.
+The SanaTA is composed of 2 proteins: SanaA and SanaT.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-SanaTA system in the genome of *Methylovorus glucosetrophus* (GCF_000023745.1) is composed of 2 proteins: SanaT (WP_015830669.1)and, SanaA (WP_015830670.1).
+The SanaTA system in *Euzebyella marina* (GCF_003687485.1, NZ_CP032050) is composed of 2 proteins SanaA (WP_121848345.1) SanaT (WP_121848346.1)
## Distribution of the system among prokaryotes
-The SanaTA system is present in a total of 504 different species.
+Among the 22,803 complete genomes of RefSeq, the SanaTA is detected in 992 genomes (4.35 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1071 genomes (4.7 %).
+The system was detected in 519 different species.
{max-width=750px}
-*Proportion of genome encoding the SanaTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the SanaTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/sefir.md b/content/3.defense-systems/sefir.md
index dfae1a2285aa0ecb1fcfb18c8607df785c9d0c44..11e0d0b995c30d85d4f7ddcdc907409b0caf6ec9 100644
--- a/content/3.defense-systems/sefir.md
+++ b/content/3.defense-systems/sefir.md
@@ -33,23 +33,24 @@ SEFIR was shown to protect against phage infection through an abortive infection
## Example of genomic structure
-The SEFIR system is composed of one protein: bSEFIR.
+The SEFIR is composed of 1 protein: bSEFIR.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-SEFIR system in the genome of *Lactiplantibacillus plantarum* (GCF_003020005.1) is composed of 1 protein: bSEFIR (WP_106904862.1).
+The SEFIR system in *Haliangium ochraceum* (GCF_000024805.1, NC_013440) is composed of 1 protein: bSEFIR (WP_012827923.1)
## Distribution of the system among prokaryotes
-The SEFIR system is present in a total of 226 different species.
+Among the 22,803 complete genomes of RefSeq, the SEFIR is detected in 358 genomes (1.57 %).
-Among the 22k complete genomes of RefSeq, this system is present in 377 genomes (1.7 %).
+The system was detected in 218 different species.
{max-width=750px}
-*Proportion of genome encoding the SEFIR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the SEFIR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/septu.md b/content/3.defense-systems/septu.md
index 170028d2f7d3812e2ecc4c7dc1d8321abf22a5b6..7277766d3231704c71062b47ae5cf9e91c2b973c 100644
--- a/content/3.defense-systems/septu.md
+++ b/content/3.defense-systems/septu.md
@@ -15,23 +15,24 @@ tableColumns:
# Septu
## Example of genomic structure
-The Septu system is composed of 2 proteins: PtuA and, PtuB.
+The Septu is composed of 2 proteins: PtuA and PtuB.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Septu system in the genome of *Arcobacter porcinus* (GCF_004299785.2) is composed of 2 proteins: PtuA (WP_066386194.1)and, PtuB_2 (WP_066386193.1).
+The Septu system in *Burkholderia pyrrocinia* (GCF_001028665.1, NZ_CP011503) is composed of 2 proteins PtuB (WP_148669058.1) PtuA (WP_082146056.1)
## Distribution of the system among prokaryotes
-The Septu system is present in a total of 911 different species.
+Among the 22,803 complete genomes of RefSeq, the Septu is detected in 2130 genomes (9.34 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2193 genomes (9.6 %).
+The system was detected in 1112 different species.
{max-width=750px}
-*Proportion of genome encoding the Septu system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Septu system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/shango.md b/content/3.defense-systems/shango.md
index 7d60ae03db1c2e28283f8332e0b69f49431bf5b8..a964d599afc149db8ef24d39c4b2912c6b53144c 100644
--- a/content/3.defense-systems/shango.md
+++ b/content/3.defense-systems/shango.md
@@ -30,23 +30,24 @@ The exact mechanism of action of the Shango defense has not yet been characteriz
## Example of genomic structure
-The Shango system is composed of 3 proteins: SngC, SngB and, SngA.
+The Shango is composed of 3 proteins: SngA, SngB and SngC.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Shango system in the genome of *Paenibacillus sp.* (GCF_022637315.1) is composed of 3 proteins: SngA (WP_241931534.1), SngB (WP_241931535.1)and, SngC (WP_241931536.1).
+The Shango system in *Anoxybacillus sp. B2M1* (GCF_001634265.1, NZ_CP015435) is composed of 3 proteins SngA (WP_044741979.1) SngB (WP_044741980.1) SngC (WP_044741981.1)
## Distribution of the system among prokaryotes
-The Shango system is present in a total of 385 different species.
+Among the 22,803 complete genomes of RefSeq, the Shango is detected in 1095 genomes (4.8 %).
-Among the 22k complete genomes of RefSeq, this system is present in 1112 genomes (4.9 %).
+The system was detected in 446 different species.
{max-width=750px}
-*Proportion of genome encoding the Shango system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Shango system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/shedu.md b/content/3.defense-systems/shedu.md
index b26a2440b82a1ff77bff1ca211842bae1dfc5a7f..12651abebc71fea0b019b326e82ed5f350af97bc 100644
--- a/content/3.defense-systems/shedu.md
+++ b/content/3.defense-systems/shedu.md
@@ -34,23 +34,24 @@ The nuclease activity and specific sensing of an E. coli Shedu was described in
## Example of genomic structure
-The Shedu system is composed of one protein: SduA.
+The Shedu is composed of 1 protein: SduA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Shedu system in the genome of *Mycolicibacterium psychrotolerans* (GCF_010729305.1) is composed of 1 protein: SduA (WP_246228780.1).
+The Shedu system in *Bradyrhizobium ottawaense* (GCF_002278135.2, NZ_CP029425) is composed of 1 protein: SduA (WP_225004618.1)
## Distribution of the system among prokaryotes
-The Shedu system is present in a total of 483 different species.
+Among the 22,803 complete genomes of RefSeq, the Shedu is detected in 876 genomes (3.84 %).
-Among the 22k complete genomes of RefSeq, this system is present in 899 genomes (3.9 %).
+The system was detected in 552 different species.
{max-width=750px}
-*Proportion of genome encoding the Shedu system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Shedu system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/shosta.md b/content/3.defense-systems/shosta.md
index 1e3c7bd80f2904466a33e7860663649a3efc021e..9ad8cab412ed6b9eb855bb917ce0d723c18ae646 100644
--- a/content/3.defense-systems/shosta.md
+++ b/content/3.defense-systems/shosta.md
@@ -15,23 +15,24 @@ tableColumns:
# ShosTA
## Example of genomic structure
-The ShosTA system is composed of 2 proteins: ShosA and, ShosT.
+The ShosTA is composed of 2 proteins: ShosA and ShosT.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-ShosTA system in the genome of *Escherichia coli* (GCF_011404895.1) is composed of 2 proteins: ShosA (WP_001567470.1)and, ShosT (WP_001567471.1).
+The ShosTA system in *Enterobacter cloacae* (GCF_009707405.1, NZ_CP046116) is composed of 2 proteins ShosT (WP_129253192.1) ShosA (WP_129253194.1)
## Distribution of the system among prokaryotes
-The ShosTA system is present in a total of 299 different species.
+Among the 22,803 complete genomes of RefSeq, the ShosTA is detected in 535 genomes (2.35 %).
-Among the 22k complete genomes of RefSeq, this system is present in 668 genomes (2.9 %).
+The system was detected in 240 different species.
{max-width=750px}
-*Proportion of genome encoding the ShosTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the ShosTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/sofic.md b/content/3.defense-systems/sofic.md
index 5023de02a4c5c049cef96377a5d6e602d3688ba7..94390623306350174ea59b12a307a7c24aa88a14 100644
--- a/content/3.defense-systems/sofic.md
+++ b/content/3.defense-systems/sofic.md
@@ -15,23 +15,24 @@ tableColumns:
# SoFIC
## Example of genomic structure
-The SoFIC system is composed of one protein: SoFic.
+The SoFIC is composed of 1 protein: SoFic.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-SoFic subsystem in the genome of *Fusobacterium nucleatum* (GCF_019552125.1) is composed of 1 protein: SoFic (WP_220308819.1).
+The SoFic system in *Morococcus cerebrosus* (GCF_022749515.1, NZ_CP094242) is composed of 1 protein: SoFic (WP_242883646.1)
## Distribution of the system among prokaryotes
-The SoFIC system is present in a total of 1014 different species.
+Among the 22,803 complete genomes of RefSeq, the SoFIC is detected in 2266 genomes (9.94 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2265 genomes (9.9 %).
+The system was detected in 1160 different species.
{max-width=750px}
-*Proportion of genome encoding the SoFIC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the SoFIC system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/spbk.md b/content/3.defense-systems/spbk.md
index 9b9195bc6a53025a09a7ff0a0ee36efb7761516f..4f4f20b821dfc9b09ff9844b7181d7e859c1a218 100644
--- a/content/3.defense-systems/spbk.md
+++ b/content/3.defense-systems/spbk.md
@@ -15,23 +15,24 @@ tableColumns:
# SpbK
## Example of genomic structure
-The SpbK system is composed of one protein: SpbK.
+The SpbK is composed of 1 protein: SpbK.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-SpbK system in the genome of *Clostridium beijerinckii* (GCF_900010805.1) is composed of 1 protein: SpbK (WP_077841417.1).
+The SpbK system in *Hymenobacter busanensis* (GCF_009906935.1, NZ_CP047647) is composed of 1 protein: SpbK (WP_151080464.1)
## Distribution of the system among prokaryotes
-The SpbK system is present in a total of 88 different species.
+Among the 22,803 complete genomes of RefSeq, the SpbK is detected in 214 genomes (0.94 %).
-Among the 22k complete genomes of RefSeq, this system is present in 219 genomes (1.0 %).
+The system was detected in 90 different species.
{max-width=750px}
-*Proportion of genome encoding the SpbK system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the SpbK system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/sspbcde.md b/content/3.defense-systems/sspbcde.md
index 8ca765c774d86761c9d09b3aa071485bb4de0602..fb3fac3e1844a2eea7ee5f6013169e6567c7b926 100644
--- a/content/3.defense-systems/sspbcde.md
+++ b/content/3.defense-systems/sspbcde.md
@@ -15,23 +15,24 @@ tableColumns:
# SspBCDE
## Example of genomic structure
-The SspBCDE system is composed of 7 proteins: SspB, SspC, SspD, SspE, SspH, SspG and, SspF.
+The SspBCDE is composed of 7 proteins: SspB, SspC, SspD, SspE, SspF, SspG and SspH.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-SspBCDE system in the genome of *Bordetella hinzii* (GCF_006770405.1) is composed of 7 proteins: SspF (WP_221886990.1), SspG (WP_142096192.1), SspH (WP_142096195.1), SspE (WP_142096198.1), SspD (WP_142096201.1), SspC (WP_142096204.1)and, SspB (WP_142096207.1).
+The SspBCDE system in *Vibrio fluvialis* (GCF_018140575.1, NZ_CP073273) is composed of 6 proteins SspB (WP_050492436.1) SspC (WP_212571168.1) SspD (WP_032481030.1) SspF (WP_212571169.1) SspG (WP_212571170.1) SspH (WP_212571171.1)
## Distribution of the system among prokaryotes
-The SspBCDE system is present in a total of 276 different species.
+Among the 22,803 complete genomes of RefSeq, the SspBCDE is detected in 578 genomes (2.53 %).
-Among the 22k complete genomes of RefSeq, this system is present in 579 genomes (2.5 %).
+The system was detected in 299 different species.
{max-width=750px}
-*Proportion of genome encoding the SspBCDE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the SspBCDE system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/stk2.md b/content/3.defense-systems/stk2.md
index f2c36e4089ba2c9e081da942575d164e0fa66245..6a0050272c85eeac4488385b861f037b716e7066 100644
--- a/content/3.defense-systems/stk2.md
+++ b/content/3.defense-systems/stk2.md
@@ -24,23 +24,24 @@ Stk2 is an Abortive infection system, which triggers cell death upon phage infec
## Example of genomic structure
-The Stk2 system is composed of one protein: Stk2.
+The Stk2 is composed of 1 protein: Stk2.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Stk2 system in the genome of *Staphylococcus aureus* (GCF_009739755.1) is composed of 1 protein: Stk2 (WP_001001347.1).
+The Stk2 system in *Bacillus rugosus* (GCF_023238245.1, NZ_CP096590) is composed of 1 protein: Stk2 (WP_248602500.1)
## Distribution of the system among prokaryotes
-The Stk2 system is present in a total of 29 different species.
+Among the 22,803 complete genomes of RefSeq, the Stk2 is detected in 140 genomes (0.61 %).
-Among the 22k complete genomes of RefSeq, this system is present in 141 genomes (0.6 %).
+The system was detected in 29 different species.
{max-width=750px}
-*Proportion of genome encoding the Stk2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Stk2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/thoeris.md b/content/3.defense-systems/thoeris.md
index 8efc711465b09e28993503d0994483eed18157ae..3fa07ce185f39bf236784bd1e1a6317017800167 100644
--- a/content/3.defense-systems/thoeris.md
+++ b/content/3.defense-systems/thoeris.md
@@ -15,27 +15,24 @@ tableColumns:
# Thoeris
## Example of genomic structure
-The Thoeris system have been describe in a total of 2 subsystems.
+The Thoeris is composed of 2 proteins: ThsA and ThsB.
-Here is some example found in the RefSeq database:
+Here is an example found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Thoeris_I subsystem in the genome of *Bacillus thuringiensis* (GCF_020809205.1) is composed of 2 proteins: ThsA_new_grand (WP_021728720.1)and, ThsB_Global (WP_021728719.1).
-
-{max-width=750px}
-
-Thoeris_II subsystem in the genome of *Acinetobacter baumannii* (GCF_014672775.1) is composed of 2 proteins: ThsB_Global (WP_000120680.1)and, ThsA_new_petit (WP_005134880.1).
+The Thoeris_I system in *Sneathia vaginalis* (GCF_000973085.1, NZ_CP011280) is composed of 4 proteins ThsA_new_grand (WP_046328157.1) ThsB_Global (WP_046328158.1) ThsB_Global (WP_052727636.1) ThsB_Global (WP_046328159.1)
## Distribution of the system among prokaryotes
-The Thoeris system is present in a total of 286 different species.
+Among the 22,803 complete genomes of RefSeq, the Thoeris is detected in 777 genomes (3.41 %).
-Among the 22k complete genomes of RefSeq, this system is present in 812 genomes (3.6 %).
+The system was detected in 298 different species.
{max-width=750px}
-*Proportion of genome encoding the Thoeris system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Thoeris system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/tiamat.md b/content/3.defense-systems/tiamat.md
index 006b2adbe0bfec799be6c3c2fd79933c2ccb2249..a7b31dcdb492b5dbf68e845e54bc5d84d1952efe 100644
--- a/content/3.defense-systems/tiamat.md
+++ b/content/3.defense-systems/tiamat.md
@@ -29,23 +29,24 @@ To our knowledge the molecular mechanism is unknown. Please update.
## Example of genomic structure
-The Tiamat system is composed of one protein: TmtA_2599863134.
+The Tiamat is composed of 1 protein: TmtA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Tiamat system in the genome of *Pseudomonas aeruginosa* (GCF_022638055.1) is composed of 1 protein: TmtA_2731770353 (WP_023121076.1).
+The Tiamat system in *Undibacterium parvum* (GCF_003955735.1, NZ_CP034464) is composed of 1 protein: TmtA (WP_126126601.1)
## Distribution of the system among prokaryotes
-The Tiamat system is present in a total of 228 different species.
+Among the 22,803 complete genomes of RefSeq, the Tiamat is detected in 326 genomes (1.43 %).
-Among the 22k complete genomes of RefSeq, this system is present in 342 genomes (1.5 %).
+The system was detected in 251 different species.
{max-width=750px}
-*Proportion of genome encoding the Tiamat system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Tiamat system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/uzume.md b/content/3.defense-systems/uzume.md
index 8bdb173cf300ff9ef948cb66179d8c28108a110a..29a9f1cc94750221e3449c9fdafdfdef22c63c71 100644
--- a/content/3.defense-systems/uzume.md
+++ b/content/3.defense-systems/uzume.md
@@ -14,23 +14,24 @@ tableColumns:
# Uzume
## Example of genomic structure
-The Uzume system is composed of one protein: UzuA_2660320622.
+The Uzume is composed of 1 protein: UzuA.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Uzume system in the genome of *Nocardioides euryhalodurans* (GCF_004564375.1) is composed of 1 protein: UzuA (WP_135074908.1).
+The Uzume system in *Priestia megaterium* (GCF_013146705.1, NZ_CP045273) is composed of 1 protein: UzuA (WP_171777971.1)
## Distribution of the system among prokaryotes
-The Uzume system is present in a total of 76 different species.
+Among the 22,803 complete genomes of RefSeq, the Uzume is detected in 125 genomes (0.55 %).
-Among the 22k complete genomes of RefSeq, this system is present in 125 genomes (0.5 %).
+The system was detected in 87 different species.
{max-width=750px}
-*Proportion of genome encoding the Uzume system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Uzume system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/viperin.md b/content/3.defense-systems/viperin.md
index a371b6e419596ef51214596a6f3ba9ff70626bbe..a5965d930cb54da720544cf0bd889aa356aecc79 100644
--- a/content/3.defense-systems/viperin.md
+++ b/content/3.defense-systems/viperin.md
@@ -32,23 +32,24 @@ Compared to the initial ribonucleotide triphosphate, the modified ddh-nucleotide
## Example of genomic structure
-The Viperin system is composed of one protein: pVip.
+The Viperin is composed of 1 protein: pVip.
-Here is an example found in the RefSeq database:
+Here is an example found in the RefSeq database:
{max-width=750px}
-Viperin system in the genome of *Moritella yayanosii* is composed of 1 protein: pVip (WP_112711942.1).
+The Viperin system in *Vibrio sp. SCSIO 43009* (GCF_023716525.1, NZ_CP071842) is composed of 1 protein: pVip (WP_182016311.1)
## Distribution of the system among prokaryotes
-The Viperin system is present in a total of 85 different species.
+Among the 22,803 complete genomes of RefSeq, the Viperin is detected in 118 genomes (0.52 %).
-Among the 22k complete genomes of RefSeq, this system is present in 118 genomes (0.5 %).
+The system was detected in 95 different species.
{max-width=750px}
-*Proportion of genome encoding the Viperin system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+Proportion of genome encoding the Viperin system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/wadjet.md b/content/3.defense-systems/wadjet.md
index e0a469df4f5957567f4551d6ca1f90b3cd65d162..5fe9639caaf036c2a3266edfed060d066f979e4e 100644
--- a/content/3.defense-systems/wadjet.md
+++ b/content/3.defense-systems/wadjet.md
@@ -15,31 +15,32 @@ tableColumns:
# Wadjet
## Example of genomic structure
-The Wadjet system have been describe in a total of 4 subsystems.
+A total of 3 subsystems have been described for the Wadjet system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Wadjet_I subsystem in the genome of *Bifidobacterium pseudocatenulatum* (GCF_021484885.1) is composed of 4 proteins: JetA_I (WP_195524168.1), JetB_I (WP_195523897.1), JetC_I (WP_195523898.1)and, JetD_I (WP_229067172.1).
+The Wadjet_I system in *Corynebacterium humireducens* (GCF_000819445.1, NZ_CP005286) is composed of 4 proteins JetA_I (WP_040084540.1) JetB_I (WP_052437638.1) JetC_I (WP_040084541.1) JetD_I (WP_040084542.1)
-{max-width=750px}
+{max-width=750px}
-Wadjet_II subsystem in the genome of *Streptomyces sp.* (GCF_023273835.1) is composed of 4 proteins: JetD_II (WP_248777007.1), JetC_II (WP_248777008.1), JetB_II (WP_248777009.1)and, JetA_II (WP_248777010.1).
+The Wadjet_II system in *Streptomyces paludis* (GCF_003344965.1, NZ_CP031194) is composed of 4 proteins JetA_II (WP_114665121.1) JetB_II (WP_114660010.1) JetC_II (WP_114660011.1) JetD_II (WP_228447139.1)
-{max-width=750px}
+{max-width=750px}
-Wadjet_III subsystem in the genome of *Caldibacillus thermoamylovorans* (GCF_003096215.1) is composed of 4 proteins: JetD_III (WP_108897743.1), JetA_III (WP_108897744.1), JetB_III (WP_034768879.1)and, JetC_III (WP_108897745.1).
+The Wadjet_III system in *Cytobacillus spongiae* (GCF_021390075.1, NZ_CP089997) is composed of 4 proteins JetD_III (WP_233811322.1) JetA_III (WP_233811323.1) JetB_III (WP_233811324.1) JetC_III (WP_233811325.1)
## Distribution of the system among prokaryotes
-The Wadjet system is present in a total of 1151 different species.
+Among the 22,803 complete genomes of RefSeq, the Wadjet is detected in 2351 genomes (10.31 %).
-Among the 22k complete genomes of RefSeq, this system is present in 2380 genomes (10.4 %).
+The system was detected in 1467 different species.
{max-width=750px}
-*Proportion of genome encoding the Wadjet system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Wadjet system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
diff --git a/content/3.defense-systems/zorya.md b/content/3.defense-systems/zorya.md
index c83b7c2661533340e08e47da0add2392d499a2f9..c1cb4ae4ea5b2b6b25ee00da43f4b52c223fe522 100644
--- a/content/3.defense-systems/zorya.md
+++ b/content/3.defense-systems/zorya.md
@@ -15,27 +15,28 @@ tableColumns:
# Zorya
## Example of genomic structure
-The Zorya system have been describe in a total of 2 subsystems.
+A total of 2 subsystems have been described for the Zorya system.
-Here is some example found in the RefSeq database:
+Here is some examples found in the RefSeq database:
-{max-width=750px}
+{max-width=750px}
-Zorya_TypeI subsystem in the genome of *Pseudomonas aeruginosa* (GCF_002085605.1) is composed of 4 proteins: ZorD (WP_015649020.1), ZorC (WP_015649021.1), ZorB (WP_015649022.1)and, ZorA (WP_025297974.1).
+The Zorya_TypeI system in *Erwinia pyrifoliae* (GCF_000027265.1, NC_012214) is composed of 4 proteins ZorA (WP_012666948.1) ZorB (WP_012666949.1) ZorC (WP_012666950.1) ZorD (WP_012666951.1)
-{max-width=750px}
+{max-width=750px}
-Zorya_TypeII subsystem in the genome of *Legionella longbeachae* (GCF_011465255.1) is composed of 3 proteins: ZorA2 (WP_050777601.1), ZorB (WP_003632756.1)and, ZorE (WP_050777600.1).
+The Zorya_TypeII system in *Pectobacterium aroidearum* (GCF_015689195.1, NZ_CP065044) is composed of 3 proteins ZorA2 (WP_205947278.1) ZorB (WP_205947279.1) ZorE (WP_205947280.1)
## Distribution of the system among prokaryotes
-The Zorya system is present in a total of 304 different species.
+Among the 22,803 complete genomes of RefSeq, the Zorya is detected in 803 genomes (3.52 %).
-Among the 22k complete genomes of RefSeq, this system is present in 840 genomes (3.7 %).
+The system was detected in 310 different species.
{max-width=750px}
-*Proportion of genome encoding the Zorya system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+Proportion of genome encoding the Zorya system for the 14 phyla with more than 50 genomes in the RefSeq database.
+
## Structure
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diff --git a/public/abij/AbiJ.svg b/public/abij/AbiJ.svg
index 528d2beb1e7d474b1eed9be4f02d99bd3735f329..957069311c66780171d8354cb4f191f26b5684f9 100644
--- a/public/abij/AbiJ.svg
+++ b/public/abij/AbiJ.svg
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diff --git a/public/abik/AbiK.svg b/public/abik/AbiK.svg
index 3a03eed228e9266430b270deae43b450346da407..755503811adfbf09a5ec1c566b563f29ab4c5af7 100644
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+ <!-- Pseudomonadota -->
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+ <!-- Verrucomicrobiota -->
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+ <!-- Fusobacteriota -->
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+ <!-- Planctomycetota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Spirochaetota -->
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+ <!-- Verrucomicrobiota -->
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diff --git a/public/abir/AbiR.svg b/public/abir/AbiR.svg
index 381820c304e1f71e7ae109e09eee9eb5f4e1cdbc..dd2c2902919510e06859e1117649de4e3f383094 100644
--- a/public/abir/AbiR.svg
+++ b/public/abir/AbiR.svg
@@ -1,16 +1,16 @@
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+ <!-- Verrucomicrobiota -->
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+ <!-- Euryarchaeota -->
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+ <!-- Fusobacteriota -->
+ <g transform="translate(279.404848 305.611875)rotate(-90)scale(0.1 -0.1)">
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+ <!-- Planctomycetota -->
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+ <!-- Spirochaetota -->
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+ <!-- Thermoproteota -->
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+ <!-- Verrucomicrobiota -->
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+ <!-- Planctomycetota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Verrucomicrobiota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Verrucomicrobiota -->
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index 27103df46c83152c919c0c472557be32783a8c27..7f2c304e493b016e40f4d6c64769e4d6f1b024d2 100644
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+ <g id="text_10">
+ <!-- Mycoplasmatota -->
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+ <!-- Planctomycetota -->
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+ <g id="text_12">
+ <!-- Pseudomonadota -->
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+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(385.321753 301.324375)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
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+ <!-- Thermoproteota -->
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+ <g id="text_10">
+ <!-- Mycoplasmatota -->
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+ <defs>
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+ <g id="text_11">
+ <!-- Planctomycetota -->
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+ <g id="text_12">
+ <!-- Pseudomonadota -->
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+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(391.684253 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
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+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(443.053643 312.6275)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
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+ <!-- 0.05 -->
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+ <g id="text_4">
+ <!-- Campylobacterota -->
+ <g transform="translate(160.521997 323.757187)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(186.206692 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(211.891387 314.230625)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-79" x="69.824219"/>
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+ <use xlink:href="#DejaVuSans-6f" x="664.208984"/>
+ <use xlink:href="#DejaVuSans-74" x="725.390625"/>
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+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(237.576082 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-44" d="M 1259 4147
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+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(263.260777 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(288.945473 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(314.630168 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(340.314863 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-50"/>
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+ <g id="text_12">
+ <!-- Pseudomonadota -->
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+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(391.684253 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(417.368948 357.604062)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_2">
+ <!-- Bacillota -->
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+ <g id="text_3">
+ <!-- Bacteroidota -->
+ <g transform="translate(125.296677 295.499375)rotate(-90)scale(0.1 -0.1)">
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+ <!-- Campylobacterota -->
+ <g transform="translate(150.981372 323.757187)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
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+ <defs>
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+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(202.350762 314.230625)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(228.035457 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(253.720152 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <!-- Fusobacteriota -->
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+ <!-- Mycoplasmatota -->
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+ <g>
+ <use xlink:href="#mf30fa76332" x="173.906692" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(176.666067 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-68" d="M 3513 2113
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+ </defs>
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-68" x="69.824219"/>
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+ </g>
+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(202.350762 314.230625)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-79" x="69.824219"/>
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+ <use xlink:href="#DejaVuSans-74" x="494.580078"/>
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+ <use xlink:href="#DejaVuSans-72" x="595.3125"/>
+ <use xlink:href="#DejaVuSans-69" x="636.425781"/>
+ <use xlink:href="#DejaVuSans-6f" x="664.208984"/>
+ <use xlink:href="#DejaVuSans-74" x="725.390625"/>
+ <use xlink:href="#DejaVuSans-61" x="764.599609"/>
+ </g>
+ </g>
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+ <g>
+ <use xlink:href="#mf30fa76332" x="225.276082" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(228.035457 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-44" d="M 1259 4147
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+ </defs>
+ <use xlink:href="#DejaVuSans-44"/>
+ <use xlink:href="#DejaVuSans-65" x="77.001953"/>
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+ <use xlink:href="#DejaVuSans-6f" x="516.992188"/>
+ <use xlink:href="#DejaVuSans-74" x="578.173828"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_8">
+ <g id="line2d_8">
+ <g>
+ <use xlink:href="#mf30fa76332" x="250.960777" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(253.720152 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-45" d="M 628 4666
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+ <use xlink:href="#DejaVuSans-45"/>
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+ <g>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(279.404848 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-46"/>
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+ </g>
+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(305.089543 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-4d" d="M 628 4666
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+ <use xlink:href="#DejaVuSans-4d"/>
+ <use xlink:href="#DejaVuSans-79" x="86.279297"/>
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+ <use xlink:href="#DejaVuSans-6f" x="200.439453"/>
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(330.774238 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </defs>
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-6c" x="60.302734"/>
+ <use xlink:href="#DejaVuSans-61" x="88.085938"/>
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+ <g id="xtick_12">
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+ <g>
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+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(356.458933 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
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+ <use xlink:href="#DejaVuSans-6f" x="457.625"/>
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+ <use xlink:href="#DejaVuSans-61" x="582.185547"/>
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+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
+ <use xlink:href="#DejaVuSans-61" x="807.332031"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
+ <g id="line2d_13">
+ <g>
+ <use xlink:href="#mf30fa76332" x="379.384253" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(382.143628 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+ <use xlink:href="#DejaVuSans-53"/>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(407.828323 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-54"/>
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+ </g>
+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(433.513018 312.6275)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-54"/>
+ <use xlink:href="#DejaVuSans-68" x="61.083984"/>
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index 81e5f567e12245d844b020c45866d0abb1191453..75533a4139dc2d0e2db87c38a0f33e542730333e 100644
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+ <!-- Verrucomicrobiota -->
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+ <!-- Chlamydiota -->
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+ <use xlink:href="#DejaVuSans-61" x="445.357422"/>
+ <use xlink:href="#DejaVuSans-65" x="506.636719"/>
+ <use xlink:href="#DejaVuSans-6f" x="568.160156"/>
+ <use xlink:href="#DejaVuSans-74" x="629.341797"/>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(282.582973 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
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+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(308.267668 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(333.952363 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-50" d="M 1259 4147
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+ </g>
+ </g>
+ <g id="xtick_12">
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+ </g>
+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(359.637058 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
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+ <use xlink:href="#DejaVuSans-64" x="643.464844"/>
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+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
+ <use xlink:href="#DejaVuSans-61" x="807.332031"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
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+ <g>
+ <use xlink:href="#mb2f1f94720" x="382.562378" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(385.321753 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+ <use xlink:href="#DejaVuSans-6f" x="535.152344"/>
+ <use xlink:href="#DejaVuSans-74" x="596.333984"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_14">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(411.006448 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </defs>
+ <use xlink:href="#DejaVuSans-54"/>
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+ <g id="xtick_15">
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+ </g>
+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(436.691143 312.6275)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-54"/>
+ <use xlink:href="#DejaVuSans-68" x="61.083984"/>
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+ <use xlink:href="#DejaVuSans-65" x="586.673828"/>
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+ </g>
+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
+ <g transform="translate(462.375838 323.175937)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="matplotlib.axis_2">
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+ <!-- 0.0 -->
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+ <defs>
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+ <!-- 0.5 -->
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+ <defs>
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+ <!-- 1.0 -->
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+ <!-- Pseudomonadota -->
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+ <!-- Verrucomicrobiota -->
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index 61f0dc4af78ddb4e76d1062f058f24e7b2f379e4..8abccb75f7ed19878a789fcf7a5b52ac400d1e7e 100644
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+ <use xlink:href="#DejaVuSans-6f" x="516.992188"/>
+ <use xlink:href="#DejaVuSans-74" x="578.173828"/>
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+ <g id="xtick_8">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(263.260777 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(288.945473 305.611875)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(314.630168 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-4d" d="M 628 4666
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(340.314863 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-50" d="M 1259 4147
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+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-6c" x="60.302734"/>
+ <use xlink:href="#DejaVuSans-61" x="88.085938"/>
+ <use xlink:href="#DejaVuSans-6e" x="149.365234"/>
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+ </g>
+ </g>
+ <g id="xtick_12">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(365.999558 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
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+ <use xlink:href="#DejaVuSans-6e" x="518.806641"/>
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+ <use xlink:href="#DejaVuSans-64" x="643.464844"/>
+ <use xlink:href="#DejaVuSans-6f" x="706.941406"/>
+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
+ <use xlink:href="#DejaVuSans-61" x="807.332031"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
+ <g id="line2d_13">
+ <g>
+ <use xlink:href="#mc25859059a" x="388.924878" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(391.684253 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+ </defs>
+ <use xlink:href="#DejaVuSans-53"/>
+ <use xlink:href="#DejaVuSans-70" x="63.476562"/>
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+ <use xlink:href="#DejaVuSans-6f" x="193.599609"/>
+ <use xlink:href="#DejaVuSans-63" x="254.78125"/>
+ <use xlink:href="#DejaVuSans-68" x="309.761719"/>
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+ <use xlink:href="#DejaVuSans-6f" x="535.152344"/>
+ <use xlink:href="#DejaVuSans-74" x="596.333984"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_14">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(417.368948 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-54"/>
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+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(443.053643 312.6275)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
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+ <!-- 0.25 -->
+ <g transform="translate(20.878125 200.482647)scale(0.1 -0.1)">
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+ <!-- Chlamydiota -->
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+ <use xlink:href="#DejaVuSans-65" x="506.636719"/>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(282.582973 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(308.267668 314.224375)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(333.952363 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="xtick_12">
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+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(359.637058 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
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+ </g>
+ </g>
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+ <g>
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+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(385.321753 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
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+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(436.691143 312.6275)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
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+ <!-- Euryarchaeota -->
+ <g transform="translate(263.260777 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-45" d="M 628 4666
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+ </defs>
+ <use xlink:href="#DejaVuSans-45"/>
+ <use xlink:href="#DejaVuSans-75" x="63.183594"/>
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+ <use xlink:href="#DejaVuSans-63" x="326.998047"/>
+ <use xlink:href="#DejaVuSans-68" x="381.978516"/>
+ <use xlink:href="#DejaVuSans-61" x="445.357422"/>
+ <use xlink:href="#DejaVuSans-65" x="506.636719"/>
+ <use xlink:href="#DejaVuSans-6f" x="568.160156"/>
+ <use xlink:href="#DejaVuSans-74" x="629.341797"/>
+ <use xlink:href="#DejaVuSans-61" x="668.550781"/>
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+ </g>
+ </g>
+ <g id="xtick_9">
+ <g id="line2d_9">
+ <g>
+ <use xlink:href="#m6d3283e5df" x="286.186098" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(288.945473 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-46"/>
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+ <use xlink:href="#DejaVuSans-69" x="550.261719"/>
+ <use xlink:href="#DejaVuSans-6f" x="578.044922"/>
+ <use xlink:href="#DejaVuSans-74" x="639.226562"/>
+ <use xlink:href="#DejaVuSans-61" x="678.435547"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_10">
+ <g id="line2d_10">
+ <g>
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+ </g>
+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(314.630168 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-4d" d="M 628 4666
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+ <use xlink:href="#DejaVuSans-4d"/>
+ <use xlink:href="#DejaVuSans-79" x="86.279297"/>
+ <use xlink:href="#DejaVuSans-63" x="145.458984"/>
+ <use xlink:href="#DejaVuSans-6f" x="200.439453"/>
+ <use xlink:href="#DejaVuSans-70" x="261.621094"/>
+ <use xlink:href="#DejaVuSans-6c" x="325.097656"/>
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+ </g>
+ </g>
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+ <g>
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(340.314863 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-50" d="M 1259 4147
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+ </defs>
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-6c" x="60.302734"/>
+ <use xlink:href="#DejaVuSans-61" x="88.085938"/>
+ <use xlink:href="#DejaVuSans-6e" x="149.365234"/>
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+ <use xlink:href="#DejaVuSans-6f" x="306.933594"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_12">
+ <g id="line2d_12">
+ <g>
+ <use xlink:href="#m6d3283e5df" x="363.240183" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(365.999558 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
+ <use xlink:href="#DejaVuSans-65" x="110.652344"/>
+ <use xlink:href="#DejaVuSans-75" x="172.175781"/>
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+ <use xlink:href="#DejaVuSans-6d" x="360.212891"/>
+ <use xlink:href="#DejaVuSans-6f" x="457.625"/>
+ <use xlink:href="#DejaVuSans-6e" x="518.806641"/>
+ <use xlink:href="#DejaVuSans-61" x="582.185547"/>
+ <use xlink:href="#DejaVuSans-64" x="643.464844"/>
+ <use xlink:href="#DejaVuSans-6f" x="706.941406"/>
+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
+ <use xlink:href="#DejaVuSans-61" x="807.332031"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
+ <g id="line2d_13">
+ <g>
+ <use xlink:href="#m6d3283e5df" x="388.924878" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(391.684253 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+" transform="scale(0.015625)"/>
+ </defs>
+ <use xlink:href="#DejaVuSans-53"/>
+ <use xlink:href="#DejaVuSans-70" x="63.476562"/>
+ <use xlink:href="#DejaVuSans-69" x="126.953125"/>
+ <use xlink:href="#DejaVuSans-72" x="154.736328"/>
+ <use xlink:href="#DejaVuSans-6f" x="193.599609"/>
+ <use xlink:href="#DejaVuSans-63" x="254.78125"/>
+ <use xlink:href="#DejaVuSans-68" x="309.761719"/>
+ <use xlink:href="#DejaVuSans-61" x="373.140625"/>
+ <use xlink:href="#DejaVuSans-65" x="434.419922"/>
+ <use xlink:href="#DejaVuSans-74" x="495.943359"/>
+ <use xlink:href="#DejaVuSans-6f" x="535.152344"/>
+ <use xlink:href="#DejaVuSans-74" x="596.333984"/>
+ <use xlink:href="#DejaVuSans-61" x="635.542969"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_14">
+ <g id="line2d_14">
+ <g>
+ <use xlink:href="#m6d3283e5df" x="414.609573" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(417.368948 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-54" d="M -19 4666
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+ </defs>
+ <use xlink:href="#DejaVuSans-54"/>
+ <use xlink:href="#DejaVuSans-68" x="61.083984"/>
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+ <use xlink:href="#DejaVuSans-6c" x="624.421875"/>
+ <use xlink:href="#DejaVuSans-66" x="652.205078"/>
+ <use xlink:href="#DejaVuSans-6f" x="687.410156"/>
+ <use xlink:href="#DejaVuSans-62" x="748.591797"/>
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+ <use xlink:href="#DejaVuSans-69" x="1070.173828"/>
+ <use xlink:href="#DejaVuSans-6f" x="1097.957031"/>
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+ <g id="xtick_15">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(443.053643 312.6275)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-54"/>
+ <use xlink:href="#DejaVuSans-68" x="61.083984"/>
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+ <use xlink:href="#DejaVuSans-72" x="185.986328"/>
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+ <use xlink:href="#DejaVuSans-6f" x="648.197266"/>
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+ </g>
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+ <g id="xtick_16">
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+ </g>
+ </g>
+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
+ <g transform="translate(468.738338 323.175937)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-56"/>
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+ <g id="matplotlib.axis_2">
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+ <g>
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+ <g id="text_17">
+ <!-- 0.00 -->
+ <g transform="translate(20.878125 228.439219)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_18">
+ <!-- 0.01 -->
+ <g transform="translate(20.878125 186.690739)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_19">
+ <!-- 0.02 -->
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+ <!-- Bacteroidota -->
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+ <!-- Chlamydiota -->
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+ <!-- Deinococcota -->
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+ <use xlink:href="#DejaVuSans-79" x="167.675781"/>
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+ <use xlink:href="#DejaVuSans-72" x="288.134766"/>
+ <use xlink:href="#DejaVuSans-63" x="326.998047"/>
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+ <use xlink:href="#DejaVuSans-61" x="445.357422"/>
+ <use xlink:href="#DejaVuSans-65" x="506.636719"/>
+ <use xlink:href="#DejaVuSans-6f" x="568.160156"/>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(288.945473 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
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+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(314.630168 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-4d" d="M 628 4666
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(340.314863 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-50" d="M 1259 4147
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+ <use xlink:href="#DejaVuSans-6c" x="60.302734"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_12">
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+ </g>
+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(365.999558 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
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+ <use xlink:href="#DejaVuSans-64" x="643.464844"/>
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+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
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+ <g>
+ <use xlink:href="#m49f9ecab3c" x="388.924878" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(391.684253 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+ <use xlink:href="#DejaVuSans-53"/>
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+ <use xlink:href="#DejaVuSans-74" x="495.943359"/>
+ <use xlink:href="#DejaVuSans-6f" x="535.152344"/>
+ <use xlink:href="#DejaVuSans-74" x="596.333984"/>
+ <use xlink:href="#DejaVuSans-61" x="635.542969"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_14">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(417.368948 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </defs>
+ <use xlink:href="#DejaVuSans-54"/>
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+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(443.053643 312.6275)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-54"/>
+ <use xlink:href="#DejaVuSans-68" x="61.083984"/>
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+ </g>
+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
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+ <defs>
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+ <!-- 0.00 -->
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+ <!-- 0.05 -->
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+ <!-- Chlamydiota -->
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+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(279.404848 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(305.089543 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(330.774238 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(356.458933 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
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+ </g>
+ </g>
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+ <g>
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+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(382.143628 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(407.828323 357.604062)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(433.513018 312.6275)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
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+ <!-- 0 -->
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+ <!-- 2 -->
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diff --git a/public/gabija/Gabija.svg b/public/gabija/Gabija.svg
index 210b6d984a50e3be638e4904a8787bab2feece09..8ad8ac1e60175afa7da2723ef8224eb8d39325f9 100644
--- a/public/gabija/Gabija.svg
+++ b/public/gabija/Gabija.svg
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+ <!-- Planctomycetota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Verrucomicrobiota -->
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index 6ea501b6523b70a66262c7443c709d8395d4cbba..09a4181e35d58e1b7d2b151e9a99eca143e8c83c 100644
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index 59d01c2455bb7a2b2ecb879d2d53efa744e56f6a..ff81a04a9ef26d65c0a8722c981652bc7a2d6ed0 100644
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+ <!-- Mycoplasmatota -->
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+ <!-- Planctomycetota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Verrucomicrobiota -->
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index dbffd9b9ce550a39be10a54652bdb5574443a7e4..56ebbf46c015c3e1b4064324876e63452cdac342 100644
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+ <!-- Bacillota -->
+ <g transform="translate(102.790107 274.629062)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_3">
+ <!-- Bacteroidota -->
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+ <!-- Campylobacterota -->
+ <g transform="translate(154.159497 323.757187)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(179.844192 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(205.528887 314.230625)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(231.213582 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(256.898277 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(282.582973 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_10">
+ <!-- Mycoplasmatota -->
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+ <g id="text_11">
+ <!-- Planctomycetota -->
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+ </g>
+ <g id="text_3">
+ <!-- Bacteroidota -->
+ <g transform="translate(118.934177 295.499375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <!-- Campylobacterota -->
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+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(170.303567 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(195.988262 314.230625)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(221.672957 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(247.357652 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(273.042348 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(298.727043 314.224375)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_11">
+ <!-- Planctomycetota -->
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+ <g id="text_12">
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+ </g>
+ <g id="text_3">
+ <!-- Bacteroidota -->
+ <g transform="translate(134.837302 295.499375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <!-- Campylobacterota -->
+ <g transform="translate(160.521997 323.757187)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(186.206692 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(211.891387 314.230625)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-79" x="69.824219"/>
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+ <use xlink:href="#DejaVuSans-6f" x="664.208984"/>
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+ </g>
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+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(237.576082 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-44" d="M 1259 4147
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+ <use xlink:href="#DejaVuSans-44"/>
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+ <use xlink:href="#DejaVuSans-6f" x="516.992188"/>
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+ </g>
+ </g>
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+ <g>
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+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(263.260777 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-45" d="M 628 4666
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(288.945473 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-46"/>
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+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(314.630168 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_11">
+ <!-- Planctomycetota -->
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+ <use xlink:href="#DejaVuSans-50"/>
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+ <g id="text_12">
+ <!-- Pseudomonadota -->
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+ <!-- Spirochaetota -->
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+ </g>
+ <g id="text_3">
+ <!-- Bacteroidota -->
+ <g transform="translate(128.474802 295.499375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <!-- Campylobacterota -->
+ <g transform="translate(154.159497 323.757187)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(179.844192 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(205.528887 314.230625)rotate(-90)scale(0.1 -0.1)">
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+ </g>
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+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(231.213582 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-44" d="M 1259 4147
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+ <use xlink:href="#DejaVuSans-6f" x="516.992188"/>
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+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(256.898277 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(282.582973 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-46"/>
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+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(308.267668 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_11">
+ <!-- Planctomycetota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Planctomycetota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Verrucomicrobiota -->
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+ <!-- Deinococcota -->
+ <g transform="translate(231.213582 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-44" d="M 1259 4147
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+ </defs>
+ <use xlink:href="#DejaVuSans-44"/>
+ <use xlink:href="#DejaVuSans-65" x="77.001953"/>
+ <use xlink:href="#DejaVuSans-69" x="138.525391"/>
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+ <use xlink:href="#DejaVuSans-6f" x="516.992188"/>
+ <use xlink:href="#DejaVuSans-74" x="578.173828"/>
+ <use xlink:href="#DejaVuSans-61" x="617.382812"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_8">
+ <g id="line2d_8">
+ <g>
+ <use xlink:href="#m5fc24fd46e" x="254.138902" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(256.898277 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-45" d="M 628 4666
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+ <use xlink:href="#DejaVuSans-6f" x="568.160156"/>
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+ </g>
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+ <g id="xtick_9">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(282.582973 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-46" d="M 628 4666
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+ </g>
+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(308.267668 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-4d" d="M 628 4666
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+ <use xlink:href="#DejaVuSans-4d"/>
+ <use xlink:href="#DejaVuSans-79" x="86.279297"/>
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+ <use xlink:href="#DejaVuSans-6f" x="200.439453"/>
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(333.952363 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-50" d="M 1259 4147
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+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-6c" x="60.302734"/>
+ <use xlink:href="#DejaVuSans-61" x="88.085938"/>
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+ </g>
+ </g>
+ <g id="xtick_12">
+ <g id="line2d_12">
+ <g>
+ <use xlink:href="#m5fc24fd46e" x="356.877683" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(359.637058 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
+ <use xlink:href="#DejaVuSans-65" x="110.652344"/>
+ <use xlink:href="#DejaVuSans-75" x="172.175781"/>
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+ <use xlink:href="#DejaVuSans-6d" x="360.212891"/>
+ <use xlink:href="#DejaVuSans-6f" x="457.625"/>
+ <use xlink:href="#DejaVuSans-6e" x="518.806641"/>
+ <use xlink:href="#DejaVuSans-61" x="582.185547"/>
+ <use xlink:href="#DejaVuSans-64" x="643.464844"/>
+ <use xlink:href="#DejaVuSans-6f" x="706.941406"/>
+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
+ <use xlink:href="#DejaVuSans-61" x="807.332031"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
+ <g id="line2d_13">
+ <g>
+ <use xlink:href="#m5fc24fd46e" x="382.562378" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(385.321753 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+ <use xlink:href="#DejaVuSans-53"/>
+ <use xlink:href="#DejaVuSans-70" x="63.476562"/>
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+ <use xlink:href="#DejaVuSans-68" x="309.761719"/>
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+ <use xlink:href="#DejaVuSans-65" x="434.419922"/>
+ <use xlink:href="#DejaVuSans-74" x="495.943359"/>
+ <use xlink:href="#DejaVuSans-6f" x="535.152344"/>
+ <use xlink:href="#DejaVuSans-74" x="596.333984"/>
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+ </g>
+ </g>
+ <g id="xtick_14">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(411.006448 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-54"/>
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+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(436.691143 312.6275)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-54"/>
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+ <g id="text_16">
+ <!-- Verrucomicrobiota -->
+ <g transform="translate(462.375838 323.175937)rotate(-90)scale(0.1 -0.1)">
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+ <!-- 0.0 -->
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+ <use xlink:href="#m922bba0e71" x="183.447317" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(186.206692 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-68" d="M 3513 2113
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+" transform="scale(0.015625)"/>
+ </defs>
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-68" x="69.824219"/>
+ <use xlink:href="#DejaVuSans-6c" x="133.203125"/>
+ <use xlink:href="#DejaVuSans-61" x="160.986328"/>
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+ </g>
+ </g>
+ <g id="xtick_6">
+ <g id="line2d_6">
+ <g>
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+ </g>
+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(211.891387 314.230625)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-79" x="69.824219"/>
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+ <use xlink:href="#DejaVuSans-6e" x="190.283203"/>
+ <use xlink:href="#DejaVuSans-6f" x="253.662109"/>
+ <use xlink:href="#DejaVuSans-62" x="314.84375"/>
+ <use xlink:href="#DejaVuSans-61" x="378.320312"/>
+ <use xlink:href="#DejaVuSans-63" x="439.599609"/>
+ <use xlink:href="#DejaVuSans-74" x="494.580078"/>
+ <use xlink:href="#DejaVuSans-65" x="533.789062"/>
+ <use xlink:href="#DejaVuSans-72" x="595.3125"/>
+ <use xlink:href="#DejaVuSans-69" x="636.425781"/>
+ <use xlink:href="#DejaVuSans-6f" x="664.208984"/>
+ <use xlink:href="#DejaVuSans-74" x="725.390625"/>
+ <use xlink:href="#DejaVuSans-61" x="764.599609"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_7">
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+ <g>
+ <use xlink:href="#m922bba0e71" x="234.816707" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(237.576082 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-44" d="M 1259 4147
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+ </defs>
+ <use xlink:href="#DejaVuSans-44"/>
+ <use xlink:href="#DejaVuSans-65" x="77.001953"/>
+ <use xlink:href="#DejaVuSans-69" x="138.525391"/>
+ <use xlink:href="#DejaVuSans-6e" x="166.308594"/>
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+ <use xlink:href="#DejaVuSans-63" x="290.869141"/>
+ <use xlink:href="#DejaVuSans-6f" x="345.849609"/>
+ <use xlink:href="#DejaVuSans-63" x="407.03125"/>
+ <use xlink:href="#DejaVuSans-63" x="462.011719"/>
+ <use xlink:href="#DejaVuSans-6f" x="516.992188"/>
+ <use xlink:href="#DejaVuSans-74" x="578.173828"/>
+ <use xlink:href="#DejaVuSans-61" x="617.382812"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_8">
+ <g id="line2d_8">
+ <g>
+ <use xlink:href="#m922bba0e71" x="260.501402" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(263.260777 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-45" d="M 628 4666
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+ </defs>
+ <use xlink:href="#DejaVuSans-45"/>
+ <use xlink:href="#DejaVuSans-75" x="63.183594"/>
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+ <use xlink:href="#DejaVuSans-63" x="326.998047"/>
+ <use xlink:href="#DejaVuSans-68" x="381.978516"/>
+ <use xlink:href="#DejaVuSans-61" x="445.357422"/>
+ <use xlink:href="#DejaVuSans-65" x="506.636719"/>
+ <use xlink:href="#DejaVuSans-6f" x="568.160156"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_9">
+ <g id="line2d_9">
+ <g>
+ <use xlink:href="#m922bba0e71" x="286.186098" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(288.945473 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-46" d="M 628 4666
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+ </defs>
+ <use xlink:href="#DejaVuSans-46"/>
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+ </g>
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+ <g id="xtick_10">
+ <g id="line2d_10">
+ <g>
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+ </g>
+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(314.630168 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-4d" d="M 628 4666
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+ <use xlink:href="#DejaVuSans-4d"/>
+ <use xlink:href="#DejaVuSans-79" x="86.279297"/>
+ <use xlink:href="#DejaVuSans-63" x="145.458984"/>
+ <use xlink:href="#DejaVuSans-6f" x="200.439453"/>
+ <use xlink:href="#DejaVuSans-70" x="261.621094"/>
+ <use xlink:href="#DejaVuSans-6c" x="325.097656"/>
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+ </g>
+ </g>
+ </g>
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+ <g>
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(340.314863 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-50" d="M 1259 4147
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+ </defs>
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-6c" x="60.302734"/>
+ <use xlink:href="#DejaVuSans-61" x="88.085938"/>
+ <use xlink:href="#DejaVuSans-6e" x="149.365234"/>
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+ </g>
+ </g>
+ <g id="xtick_12">
+ <g id="line2d_12">
+ <g>
+ <use xlink:href="#m922bba0e71" x="363.240183" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(365.999558 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
+ <use xlink:href="#DejaVuSans-65" x="110.652344"/>
+ <use xlink:href="#DejaVuSans-75" x="172.175781"/>
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+ <use xlink:href="#DejaVuSans-6d" x="360.212891"/>
+ <use xlink:href="#DejaVuSans-6f" x="457.625"/>
+ <use xlink:href="#DejaVuSans-6e" x="518.806641"/>
+ <use xlink:href="#DejaVuSans-61" x="582.185547"/>
+ <use xlink:href="#DejaVuSans-64" x="643.464844"/>
+ <use xlink:href="#DejaVuSans-6f" x="706.941406"/>
+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
+ <use xlink:href="#DejaVuSans-61" x="807.332031"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
+ <g id="line2d_13">
+ <g>
+ <use xlink:href="#m922bba0e71" x="388.924878" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(391.684253 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+ <use xlink:href="#DejaVuSans-53"/>
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+ <use xlink:href="#DejaVuSans-74" x="495.943359"/>
+ <use xlink:href="#DejaVuSans-6f" x="535.152344"/>
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+ </g>
+ <g id="xtick_14">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(417.368948 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-54"/>
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+ </g>
+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(443.053643 312.6275)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-54"/>
+ <use xlink:href="#DejaVuSans-68" x="61.083984"/>
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+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(176.666067 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(202.350762 314.230625)rotate(-90)scale(0.1 -0.1)">
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+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(228.035457 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(253.720152 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(279.404848 305.611875)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_10">
+ <!-- Mycoplasmatota -->
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+ <g id="text_11">
+ <!-- Planctomycetota -->
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+ <g id="text_13">
+ <!-- Spirochaetota -->
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+ <!-- Thermodesulfobacteriota -->
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index 20f7ce70749dd9ac85ddaadec0d6c9894a6aeb45..0b899b32a99ec35294cd40c287a65971d5983557 100644
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+ </g>
+ <g id="text_3">
+ <!-- Bacteroidota -->
+ <g transform="translate(128.474802 295.499375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <!-- Campylobacterota -->
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+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(179.844192 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(205.528887 314.230625)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-43"/>
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+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(231.213582 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(256.898277 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(282.582973 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(308.267668 314.224375)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_11">
+ <!-- Planctomycetota -->
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+ <g id="text_12">
+ <!-- Pseudomonadota -->
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+ <!-- Bacteroidota -->
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+ <!-- Campylobacterota -->
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+ <g id="text_5">
+ <!-- Chlamydiota -->
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+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(202.350762 314.230625)rotate(-90)scale(0.1 -0.1)">
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+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(228.035457 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(253.720152 304.624375)rotate(-90)scale(0.1 -0.1)">
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+ <!-- Fusobacteriota -->
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+ <!-- Mycoplasmatota -->
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+ <!-- Planctomycetota -->
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+ <g id="text_12">
+ <!-- Pseudomonadota -->
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+ <g id="text_13">
+ <!-- Spirochaetota -->
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+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
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+ </g>
+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(433.513018 312.6275)rotate(-90)scale(0.1 -0.1)">
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+ <!-- Verrucomicrobiota -->
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+ <!-- 0 -->
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+ <g id="text_18">
+ <!-- 5 -->
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+ <!-- 10 -->
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+ <!-- 15 -->
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+ <!-- 20 -->
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+ <!-- 25 -->
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+ </g>
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+ <g>
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+ </g>
+ </g>
+ <g id="text_5">
+ <!-- Chlamydiota -->
+ <g transform="translate(186.206692 294.819687)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-68" d="M 3513 2113
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+" transform="scale(0.015625)"/>
+ </defs>
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-68" x="69.824219"/>
+ <use xlink:href="#DejaVuSans-6c" x="133.203125"/>
+ <use xlink:href="#DejaVuSans-61" x="160.986328"/>
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+ </g>
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+ <g id="xtick_6">
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+ <g>
+ <use xlink:href="#m72be73627a" x="209.132012" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_6">
+ <!-- Cyanobacteriota -->
+ <g transform="translate(211.891387 314.230625)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-43"/>
+ <use xlink:href="#DejaVuSans-79" x="69.824219"/>
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+ <use xlink:href="#DejaVuSans-6e" x="190.283203"/>
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+ <use xlink:href="#DejaVuSans-61" x="378.320312"/>
+ <use xlink:href="#DejaVuSans-63" x="439.599609"/>
+ <use xlink:href="#DejaVuSans-74" x="494.580078"/>
+ <use xlink:href="#DejaVuSans-65" x="533.789062"/>
+ <use xlink:href="#DejaVuSans-72" x="595.3125"/>
+ <use xlink:href="#DejaVuSans-69" x="636.425781"/>
+ <use xlink:href="#DejaVuSans-6f" x="664.208984"/>
+ <use xlink:href="#DejaVuSans-74" x="725.390625"/>
+ <use xlink:href="#DejaVuSans-61" x="764.599609"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_7">
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+ <g>
+ <use xlink:href="#m72be73627a" x="234.816707" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_7">
+ <!-- Deinococcota -->
+ <g transform="translate(237.576082 299.50875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-44" d="M 1259 4147
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+ </defs>
+ <use xlink:href="#DejaVuSans-44"/>
+ <use xlink:href="#DejaVuSans-65" x="77.001953"/>
+ <use xlink:href="#DejaVuSans-69" x="138.525391"/>
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+ <use xlink:href="#DejaVuSans-6f" x="345.849609"/>
+ <use xlink:href="#DejaVuSans-63" x="407.03125"/>
+ <use xlink:href="#DejaVuSans-63" x="462.011719"/>
+ <use xlink:href="#DejaVuSans-6f" x="516.992188"/>
+ <use xlink:href="#DejaVuSans-74" x="578.173828"/>
+ <use xlink:href="#DejaVuSans-61" x="617.382812"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_8">
+ <g id="line2d_8">
+ <g>
+ <use xlink:href="#m72be73627a" x="260.501402" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_8">
+ <!-- Euryarchaeota -->
+ <g transform="translate(263.260777 304.624375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-45" d="M 628 4666
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+ <path id="DejaVuSans-75" d="M 544 1381
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+ </defs>
+ <use xlink:href="#DejaVuSans-45"/>
+ <use xlink:href="#DejaVuSans-75" x="63.183594"/>
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+ <use xlink:href="#DejaVuSans-63" x="326.998047"/>
+ <use xlink:href="#DejaVuSans-68" x="381.978516"/>
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+ <use xlink:href="#DejaVuSans-65" x="506.636719"/>
+ <use xlink:href="#DejaVuSans-6f" x="568.160156"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_9">
+ <g id="line2d_9">
+ <g>
+ <use xlink:href="#m72be73627a" x="286.186098" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_9">
+ <!-- Fusobacteriota -->
+ <g transform="translate(288.945473 305.611875)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-46" d="M 628 4666
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+ </defs>
+ <use xlink:href="#DejaVuSans-46"/>
+ <use xlink:href="#DejaVuSans-75" x="52.019531"/>
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+ </g>
+ </g>
+ <g id="xtick_10">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_10">
+ <!-- Mycoplasmatota -->
+ <g transform="translate(314.630168 314.224375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-4d" d="M 628 4666
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+ <use xlink:href="#DejaVuSans-4d"/>
+ <use xlink:href="#DejaVuSans-79" x="86.279297"/>
+ <use xlink:href="#DejaVuSans-63" x="145.458984"/>
+ <use xlink:href="#DejaVuSans-6f" x="200.439453"/>
+ <use xlink:href="#DejaVuSans-70" x="261.621094"/>
+ <use xlink:href="#DejaVuSans-6c" x="325.097656"/>
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+ <use xlink:href="#DejaVuSans-74" x="725.341797"/>
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+ </g>
+ </g>
+ </g>
+ <g id="xtick_11">
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+ <g>
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+ </g>
+ </g>
+ <g id="text_11">
+ <!-- Planctomycetota -->
+ <g transform="translate(340.314863 315.849375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-50" d="M 1259 4147
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+ </defs>
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-6c" x="60.302734"/>
+ <use xlink:href="#DejaVuSans-61" x="88.085938"/>
+ <use xlink:href="#DejaVuSans-6e" x="149.365234"/>
+ <use xlink:href="#DejaVuSans-63" x="212.744141"/>
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+ </g>
+ </g>
+ <g id="xtick_12">
+ <g id="line2d_12">
+ <g>
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+ </g>
+ </g>
+ <g id="text_12">
+ <!-- Pseudomonadota -->
+ <g transform="translate(365.999558 318.5025)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-50"/>
+ <use xlink:href="#DejaVuSans-73" x="58.552734"/>
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+ <use xlink:href="#DejaVuSans-75" x="172.175781"/>
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+ <use xlink:href="#DejaVuSans-6d" x="360.212891"/>
+ <use xlink:href="#DejaVuSans-6f" x="457.625"/>
+ <use xlink:href="#DejaVuSans-6e" x="518.806641"/>
+ <use xlink:href="#DejaVuSans-61" x="582.185547"/>
+ <use xlink:href="#DejaVuSans-64" x="643.464844"/>
+ <use xlink:href="#DejaVuSans-6f" x="706.941406"/>
+ <use xlink:href="#DejaVuSans-74" x="768.123047"/>
+ <use xlink:href="#DejaVuSans-61" x="807.332031"/>
+ </g>
+ </g>
+ </g>
+ <g id="xtick_13">
+ <g id="line2d_13">
+ <g>
+ <use xlink:href="#m72be73627a" x="388.924878" y="224.64" style="stroke: #000000; stroke-width: 0.8"/>
+ </g>
+ </g>
+ <g id="text_13">
+ <!-- Spirochaetota -->
+ <g transform="translate(391.684253 301.324375)rotate(-90)scale(0.1 -0.1)">
+ <defs>
+ <path id="DejaVuSans-53" d="M 3425 4513
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+ <use xlink:href="#DejaVuSans-53"/>
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+ <use xlink:href="#DejaVuSans-65" x="434.419922"/>
+ <use xlink:href="#DejaVuSans-74" x="495.943359"/>
+ <use xlink:href="#DejaVuSans-6f" x="535.152344"/>
+ <use xlink:href="#DejaVuSans-74" x="596.333984"/>
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+ </g>
+ <g id="xtick_14">
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+ </g>
+ </g>
+ <g id="text_14">
+ <!-- Thermodesulfobacteriota -->
+ <g transform="translate(417.368948 357.604062)rotate(-90)scale(0.1 -0.1)">
+ <defs>
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+ <use xlink:href="#DejaVuSans-54"/>
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+ </g>
+ </g>
+ <g id="text_15">
+ <!-- Thermoproteota -->
+ <g transform="translate(443.053643 312.6275)rotate(-90)scale(0.1 -0.1)">
+ <use xlink:href="#DejaVuSans-54"/>
+ <use xlink:href="#DejaVuSans-68" x="61.083984"/>
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+ <!-- Verrucomicrobiota -->
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diff --git a/public/mqsrac/Distribution_MqsRAC.svg b/public/mqsrac/Distribution_MqsRAC.svg
index 83e70e49eb2d77726cb15319f833d5bd7da965bf..6a6e6b576a8d6b84b08117296f18a748376d54a6 100644
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+ <!-- Fusobacteriota -->
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+ <!-- Mycoplasmatota -->
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+ <!-- Planctomycetota -->
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+ <!-- Pseudomonadota -->
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+ <!-- Thermodesulfobacteriota -->
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+ <!-- Thermoproteota -->
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+ <!-- Verrucomicrobiota -->
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diff --git a/public/nixi/NixI.svg b/public/nixi/NixI.svg
index 703a7444776c64f3e34990768dff2fdc43d60ae5..fc06b50ccc1460fa9ff36dc3437b68f4ea147f1f 100644
--- a/public/nixi/NixI.svg
+++ b/public/nixi/NixI.svg
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