From 7dd9344f58cfe669aee88a0ca5d659552ba002a3 Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Fri, 13 Oct 2023 16:11:03 +0200
Subject: [PATCH] add a Ref component
---
components/content/ArticleDoi.vue | 1 +
components/content/Ref.vue | 13 +++++++++++++
composables/useFetchArticle.ts | 3 ++-
content/3.defense-systems/abia.md | 8 +++++---
4 files changed, 21 insertions(+), 4 deletions(-)
create mode 100644 components/content/Ref.vue
diff --git a/components/content/ArticleDoi.vue b/components/content/ArticleDoi.vue
index 3cd6c619..ea79d240 100644
--- a/components/content/ArticleDoi.vue
+++ b/components/content/ArticleDoi.vue
@@ -28,6 +28,7 @@ const articleAbstract = computed(() => {
<template>
<v-list-item
:href="article?.href"
+ :id="props.doi"
:target="article?.target"
density="compact"
class="px-1"
diff --git a/components/content/Ref.vue b/components/content/Ref.vue
new file mode 100644
index 00000000..7031d3ae
--- /dev/null
+++ b/components/content/Ref.vue
@@ -0,0 +1,13 @@
+<script setup lang="ts">
+
+export interface Props {
+ doi: string;
+}
+const props = withDefaults(defineProps<Props>(), {});
+const { article } = useFetchArticle(props.doi);
+</script>
+<template>
+ <v-chip variant="text" :href="`#${props.doi}`" class="pa-0 text-caption font-italic">({{ article?.author[0]?.family ?? 'test' }} et al, {{
+ article.year
+ }})</v-chip>
+</template>
\ No newline at end of file
diff --git a/composables/useFetchArticle.ts b/composables/useFetchArticle.ts
index af26e93a..a829bc4a 100644
--- a/composables/useFetchArticle.ts
+++ b/composables/useFetchArticle.ts
@@ -25,6 +25,7 @@ export interface Article {
DOI: string
title: string
subtitle: string
+ author: Array<{ family: string; given: string }>
containerTitle: string
abstract: string
year: string
@@ -74,6 +75,7 @@ export function useFetchArticle(doi: string) {
DOI,
title: sanitizedTitle,
subtitle: toAuthorsString(author || []),
+ author,
containerTitle: sanitizedContainerTitle,
abstract: sanitizedAbstract,
year: published?.["date-parts"][0][0] ?? issued?.["date-parts"][0][0] ?? '',
@@ -89,7 +91,6 @@ export function useFetchArticle(doi: string) {
if (store.articles.size === 0) {
const localArticles = await queryContent('/_partials/_articles').where({ _partial: true }).findOne()
- console.log(localArticles)
if (localArticles?.articles && store.articles.size <= 0) {
for (const article of localArticles.articles) {
store.add(article)
diff --git a/content/3.defense-systems/abia.md b/content/3.defense-systems/abia.md
index 3e5d554c..fffc9c8a 100644
--- a/content/3.defense-systems/abia.md
+++ b/content/3.defense-systems/abia.md
@@ -11,7 +11,7 @@ tableColumns:
PFAM: PF00078, PF18160, PF18732
---
-# AbiA
+# AbiA
The AbiA system have been describe in a total of 2 subsystems.
Here is some example found in the RefSeq database:
@@ -24,9 +24,11 @@ AbiA_large subsystem in the genome of *Lactobacillus amylovorus* (GCF_002706375.
AbiA_small subsystem in the genome of *Mesobacillus foraminis* (GCF_003667765.1) is composed of 2 proteins: AbiA_small (WP_121614402.1)and, AbiA_SLATT (WP_121614403.1).
-## Distribution of the system among prokaryotes
+## Distribution of the system among prokaryotes
+
+The AbiA system is present in a total of 35 different species :ref{doi=10.1023/A:1002027321171}.
+
-The AbiA system is present in a total of 35 different species.
Among the 22k complete genomes of RefSeq, this system is present in 50 genomes (0.2 %).
--
GitLab