From 9425e0a6b77facf6f4c954a8c69d3757a9f42f0f Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Thu, 4 Apr 2024 11:04:05 +0200
Subject: [PATCH] y axis for genome count
---
.../content/ArticleSystemDistributionPlot.vue | 21 ++++++++++++-------
1 file changed, 14 insertions(+), 7 deletions(-)
diff --git a/components/content/ArticleSystemDistributionPlot.vue b/components/content/ArticleSystemDistributionPlot.vue
index c644c73c..b5bdbd31 100644
--- a/components/content/ArticleSystemDistributionPlot.vue
+++ b/components/content/ArticleSystemDistributionPlot.vue
@@ -64,7 +64,7 @@ const computedDistribution = computed(() => {
const distribution = []
for (const [taxo, values] of itemsPerGroup.entries()) {
if (toValFacetsPerRank[taxo] && toValFacetsPerRank[taxo] > 0) {
- distribution.push({ taxo, size: (values.size / toValFacetsPerRank[taxo]) * 100 })
+ distribution.push({ taxo, size: values.size, percent: (values.size / toValFacetsPerRank[taxo]) * 100 })
}
}
return distribution
@@ -102,9 +102,16 @@ const distributionOptions = computed(() => {
const { marginLeft, marginRight } = toValue(margin)
return {
...toValue(margin),
- y: { label: `% of genomes encoding ${toValue(page)?.title ?? 'the system'}` },
+ y: { label: `Number of genomes encoding ${toValue(page)?.title ?? 'the system'}` },
x: { label: selectedTaxoRank.value, tickRotate: 45 },
- color: { scheme: "plasma", legend: true, reverse: true, domain: [0, 100], marginLeft: 10, label: "percentage" },
+ color: {
+ scheme: "plasma",
+ legend: true,
+ reverse: true,
+ domain: [0, 100],
+ marginLeft: 10,
+ label: `% of genomes encoding ${toValue(page)?.title ?? 'the system'}`,
+ },
width: computedWidth.value - marginRight - marginLeft,
marks: [
Plot.barY(
@@ -112,7 +119,7 @@ const distributionOptions = computed(() => {
{
y: "size",
x: "taxo",
- fill: "size",
+ fill: "percent",
tip: true,
sort: { x: "-y" },
},
@@ -136,13 +143,13 @@ async function fetchSystemHits() {
query: "",
params: {
facets: ["*"],
- filter: [`type='${toValue(systemName)}'`],
+ filter: [`type = '${toValue(systemName)}'`],
limit: 500000,
}
})
systemHits.value = data.value
if (error.value) {
- throw createError(`Cannot get hits on refseq for system: ${toValue(systemName)}`)
+ throw createError(`Cannot get hits on refseq for system: ${toValue(systemName)} `)
}
}
@@ -158,7 +165,7 @@ async function fetchRefSeqTaxo() {
})
refseqTaxo.value = data.value
if (error.value) {
- throw createError(`Cannot get refseq taxo: ${toValue(systemName)}`)
+ throw createError(`Cannot get refseq taxo: ${toValue(systemName)} `)
}
}
--
GitLab