From a13077d168b791cf945a0f496f9376ea6014c15e Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Thu, 11 Jan 2024 17:36:04 +0100
Subject: [PATCH] correct link to protein accession
---
components/content/RefseqDb.vue | 17 ++++++++++++++---
1 file changed, 14 insertions(+), 3 deletions(-)
diff --git a/components/content/RefseqDb.vue b/components/content/RefseqDb.vue
index 44f9e1ee..2093c06d 100644
--- a/components/content/RefseqDb.vue
+++ b/components/content/RefseqDb.vue
@@ -109,11 +109,11 @@ const selectedTaxoRank = ref("phylum");
const headers = ref([
{ title: "Replicon", key: "replicon" },
{
- title: "Type",
+ title: "System",
key: "type",
},
{
- title: "Subtype",
+ title: "Subsystem",
key: "subtype",
},
{
@@ -271,7 +271,7 @@ function namesToAccessionChips(names: string[]) {
return namesToCollapsibleChips(names).map(it => {
return {
...it,
- // href: new URL(it.title, "http://toto.pasteur.cloud").toString()
+ href: new URL(it.title, "https://www.ncbi.nlm.nih.gov/protein/").toString()
}
})
}
@@ -473,6 +473,17 @@ async function downloadPng(component: ComponentPublicInstance | null, filename:
<CollapsibleChips :items="namesToAccessionChips(item.accession_in_sys)">
</CollapsibleChips>
</template>
+ <template #[`item.type`]="{ item }">
+ <v-chip color="primary" variant="text" :to="`/defense-systems/${item.type.toLowerCase()}`" target="_blank"> {{
+ item.type }}
+ </v-chip>
+ </template>
+
+ <template #[`item.subtype`]="{ item }">
+ <v-chip color="primary" variant="text" :to="`/defense-systems/${item.type.toLowerCase()}`" target="_blank"> {{
+ item.subtype }}
+ </v-chip>
+ </template>
</ServerDbTable>
--
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