diff --git a/components/content/ArticleDoi.vue b/components/content/ArticleDoi.vue
index f453ffe452d04d8bafdc0341b831047f498cbc56..fdfe831ede385401632c101204cfa4cf9c24c296 100644
--- a/components/content/ArticleDoi.vue
+++ b/components/content/ArticleDoi.vue
@@ -11,6 +11,9 @@ const { article } = useFetchArticle(props.doi)
const show = ref(false)
console.log(article)
+const articleTitle = computed(() => { return props?.title ?? article.value?.title ?? props.doi })
+const articleAbstract = computed(() => { return props.abstract ?? article.value?.abstract })
+
</script>
<template>
<v-list-item :href="article?.href" :target="article?.target">
@@ -22,13 +25,13 @@ console.log(article)
<v-card flat color="transparent" density="compact">
<v-card-item density="compact">
- <v-card-title><span class="text-subtitle-1 font-weight-bold">{{ article?.title ?? props?.title ?? props.doi
+ <v-card-title><span class="text-subtitle-1 font-weight-bold">{{ articleTitle
}}</span></v-card-title>
<v-card-subtitle> {{ article?.subtitle ?? "no subtitle" }}</v-card-subtitle>
<v-card-subtitle> {{ article?.containerTitle ?? "no containerTitle" }} ({{ article?.year
}})</v-card-subtitle>
</v-card-item>
- <v-card-actions v-if="article?.abstract ?? props.abstract" density="compact">
+ <v-card-actions v-if="articleAbstract" density="compact">
<v-btn size="x-small" variant="outlined" :append-icon="show ? 'mdi-chevron-up' : 'mdi-chevron-down'"
@click.stop.prevent="show = !show">Abstract</v-btn>
</v-card-actions>
@@ -36,7 +39,7 @@ console.log(article)
<v-expand-transition>
<v-card v-show="show" flat color="transparent">
<v-card-text>
- {{ article?.abstract ?? props.abstract }}
+ {{ articleAbstract }}
</v-card-text>
</v-card>
diff --git a/components/content/ListSystems.vue b/components/content/ListSystems.vue
index beb7ef1162bd50e3cf0af3bf8c1eafc8fcaa564f..0831ea2ba3d83f2852a91ca1a6bfdd80c9eafd92 100644
--- a/components/content/ListSystems.vue
+++ b/components/content/ListSystems.vue
@@ -36,8 +36,9 @@ function filterOnlyCapsText(value, query, item) {
<v-chip variant="text" link :to="`${item.columns.system.path}`">{{
item.columns.system.name }}</v-chip>
</template>
- <template #[`item.doi`]="{ item }">
- <ArticleDoiList v-if="item.columns?.doi" :items="[item.columns.doi]" :divider="false" />
+ <template #[`item.article`]="{ item }">
+ <ArticleDoi v-if="item.columns?.article" :doi="item.columns.article.doi"
+ :title="item.columns.article?.title" :abstract="item.columns.article?.abstract" :divider="false" />
</template>
</v-data-table>
</v-card>
diff --git a/content/2.defense-systems/abi2.md b/content/2.defense-systems/abi2.md
index b7f40795ec77821552d12ecd1adaf600627313ad..d13072925777a978ff9f3549b9f34db0bac62bb6 100644
--- a/content/2.defense-systems/abi2.md
+++ b/content/2.defense-systems/abi2.md
@@ -1,7 +1,10 @@
---
title: Abi2
tableColumns:
- doi: 10.1016/j.mib.2005.06.006
+ article:
+ doi: 10.1016/j.mib.2005.06.006
+ abstract: |
+ Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
---
The Abi2 system is composed of one protein: Abi_2.
diff --git a/content/2.defense-systems/abia.md b/content/2.defense-systems/abia.md
index fd1b4e479266383c44c234a6e950fd73576a9fb4..0874239e858143d2f13a7e35f1a8c4267dda73c4 100644
--- a/content/2.defense-systems/abia.md
+++ b/content/2.defense-systems/abia.md
@@ -1,7 +1,10 @@
---
title: AbiA
tableColumns:
- doi: 10.1016/j.mib.2005.06.006
+ article:
+ doi: 10.1016/j.mib.2005.06.006
+ abstract: |
+ Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
---
The AbiA system have been describe in a total of 2 subsystems.
diff --git a/content/2.defense-systems/abib.md b/content/2.defense-systems/abib.md
index 0428f5350d231959de2f73c8d626538f44426bf9..1ed106de4609be25a267f408fde0d80523a1f6cf 100644
--- a/content/2.defense-systems/abib.md
+++ b/content/2.defense-systems/abib.md
@@ -1,7 +1,10 @@
---
title: AbiB
tableColumns:
- doi: 10.1016/j.mib.2005.06.006
+ article:
+ doi: 10.1016/j.mib.2005.06.006
+ abstract: |
+ Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
---
The AbiB system is composed of one protein: AbiB.
diff --git a/content/2.defense-systems/abic.md b/content/2.defense-systems/abic.md
index 26d4e748ffc0bbf72e64bc8f7e3a8510e9cd4c0d..6c9ca7050c944159235ab7a56e057d77c5812935 100644
--- a/content/2.defense-systems/abic.md
+++ b/content/2.defense-systems/abic.md
@@ -1,7 +1,6 @@
---
title: AbiC
-tableColumns:
- doi: 10.1016/j.mib.2005.06.006
+
---
The AbiC system is composed of one protein: AbiC.
diff --git a/content/2.defense-systems/abid.md b/content/2.defense-systems/abid.md
index 6b1230e0ad38a5de95a887f41a34f7368efa0f8f..f01d7a2856e408c91861ffdb96a1375b61ee1780 100644
--- a/content/2.defense-systems/abid.md
+++ b/content/2.defense-systems/abid.md
@@ -1,7 +1,6 @@
---
title: AbiD
-tableColumns:
- doi: 10.1016/j.mib.2005.06.006
+
---
The AbiD system is composed of one protein: AbiD.
diff --git a/content/2.defense-systems/abie.md b/content/2.defense-systems/abie.md
index b83cbadb2765f6cc52db0b6d73979019a3f64114..0111e34cc39844cd6ba6b240b34c276f0bdffe80 100644
--- a/content/2.defense-systems/abie.md
+++ b/content/2.defense-systems/abie.md
@@ -1,7 +1,6 @@
---
title: AbiE
-tableColumns:
- doi: 10.1016/j.mib.2005.06.006
+
---
AbiE is a family of an anti-phage defense systems. They act through a Toxin-Antitoxin mechanism, and are comprised of a pair of genes, with one gene being toxic while the other confers immunity to this toxicity.Â
diff --git a/content/2.defense-systems/abig.md b/content/2.defense-systems/abig.md
index b21a9877ffff4db9ef015ed6073b418494bba538..f69457534d67666d20fd946556190300783f24e2 100644
--- a/content/2.defense-systems/abig.md
+++ b/content/2.defense-systems/abig.md
@@ -1,7 +1,6 @@
---
title: AbiG
-tableColumns:
- doi: 10.1016/j.mib.2005.06.006
+
---
The AbiG system is composed of 2 proteins: AbiGi and, AbiGii.
diff --git a/content/2.defense-systems/abih.md b/content/2.defense-systems/abih.md
index 32d4ddc2264c9d617486af03b0ff6bef7f0cd372..76c6e63074d96397dadab90866005de494841aa1 100644
--- a/content/2.defense-systems/abih.md
+++ b/content/2.defense-systems/abih.md
@@ -1,7 +1,10 @@
---
title: AbiH
tableColumns:
- doi: 10.1111/j.1574-6968.1996.tb08446.x
+ article:
+ doi: 10.1111/j.1574-6968.1996.tb08446.x
+ abstract: |
+ A gene which encodes resistance by abortive infection (Abi+) to bacteriophage was cloned from Lactococcus lactis ssp. lactis biovar. diacetylactis S94. This gene was found to confer a reduction in efficiency of plating and plaque size for prolate-headed bacteriophage φ53 (group I of homology) and total resistance to the small isometric-headed bacteriophage φ59 (group III of homology). The cloned gene is predicted to encode a polypeptide of 346 amino acid residues with a deduced molecular mass of 41 455 Da. No homology with any previously described genes was found. A probe was used to determine the presence of this gene in two strains on 31 tested.
---
## Example of genomic structure
diff --git a/content/2.defense-systems/abiv.md b/content/2.defense-systems/abiv.md
index 162b5edd31ab24883c5536930240fa00eefded69..96f646c40a5e66eabc937023143a2313c510885b 100644
--- a/content/2.defense-systems/abiv.md
+++ b/content/2.defense-systems/abiv.md
@@ -1,7 +1,8 @@
---
title: AbiV
tableColumns:
- doi: 10.1128/AEM.00780-08
+ article:
+ doi: 10.1128/AEM.00780-08
---
## Example of genomic structure
diff --git a/content/2.defense-systems/rst_paris.md b/content/2.defense-systems/rst_paris.md
index acdd06f1f8cf409ea194141ea4e675764059ee09..2cee115851c98302c01f7f87894ba93f2d4feedb 100644
--- a/content/2.defense-systems/rst_paris.md
+++ b/content/2.defense-systems/rst_paris.md
@@ -1,7 +1,6 @@
---
title: Rst_PARIS
-tableColumns:
- doi: https://doi.org/10.1101/2021.01.21.427644
+
---
## Description
@@ -56,7 +55,7 @@ Subsystem Paris 2 with a system from *Escherichia coli (P4 loci)* in *Escherichi
---
items:
- doi: 10.1016/j.chom.2022.02.018
-
+
---
::