From b9566d14d20b80fb5c606086aada6d9621ff07e4 Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Fri, 22 Dec 2023 11:39:49 +0100
Subject: [PATCH] handle strcture data copy in deplo
---
.gitlab-ci.yml | 9 +++++++++
components/content/MolstarPdbePlugin.vue | 14 ++++++++------
2 files changed, 17 insertions(+), 6 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index e82aaa38..4d7cad01 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -468,6 +468,15 @@ load-website:prod:
--set env="${ENV:-development}"
--values deploy/df-wiki/values.yaml
--values deploy/df-wiki/values.${ENV:-development}.yaml
+ - kubectl --namespace ${NAMESPACE} wait pod -l "app.kubernetes.io/name=df-wiki" --for condition=Ready --timeout=600s
+ - echo "Wiki pod is ready"
+ - WIKI_POD=$(kubectl --namespace ${NAMESPACE} get pods -l "app.kubernetes.io/name=df-wiki" --output jsonpath='{.items[0].metadata.name}')
+ - echo ${WIKI_POD}
+ - kubectl --namespace ${NAMESPACE} cp .output/public/ ${WIKI_POD}:/website
+ - kubectl --namespace ${NAMESPACE} cp scripts/copy-structure-data.sh ${WIKI_POD}:/structure-data/sanitized-dump
+ - kubectl --namespace ${NAMESPACE} exec ${WIKI_POD} -- bash -c 'cd /structure-data/sanitized-dump && bash copy-structure-data.sh'
+
+
deploy:dev:
extends: .deploy
diff --git a/components/content/MolstarPdbePlugin.vue b/components/content/MolstarPdbePlugin.vue
index aa034479..87903b6f 100644
--- a/components/content/MolstarPdbePlugin.vue
+++ b/components/content/MolstarPdbePlugin.vue
@@ -165,10 +165,12 @@ const moleculeFormat: Ref<string> = ref("pdb")
</v-row>
</template>
<v-row v-else>
- <span class="d-flex flex-wrap align-center justify-center">
- <v-select v-model="selectedPdb" label="Select PDB" :items="refinedDataUrls" hide-details="auto">
- </v-select>
- </span>
+ <v-col>
+ <span class="d-flex flex-wrap align-center justify-center">
+ <v-select v-model="selectedPdb" label="Select PDB" :items="refinedDataUrls" hide-details="auto">
+ </v-select>
+ </span>
+ </v-col>
</v-row>
<v-dialog v-model="dialog" transition="dialog-bottom-transition" fullscreen :scrim="false">
<v-card flat :rounded="false">
@@ -256,12 +258,12 @@ const moleculeFormat: Ref<string> = ref("pdb")
</template>
-<style scoped>
+<style>
.msp-plugin .msp-plugin-content {
color: black !important;
}
-.msp-layout-expanded {
+div.msp-plugin-content.msp-layout-expanded {
z-index: 99 !important
}
--
GitLab