diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 4540b452977a8393b24bb38961b0e1255774d3fe..c44a22fd559b5cf0d5c38c432de7fdc4142d7c43 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -26,6 +26,7 @@ cache:
stages:
- delete-release
- build-df-cli
+ - lint
- get-data
- deploy-meilisearch
- update-meilisearch-indexes
@@ -61,10 +62,8 @@ build:df-wiki-cli:
- echo "Build done ..."
- poetry publish --repository gitlab --skip-existing
- echo "Publishing done!"
- rules:
- - changes:
- - packages/df-wiki-cli/**/*.{py, toml} # ... or whatever your file extension is
- allow_failure: false
+ when: manual
+ allow_failure: true
################ DEPLOY MEILISEARCH #################
.deploy:meilisearch:
@@ -163,6 +162,20 @@ delete-meili-helm-release:prod:
- helm delete -n ${NAMESPACE} ${CI_PROJECT_NAME}-${CI_ENVIRONMENT_NAME}-meilisearch
+# lint
+
+lint:
+ image: python:3.11-bullseye
+ stage: lint
+ before_script:
+ - pip install df-wiki-cli --index-url https://gitlab-ci-token:${CI_JOB_TOKEN}@gitlab.pasteur.fr/api/v4/projects/5222/packages/pypi/simple
+ - cd content/3.defense-systems
+ script:
+ - find . -name '*.md' -print0 | xargs -0 -I {} df-wiki-cli content lint --file {}
+ when: manual
+ rules:
+ - if: $CI_COMMIT_BRANCH != "main"
+
# Update Meili search indexes
.update-meilisearch-index:
diff --git a/packages/df-wiki-cli/df_wiki_cli/content/__init__.py b/packages/df-wiki-cli/df_wiki_cli/content/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/packages/df-wiki-cli/df_wiki_cli/content/main.py b/packages/df-wiki-cli/df_wiki_cli/content/main.py
new file mode 100644
index 0000000000000000000000000000000000000000..11113150dfc2665ea144855cd5e2d85fd79834f4
--- /dev/null
+++ b/packages/df-wiki-cli/df_wiki_cli/content/main.py
@@ -0,0 +1,76 @@
+import typer
+from typing_extensions import Annotated
+from typing import Optional, List
+from pathlib import Path
+from pydantic import BaseModel, ValidationError
+from pydantic_yaml import parse_yaml_raw_as, to_yaml_str
+import frontmatter
+from enum import Enum
+from rich.console import Console
+from rich import print as rprint
+from rich.layout import Layout
+from rich.panel import Panel
+
+
+console = Console()
+app = typer.Typer()
+
+
+class LayoutEnum(str, Enum):
+ article = "article"
+ db = "db"
+
+
+class TableArticle(BaseModel):
+ doi: str
+
+
+class TableColumns(BaseModel):
+ article: TableArticle
+ Sensor: str
+ Activator: str
+ Effector: str
+ PFAM: str
+
+
+class RelevantAbstract(BaseModel):
+ doi: str
+
+
+class FrontMatter(BaseModel):
+ title: str
+ layout: LayoutEnum
+ tableColumns: TableColumns
+ relevantAbstracts: List[RelevantAbstract]
+ contributors: List[str]
+
+
+@app.command()
+def lint(
+ file: Annotated[
+ Path,
+ typer.Option(
+ exists=False,
+ file_okay=True,
+ writable=True,
+ ),
+ ],
+):
+ console.rule(f"[bold blue]{file.name}", style="blue")
+
+ with open(file) as f:
+ metadata, _ = frontmatter.parse(f.read())
+ # print(metadata)
+ try:
+ FrontMatter.model_validate(metadata)
+ except ValidationError as exc:
+ # print(repr(exc.errors()[0]["type"]))
+ # print(repr(exc))
+ # print(exc.errors())
+ # pprint(exc.errors(), expand_all=True)
+ for err in exc.errors():
+ console.print(
+ f"[red]{err['msg']} : {err['type']} {' -> '.join(err['loc'])}"
+ )
+ else:
+ console.print("[green] Everything is alright")
diff --git a/packages/df-wiki-cli/df_wiki_cli/main.py b/packages/df-wiki-cli/df_wiki_cli/main.py
index b825d4341eb7abab051d900cbdfa44825703a53c..ace7d2e92bbc20738e98c10a7a882fe23523a121 100644
--- a/packages/df-wiki-cli/df_wiki_cli/main.py
+++ b/packages/df-wiki-cli/df_wiki_cli/main.py
@@ -3,11 +3,13 @@ from pathlib import Path
from typing_extensions import Annotated
from df_wiki_cli.articles import fetch_articles
from df_wiki_cli.pfam import fetch_pfam
-from df_wiki_cli.meilisearch import main
+from df_wiki_cli.meilisearch import main as ms_main
+from df_wiki_cli.content import main as content_main
# from df_wiki_cli.ms import main as ms_main
app = typer.Typer()
-app.add_typer(main.app, name="meilisearch")
+app.add_typer(ms_main.app, name="meilisearch")
+app.add_typer(content_main.app, name="content")
@app.callback()
diff --git a/packages/df-wiki-cli/poetry.lock b/packages/df-wiki-cli/poetry.lock
index 824af785fdb3029922717e5d6f05659b9cdfc5c1..95e4ca23f7e387c02a6506294ccee8110f161c08 100644
--- a/packages/df-wiki-cli/poetry.lock
+++ b/packages/df-wiki-cli/poetry.lock
@@ -241,6 +241,25 @@ files = [
{file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"},
]
+[[package]]
+name = "importlib-metadata"
+version = "6.8.0"
+description = "Read metadata from Python packages"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "importlib_metadata-6.8.0-py3-none-any.whl", hash = "sha256:3ebb78df84a805d7698245025b975d9d67053cd94c79245ba4b3eb694abe68bb"},
+ {file = "importlib_metadata-6.8.0.tar.gz", hash = "sha256:dbace7892d8c0c4ac1ad096662232f831d4e64f4c4545bd53016a3e9d4654743"},
+]
+
+[package.dependencies]
+zipp = ">=0.5"
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+perf = ["ipython"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
+
[[package]]
name = "markdown-it-py"
version = "3.0.0"
@@ -588,6 +607,27 @@ files = [
[package.dependencies]
typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0"
+[[package]]
+name = "pydantic-yaml"
+version = "1.2.0"
+description = "Adds some YAML functionality to the excellent `pydantic` library."
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "pydantic_yaml-1.2.0-py3-none-any.whl", hash = "sha256:196cd4286a66cbe913bcc2e463251cb6b73ebe5ac9c8af2ceed0b1c72ddc03a2"},
+ {file = "pydantic_yaml-1.2.0.tar.gz", hash = "sha256:54bdaf4da25bca95bb9ba790b1a5c6b4b3e93f7cf218fcde46b3073b61779f81"},
+]
+
+[package.dependencies]
+importlib-metadata = "*"
+pydantic = ">=1.8"
+"ruamel.yaml" = ">=0.16.0,<0.18.0"
+typing-extensions = ">=4.5.0"
+
+[package.extras]
+dev = ["black (==23.3.0)", "mypy (==1.5.1)", "pre-commit (==2.21.0)", "pytest (==7.4.2)", "ruff (==0.0.291)", "setuptools (>=61.0.0)", "setuptools-scm[toml] (>=6.2)"]
+docs = ["mkdocs", "mkdocs-material", "mkdocstrings[python]", "pygments", "pymdown-extensions"]
+
[[package]]
name = "pygments"
version = "2.16.1"
@@ -630,6 +670,24 @@ files = [
[package.dependencies]
six = ">=1.5"
+[[package]]
+name = "python-frontmatter"
+version = "1.0.1"
+description = "Parse and manage posts with YAML (or other) frontmatter"
+optional = false
+python-versions = "*"
+files = [
+ {file = "python-frontmatter-1.0.1.tar.gz", hash = "sha256:a6a082844fc601f34e4dd576bed8fcb5ef19112166e087629e4d6ba9bf4f7c35"},
+ {file = "python_frontmatter-1.0.1-py3-none-any.whl", hash = "sha256:0599198cc01b445e5d0be74ff35be0a6c7442dddbdb0803e018be4e055397f6a"},
+]
+
+[package.dependencies]
+PyYAML = "*"
+
+[package.extras]
+docs = ["sphinx"]
+test = ["pyaml", "pytest", "toml"]
+
[[package]]
name = "pytz"
version = "2023.3.post1"
@@ -641,6 +699,65 @@ files = [
{file = "pytz-2023.3.post1.tar.gz", hash = "sha256:7b4fddbeb94a1eba4b557da24f19fdf9db575192544270a9101d8509f9f43d7b"},
]
+[[package]]
+name = "pyyaml"
+version = "6.0.1"
+description = "YAML parser and emitter for Python"
+optional = false
+python-versions = ">=3.6"
+files = [
+ {file = "PyYAML-6.0.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d858aa552c999bc8a8d57426ed01e40bef403cd8ccdd0fc5f6f04a00414cac2a"},
+ {file = "PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:fd66fc5d0da6d9815ba2cebeb4205f95818ff4b79c3ebe268e75d961704af52f"},
+ {file = "PyYAML-6.0.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:69b023b2b4daa7548bcfbd4aa3da05b3a74b772db9e23b982788168117739938"},
+ {file = "PyYAML-6.0.1-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:81e0b275a9ecc9c0c0c07b4b90ba548307583c125f54d5b6946cfee6360c733d"},
+ {file = "PyYAML-6.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ba336e390cd8e4d1739f42dfe9bb83a3cc2e80f567d8805e11b46f4a943f5515"},
+ {file = "PyYAML-6.0.1-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:326c013efe8048858a6d312ddd31d56e468118ad4cdeda36c719bf5bb6192290"},
+ {file = "PyYAML-6.0.1-cp310-cp310-win32.whl", hash = "sha256:bd4af7373a854424dabd882decdc5579653d7868b8fb26dc7d0e99f823aa5924"},
+ {file = "PyYAML-6.0.1-cp310-cp310-win_amd64.whl", hash = "sha256:fd1592b3fdf65fff2ad0004b5e363300ef59ced41c2e6b3a99d4089fa8c5435d"},
+ {file = "PyYAML-6.0.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:6965a7bc3cf88e5a1c3bd2e0b5c22f8d677dc88a455344035f03399034eb3007"},
+ {file = "PyYAML-6.0.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:f003ed9ad21d6a4713f0a9b5a7a0a79e08dd0f221aff4525a2be4c346ee60aab"},
+ {file = "PyYAML-6.0.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:42f8152b8dbc4fe7d96729ec2b99c7097d656dc1213a3229ca5383f973a5ed6d"},
+ {file = "PyYAML-6.0.1-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:062582fca9fabdd2c8b54a3ef1c978d786e0f6b3a1510e0ac93ef59e0ddae2bc"},
+ {file = "PyYAML-6.0.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d2b04aac4d386b172d5b9692e2d2da8de7bfb6c387fa4f801fbf6fb2e6ba4673"},
+ {file = "PyYAML-6.0.1-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:e7d73685e87afe9f3b36c799222440d6cf362062f78be1013661b00c5c6f678b"},
+ {file = "PyYAML-6.0.1-cp311-cp311-win32.whl", hash = "sha256:1635fd110e8d85d55237ab316b5b011de701ea0f29d07611174a1b42f1444741"},
+ {file = "PyYAML-6.0.1-cp311-cp311-win_amd64.whl", hash = "sha256:bf07ee2fef7014951eeb99f56f39c9bb4af143d8aa3c21b1677805985307da34"},
+ {file = "PyYAML-6.0.1-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:855fb52b0dc35af121542a76b9a84f8d1cd886ea97c84703eaa6d88e37a2ad28"},
+ {file = "PyYAML-6.0.1-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:40df9b996c2b73138957fe23a16a4f0ba614f4c0efce1e9406a184b6d07fa3a9"},
+ {file = "PyYAML-6.0.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6c22bec3fbe2524cde73d7ada88f6566758a8f7227bfbf93a408a9d86bcc12a0"},
+ {file = "PyYAML-6.0.1-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:8d4e9c88387b0f5c7d5f281e55304de64cf7f9c0021a3525bd3b1c542da3b0e4"},
+ {file = "PyYAML-6.0.1-cp312-cp312-win32.whl", hash = "sha256:d483d2cdf104e7c9fa60c544d92981f12ad66a457afae824d146093b8c294c54"},
+ {file = "PyYAML-6.0.1-cp312-cp312-win_amd64.whl", hash = "sha256:0d3304d8c0adc42be59c5f8a4d9e3d7379e6955ad754aa9d6ab7a398b59dd1df"},
+ {file = "PyYAML-6.0.1-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:50550eb667afee136e9a77d6dc71ae76a44df8b3e51e41b77f6de2932bfe0f47"},
+ {file = "PyYAML-6.0.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1fe35611261b29bd1de0070f0b2f47cb6ff71fa6595c077e42bd0c419fa27b98"},
+ {file = "PyYAML-6.0.1-cp36-cp36m-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:704219a11b772aea0d8ecd7058d0082713c3562b4e271b849ad7dc4a5c90c13c"},
+ {file = "PyYAML-6.0.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:afd7e57eddb1a54f0f1a974bc4391af8bcce0b444685d936840f125cf046d5bd"},
+ {file = "PyYAML-6.0.1-cp36-cp36m-win32.whl", hash = "sha256:fca0e3a251908a499833aa292323f32437106001d436eca0e6e7833256674585"},
+ {file = "PyYAML-6.0.1-cp36-cp36m-win_amd64.whl", hash = "sha256:f22ac1c3cac4dbc50079e965eba2c1058622631e526bd9afd45fedd49ba781fa"},
+ {file = "PyYAML-6.0.1-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:b1275ad35a5d18c62a7220633c913e1b42d44b46ee12554e5fd39c70a243d6a3"},
+ {file = "PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:18aeb1bf9a78867dc38b259769503436b7c72f7a1f1f4c93ff9a17de54319b27"},
+ {file = "PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:596106435fa6ad000c2991a98fa58eeb8656ef2325d7e158344fb33864ed87e3"},
+ {file = "PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:baa90d3f661d43131ca170712d903e6295d1f7a0f595074f151c0aed377c9b9c"},
+ {file = "PyYAML-6.0.1-cp37-cp37m-win32.whl", hash = "sha256:9046c58c4395dff28dd494285c82ba00b546adfc7ef001486fbf0324bc174fba"},
+ {file = "PyYAML-6.0.1-cp37-cp37m-win_amd64.whl", hash = "sha256:4fb147e7a67ef577a588a0e2c17b6db51dda102c71de36f8549b6816a96e1867"},
+ {file = "PyYAML-6.0.1-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:1d4c7e777c441b20e32f52bd377e0c409713e8bb1386e1099c2415f26e479595"},
+ {file = "PyYAML-6.0.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a0cd17c15d3bb3fa06978b4e8958dcdc6e0174ccea823003a106c7d4d7899ac5"},
+ {file = "PyYAML-6.0.1-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:28c119d996beec18c05208a8bd78cbe4007878c6dd15091efb73a30e90539696"},
+ {file = "PyYAML-6.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7e07cbde391ba96ab58e532ff4803f79c4129397514e1413a7dc761ccd755735"},
+ {file = "PyYAML-6.0.1-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:49a183be227561de579b4a36efbb21b3eab9651dd81b1858589f796549873dd6"},
+ {file = "PyYAML-6.0.1-cp38-cp38-win32.whl", hash = "sha256:184c5108a2aca3c5b3d3bf9395d50893a7ab82a38004c8f61c258d4428e80206"},
+ {file = "PyYAML-6.0.1-cp38-cp38-win_amd64.whl", hash = "sha256:1e2722cc9fbb45d9b87631ac70924c11d3a401b2d7f410cc0e3bbf249f2dca62"},
+ {file = "PyYAML-6.0.1-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:9eb6caa9a297fc2c2fb8862bc5370d0303ddba53ba97e71f08023b6cd73d16a8"},
+ {file = "PyYAML-6.0.1-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:c8098ddcc2a85b61647b2590f825f3db38891662cfc2fc776415143f599bb859"},
+ {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5773183b6446b2c99bb77e77595dd486303b4faab2b086e7b17bc6bef28865f6"},
+ {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:b786eecbdf8499b9ca1d697215862083bd6d2a99965554781d0d8d1ad31e13a0"},
+ {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bc1bf2925a1ecd43da378f4db9e4f799775d6367bdb94671027b73b393a7c42c"},
+ {file = "PyYAML-6.0.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:04ac92ad1925b2cff1db0cfebffb6ffc43457495c9b3c39d3fcae417d7125dc5"},
+ {file = "PyYAML-6.0.1-cp39-cp39-win32.whl", hash = "sha256:faca3bdcf85b2fc05d06ff3fbc1f83e1391b3e724afa3feba7d13eeab355484c"},
+ {file = "PyYAML-6.0.1-cp39-cp39-win_amd64.whl", hash = "sha256:510c9deebc5c0225e8c96813043e62b680ba2f9c50a08d3724c7f28a747d1486"},
+ {file = "PyYAML-6.0.1.tar.gz", hash = "sha256:bfdf460b1736c775f2ba9f6a92bca30bc2095067b8a9d77876d1fad6cc3b4a43"},
+]
+
[[package]]
name = "pyzotero"
version = "1.5.18"
@@ -700,6 +817,83 @@ pygments = ">=2.13.0,<3.0.0"
[package.extras]
jupyter = ["ipywidgets (>=7.5.1,<9)"]
+[[package]]
+name = "ruamel-yaml"
+version = "0.17.40"
+description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
+optional = false
+python-versions = ">=3"
+files = [
+ {file = "ruamel.yaml-0.17.40-py3-none-any.whl", hash = "sha256:b16b6c3816dff0a93dca12acf5e70afd089fa5acb80604afd1ffa8b465b7722c"},
+ {file = "ruamel.yaml-0.17.40.tar.gz", hash = "sha256:6024b986f06765d482b5b07e086cc4b4cd05dd22ddcbc758fa23d54873cf313d"},
+]
+
+[package.dependencies]
+"ruamel.yaml.clib" = {version = ">=0.2.7", markers = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""}
+
+[package.extras]
+docs = ["mercurial (>5.7)", "ryd"]
+jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
+
+[[package]]
+name = "ruamel-yaml-clib"
+version = "0.2.8"
+description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
+optional = false
+python-versions = ">=3.6"
+files = [
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:b42169467c42b692c19cf539c38d4602069d8c1505e97b86387fcf7afb766e1d"},
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-macosx_13_0_arm64.whl", hash = "sha256:07238db9cbdf8fc1e9de2489a4f68474e70dffcb32232db7c08fa61ca0c7c462"},
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl", hash = "sha256:fff3573c2db359f091e1589c3d7c5fc2f86f5bdb6f24252c2d8e539d4e45f412"},
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-manylinux_2_24_aarch64.whl", hash = "sha256:aa2267c6a303eb483de8d02db2871afb5c5fc15618d894300b88958f729ad74f"},
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:840f0c7f194986a63d2c2465ca63af8ccbbc90ab1c6001b1978f05119b5e7334"},
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:024cfe1fc7c7f4e1aff4a81e718109e13409767e4f871443cbff3dba3578203d"},
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-win32.whl", hash = "sha256:c69212f63169ec1cfc9bb44723bf2917cbbd8f6191a00ef3410f5a7fe300722d"},
+ {file = "ruamel.yaml.clib-0.2.8-cp310-cp310-win_amd64.whl", hash = "sha256:cabddb8d8ead485e255fe80429f833172b4cadf99274db39abc080e068cbcc31"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:bef08cd86169d9eafb3ccb0a39edb11d8e25f3dae2b28f5c52fd997521133069"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-macosx_13_0_arm64.whl", hash = "sha256:b16420e621d26fdfa949a8b4b47ade8810c56002f5389970db4ddda51dbff248"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl", hash = "sha256:25c515e350e5b739842fc3228d662413ef28f295791af5e5110b543cf0b57d9b"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-manylinux_2_24_aarch64.whl", hash = "sha256:1707814f0d9791df063f8c19bb51b0d1278b8e9a2353abbb676c2f685dee6afe"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:46d378daaac94f454b3a0e3d8d78cafd78a026b1d71443f4966c696b48a6d899"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:09b055c05697b38ecacb7ac50bdab2240bfca1a0c4872b0fd309bb07dc9aa3a9"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-win32.whl", hash = "sha256:53a300ed9cea38cf5a2a9b069058137c2ca1ce658a874b79baceb8f892f915a7"},
+ {file = "ruamel.yaml.clib-0.2.8-cp311-cp311-win_amd64.whl", hash = "sha256:c2a72e9109ea74e511e29032f3b670835f8a59bbdc9ce692c5b4ed91ccf1eedb"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:ebc06178e8821efc9692ea7544aa5644217358490145629914d8020042c24aa1"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-macosx_13_0_arm64.whl", hash = "sha256:edaef1c1200c4b4cb914583150dcaa3bc30e592e907c01117c08b13a07255ec2"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:d176b57452ab5b7028ac47e7b3cf644bcfdc8cacfecf7e71759f7f51a59e5c92"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-manylinux_2_24_aarch64.whl", hash = "sha256:1dc67314e7e1086c9fdf2680b7b6c2be1c0d8e3a8279f2e993ca2a7545fecf62"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-musllinux_1_1_i686.whl", hash = "sha256:3213ece08ea033eb159ac52ae052a4899b56ecc124bb80020d9bbceeb50258e9"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:aab7fd643f71d7946f2ee58cc88c9b7bfc97debd71dcc93e03e2d174628e7e2d"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-win32.whl", hash = "sha256:5c365d91c88390c8d0a8545df0b5857172824b1c604e867161e6b3d59a827eaa"},
+ {file = "ruamel.yaml.clib-0.2.8-cp312-cp312-win_amd64.whl", hash = "sha256:1758ce7d8e1a29d23de54a16ae867abd370f01b5a69e1a3ba75223eaa3ca1a1b"},
+ {file = "ruamel.yaml.clib-0.2.8-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:a5aa27bad2bb83670b71683aae140a1f52b0857a2deff56ad3f6c13a017a26ed"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:c58ecd827313af6864893e7af0a3bb85fd529f862b6adbefe14643947cfe2942"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-macosx_12_0_arm64.whl", hash = "sha256:f481f16baec5290e45aebdc2a5168ebc6d35189ae6fea7a58787613a25f6e875"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_24_aarch64.whl", hash = "sha256:77159f5d5b5c14f7c34073862a6b7d34944075d9f93e681638f6d753606c6ce6"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:7f67a1ee819dc4562d444bbafb135832b0b909f81cc90f7aa00260968c9ca1b3"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-musllinux_1_1_i686.whl", hash = "sha256:4ecbf9c3e19f9562c7fdd462e8d18dd902a47ca046a2e64dba80699f0b6c09b7"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-musllinux_1_1_x86_64.whl", hash = "sha256:87ea5ff66d8064301a154b3933ae406b0863402a799b16e4a1d24d9fbbcbe0d3"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-win32.whl", hash = "sha256:75e1ed13e1f9de23c5607fe6bd1aeaae21e523b32d83bb33918245361e9cc51b"},
+ {file = "ruamel.yaml.clib-0.2.8-cp37-cp37m-win_amd64.whl", hash = "sha256:3f215c5daf6a9d7bbed4a0a4f760f3113b10e82ff4c5c44bec20a68c8014f675"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:1b617618914cb00bf5c34d4357c37aa15183fa229b24767259657746c9077615"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-macosx_12_0_arm64.whl", hash = "sha256:a6a9ffd280b71ad062eae53ac1659ad86a17f59a0fdc7699fd9be40525153337"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-manylinux_2_24_aarch64.whl", hash = "sha256:305889baa4043a09e5b76f8e2a51d4ffba44259f6b4c72dec8ca56207d9c6fe1"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:700e4ebb569e59e16a976857c8798aee258dceac7c7d6b50cab63e080058df91"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:e2b4c44b60eadec492926a7270abb100ef9f72798e18743939bdbf037aab8c28"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:e79e5db08739731b0ce4850bed599235d601701d5694c36570a99a0c5ca41a9d"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-win32.whl", hash = "sha256:955eae71ac26c1ab35924203fda6220f84dce57d6d7884f189743e2abe3a9fbe"},
+ {file = "ruamel.yaml.clib-0.2.8-cp38-cp38-win_amd64.whl", hash = "sha256:56f4252222c067b4ce51ae12cbac231bce32aee1d33fbfc9d17e5b8d6966c312"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:03d1162b6d1df1caa3a4bd27aa51ce17c9afc2046c31b0ad60a0a96ec22f8001"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:bba64af9fa9cebe325a62fa398760f5c7206b215201b0ec825005f1b18b9bccf"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_24_aarch64.whl", hash = "sha256:a1a45e0bb052edf6a1d3a93baef85319733a888363938e1fc9924cb00c8df24c"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:da09ad1c359a728e112d60116f626cc9f29730ff3e0e7db72b9a2dbc2e4beed5"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:184565012b60405d93838167f425713180b949e9d8dd0bbc7b49f074407c5a8b"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:a75879bacf2c987c003368cf14bed0ffe99e8e85acfa6c0bfffc21a090f16880"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-win32.whl", hash = "sha256:84b554931e932c46f94ab306913ad7e11bba988104c5cff26d90d03f68258cd5"},
+ {file = "ruamel.yaml.clib-0.2.8-cp39-cp39-win_amd64.whl", hash = "sha256:25ac8c08322002b06fa1d49d1646181f0b2c72f5cbc15a85e80b4c30a544bb15"},
+ {file = "ruamel.yaml.clib-0.2.8.tar.gz", hash = "sha256:beb2e0404003de9a4cab9753a8805a8fe9320ee6673136ed7f04255fe60bb512"},
+]
+
[[package]]
name = "sgmllib3k"
version = "1.0.0"
@@ -795,7 +989,22 @@ secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.
socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
zstd = ["zstandard (>=0.18.0)"]
+[[package]]
+name = "zipp"
+version = "3.17.0"
+description = "Backport of pathlib-compatible object wrapper for zip files"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
+ {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
+]
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+
[metadata]
lock-version = "2.0"
python-versions = ">=3.11,<3.13"
-content-hash = "eb33b534eafe8f673727680af356d1c796bc952e091a17618eea68b81deea73d"
+content-hash = "c9d8bd4f2e93c88fa1a35ac2920570b033a8066b17dc2580f1544d807a94372e"
diff --git a/packages/df-wiki-cli/pyproject.toml b/packages/df-wiki-cli/pyproject.toml
index b73bacdc54951e6b83c19b69e84c6508efc5c7f0..1ff1b2b8909fc0236c9f68a81efd98cf468e9638 100644
--- a/packages/df-wiki-cli/pyproject.toml
+++ b/packages/df-wiki-cli/pyproject.toml
@@ -1,6 +1,6 @@
[tool.poetry]
name = "df-wiki-cli"
-version = "0.1.0"
+version = "0.1.1"
description = ""
authors = ["Remi PLANEL <rplanel@pasteur.fr>"]
readme = "README.md"
@@ -15,6 +15,8 @@ pandas = "^2.1.2"
requests = "^2.31.0"
meilisearch = "^0.28.4"
pydantic = "^2.4.2"
+pydantic-yaml = "^1.2.0"
+python-frontmatter = "^1.0.1"
[tool.poetry.group.dev.dependencies]
@@ -26,4 +28,4 @@ requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
[tool.poetry.scripts]
-df-wiki-cli = "df_wiki_cli.main:app"
\ No newline at end of file
+df-wiki-cli = "df_wiki_cli.main:app"