From c81fe6bdd2cab7cc2be0858bfd83fbc42de76473 Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Mon, 5 Feb 2024 17:43:51 +0100
Subject: [PATCH] add Assembly
---
components/content/RefseqDb.vue | 18 ++++++++++++++----
1 file changed, 14 insertions(+), 4 deletions(-)
diff --git a/components/content/RefseqDb.vue b/components/content/RefseqDb.vue
index b5e33f87..230e0dce 100644
--- a/components/content/RefseqDb.vue
+++ b/components/content/RefseqDb.vue
@@ -109,16 +109,13 @@ const scaleTypes = ref<string[]>(['linear', 'sqrt', 'log', 'symlog'])
const selectedTaxoRank = ref("Superkingdom");
const headers = ref([
- { title: "Assembly", key: "Assembly" },
-
- { title: "Replicon", key: "replicon" },
{
title: "System",
key: "type",
fixed: true
},
+ { title: "Assembly", key: "Assembly" },
{ title: "Replicon", key: "replicon" },
-
{
title: "Subsystem",
key: "subtype",
@@ -581,7 +578,20 @@ async function downloadPng(component: ComponentPublicInstance | null, filename:
item.type }}
</v-chip>
</template>
+ <template #[`item.Assembly`]="{ item }">
+ <v-chip color="info" link size="small"
+ :href="`https://www.ncbi.nlm.nih.gov/datasets/genome/${item.Assembly}`" target="_blank"> {{
+ item.Assembly }}
+ </v-chip>
+ </template>
+ <template #[`item.replicon`]="{ item }">
+ <v-chip color="info" link size="small"
+ :href="`https://www.ncbi.nlm.nih.gov/nuccore/${item.replicon}`" target="_blank"> {{
+ item.replicon }}
+ </v-chip>
+ </template>
+ <!-- -->
<template #[`item.subtype`]="{ item }">
<v-chip color="info" link size="small" :to="`/defense-systems/${item.type.toLowerCase()}`"
target="_blank"> {{
--
GitLab