diff --git a/components/content/ProseImg.vue b/components/content/ProseImg.vue
index 55d8d853479ad6733b7c79f1f5d6c285375dc03d..57853e66b6f9c35ea6e7134e6e97a9d3a57f5d50 100644
--- a/components/content/ProseImg.vue
+++ b/components/content/ProseImg.vue
@@ -1,5 +1,8 @@
<template>
- <v-img :src="refinedSrc" :alt="alt" :width="width" :height="height"></v-img>
+ <v-card flat color="transparent" class="d-flex justify-center">
+ <v-img :src="refinedSrc" :alt="alt" :width="width" :height="height" :max-width="maxWidth"
+ content-class="d-flex justify-center"></v-img>
+ </v-card>
</template>
<script setup lang="ts">
@@ -19,6 +22,10 @@ const props = defineProps({
type: [String, Number],
default: undefined
},
+ maxWidth: {
+ type: [String, Number],
+ default: undefined
+ },
height: {
type: [String, Number],
default: undefined
@@ -34,5 +41,4 @@ const refinedSrc = computed(() => {
}
return props.src
})
-</script>
-
\ No newline at end of file
+</script>
\ No newline at end of file
diff --git a/content/2.defense-systems/abi2.md b/content/2.defense-systems/abi2.md
index 351668ba0d0859d8cafc802204b3a636c43e579d..ca92286d5a42166fcbd477479faec67a2e709dcf 100644
--- a/content/2.defense-systems/abi2.md
+++ b/content/2.defense-systems/abi2.md
@@ -1,27 +1,24 @@
----
-title: Abi2
----
-
-## Example of genomic structure
-
-The Abi2 system is composed of one protein: Abi_2.
-
-Here is an example found in the RefSeq database:
-
-
-
-Abi2 system in the genome of *Clostridium butyricum* (GCF_014131795.1) is composed of 1 protein: Abi_2 (WP_035763709.1).
-
-## Distribution of the system among prokaryotes
-
-The Abi2 system is present in a total of 176 different species.
-
-Among the 22k complete genomes of RefSeq, this system is present in 1210 genomes (5.3 %).
-
-
-
-
-*Proportion of genome encoding the Abi2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
-
-## Relevant abstracts
-
+---
+title: Abi2
+---
+
+The Abi2 system is composed of one protein: Abi_2.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Abi2 system in the genome of *Clostridium butyricum* (GCF_014131795.1) is composed of 1 protein: Abi_2 (WP_035763709.1).
+
+## Distribution of the system among prokaryotes
+
+The Abi2 system is present in a total of 176 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1210 genomes (5.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Abi2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
diff --git a/content/2.defense-systems/abia.md b/content/2.defense-systems/abia.md
index ea5fc81f4dd62e55d6c94e9568a3e85f34126888..1c086536cafea19ed76e08b724046d08d3119f0f 100644
--- a/content/2.defense-systems/abia.md
+++ b/content/2.defense-systems/abia.md
@@ -1,18 +1,18 @@
-# AbiA
-
-## Example of genomic structure
+---
+title: AbiA
+---
The AbiA system have been describe in a total of 2 subsystems.
Here is some example found in the RefSeq database:
-
+{max-width=750px}
AbiA_large subsystem in the genome of *Lactobacillus amylovorus* (GCF_002706375.1) is composed of 1 protein: AbiA_large (WP_056940268.1).
-
+{max-width=750px}
-AbiA_small subsystem in the genome of *Mesobacillus foraminis* (GCF\_003667765.1) is composed of 2 proteins: AbiA\_small (WP\_121614402.1)and, AbiA\_SLATT (WP\_121614403.1).
+AbiA_small subsystem in the genome of *Mesobacillus foraminis* (GCF_003667765.1) is composed of 2 proteins: AbiA_small (WP_121614402.1)and, AbiA_SLATT (WP_121614403.1).
## Distribution of the system among prokaryotes
@@ -20,9 +20,9 @@ The AbiA system is present in a total of 35 different species.
Among the 22k complete genomes of RefSeq, this system is present in 50 genomes (0.2 %).
-
+{max-width=750px}
-*Proportion of genome encoding the AbiA system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+*Proportion of genome encoding the AbiA system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
## Experimental validation
@@ -32,24 +32,12 @@ A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect aga
## Relevant abstracts
-
::article-doi-list
---
items:
- - 10.1016/j.mib.2005.06.006
- 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
- 10.1093/nar/gkac467
+
---
::
-
-<!-- 10.1016/j.mib.2005.06.006 -->
-
-**Chopin, M.-C., Chopin, A. & Bidnenko, E. Phage abortive infection in lactococci: variations on a theme. Curr Opin Microbiol 8, 473-479 (2005).**
-Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
-
-**Forde, A. & Fitzgerald, G. F. Bacteriophage defence systems in lactic acid bacteria. Antonie Van Leeuwenhoek 76, 89-113 (1999).**
-The study of the interactions between lactic acid bacteria and their bacteriophages has been a vibrant and rewarding research activity for a considerable number of years. In the more recent past, the application of molecular genetics for the analysis of phage-host relationships has contributed enormously to the unravelling of specific events which dictate insensitivity to bacteriophage infection and has revealed that while they are complex and intricate in nature, they are also extremely effective. In addition, the strategy has laid solid foundations for the construction of phage resistant strains for use in commercial applications and has provided a sound basis for continued investigations into existing, naturally-derived and novel, genetically-engineered defence systems. Of course, it has also become clear that phage particles are highly dynamic in their response to those defence systems which they do encounter and that they can readily adapt to them as a consequence of their genetic flexibility and plasticity. This paper reviews the exciting developments that have been described in the literature regarding the study of phage-host interactions in lactic acid bacteria and the innovative approaches that can be taken to exploit this basic information for curtailing phage infection.
-
-**Mestre, M. R. et al. UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions. Nucleic Acids Research 50, 6084-6101 (2022).**
-Reverse transcriptases (RTs) are enzymes capable of synthesizing DNA using RNA as a template. Within the last few years, a burst of research has led to the discovery of novel prokaryotic RTs with diverse antiviral properties, such as DRTs (Defense-associated RTs), which belong to the so-called group of unknown RTs (UG) and are closely related to the Abortive Infection system (Abi) RTs. In this work, we performed a systematic analysis of UG and Abi RTs, increasing the number of UG/Abi members up to 42 highly diverse groups, most of which are predicted to be functionally associated with other gene(s) or domain(s). Based on this information, we classified these systems into three major classes. In addition, we reveal that most of these groups are associated with defense functions and/or mobile genetic elements, and demonstrate the antiphage role of four novel groups. Besides, we highlight the presence of one of these systems in novel families of human gut viruses infecting members of the Bacteroidetes and Firmicutes phyla. This work lays the foundation for a comprehensive and unified understanding of these highly diverse RTs with enormous biotechnological potential.
-
diff --git a/content/2.defense-systems/abib.md b/content/2.defense-systems/abib.md
new file mode 100644
index 0000000000000000000000000000000000000000..e3bfe66954185a5ed143fc7fc340a3dd29f09cd9
--- /dev/null
+++ b/content/2.defense-systems/abib.md
@@ -0,0 +1,38 @@
+---
+title: AbiB
+---
+
+The AbiB system is composed of one protein: AbiB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiB system in the genome of *Lactococcus lactis* (GCF_020221755.1) is composed of 1 protein: AbiB (WP_047687114.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiB system is present in a total of 5 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 13 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiB system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiB systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abic.md b/content/2.defense-systems/abic.md
new file mode 100644
index 0000000000000000000000000000000000000000..1a332dd703fb4349ce52be7e0b2e496de78b7d79
--- /dev/null
+++ b/content/2.defense-systems/abic.md
@@ -0,0 +1,44 @@
+---
+title: AbiC
+---
+
+The AbiC system is composed of one protein: AbiC.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiC system in the genome of *Enterococcus faecium* (GCF_012933295.2) is composed of 1 protein: AbiC (WP_098388098.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiC system is present in a total of 110 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 196 genomes (0.9 %).
+
+{max-width="750"}
+
+*Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiC systems were experimentally validated using:
+
+A system from *Klebsiella pneumoniae's PICI (KpCIFDAARGOS_1313)* in *Escherichia coli* has an anti-phage effect against T5, Lambda, HK97, HK544, HK578, T7 (Fillol-Salom et al., 2022)
+
+A system from *Klebsiella pneumoniae's PICI (KpCIFDAARGOS_1313)* in *Salmonella enterica* has an anti-phage effect against P22, BTP1, ES18 (Fillol-Salom et al., 2022)
+
+A system from *Klebsiella pneumoniae's PICI (KpCIFDAARGOS_1313)* in *Klebsiella pneumoniae* has an anti-phage effect against Pokey, Raw, Eggy (Fillol-Salom et al., 2022)
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, P335 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abid.md b/content/2.defense-systems/abid.md
new file mode 100644
index 0000000000000000000000000000000000000000..d42808628c3b7aea0d4b17d161ac0064b0937bc1
--- /dev/null
+++ b/content/2.defense-systems/abid.md
@@ -0,0 +1,38 @@
+---
+title: AbiD
+---
+
+The AbiD system is composed of one protein: AbiD.
+
+Here is an example found in the RefSeq database:
+
+{max-width="750"}
+
+AbiD system in the genome of *Lachnospira eligens* (GCF_020735745.1) is composed of 1 protein: AbiD (WP_041688924.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiD system is present in a total of 874 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2748 genomes (12.1 %).
+
+{max-width="750"}
+
+*Proportion of genome encoding the AbiD system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiD systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2, P335 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abie.md b/content/2.defense-systems/abie.md
index 7d9fb3716887ed135d9ac499bc6f2fb3b4f00e63..d24eab506197300838532a01a5b342877c76b642 100644
--- a/content/2.defense-systems/abie.md
+++ b/content/2.defense-systems/abie.md
@@ -1,54 +1,51 @@
----
-title: AbiE
----
-
-## Description
-
-AbiE is a family of an anti-phage defense systems. They act through a Toxin-Antitoxin mechanism, and are comprised of a pair of genes, with one gene being toxic while the other confers immunity to this toxicity.Â
-
-It is classified as an Abortive infection system.
-
-## Molecular mechanism
-
-AbiE systems are encoded by two mandatory genes, abiEi and abiEii (1,2).  The latter encodes for AbiEii, a GTP-binding nucleotidyltransferase (NTase) which expression induce a reversible growth arrest.  On the other hand, abiEi encodes for a AbiEi a transcriptional autorepressor that  binds to the promoter of the abiE operon.
-
-Based on this mechanisms, AbiE systems are classified as Type IV Toxin-Antitoxin system, where the antitoxin and toxin are both proteins that do not directly interact with each other.
-
-## Example of genomic structure
-
-The AbiE system is composed of 2 proteins: AbiEi_1 and, AbiEii.
-
-Here is an example found in the RefSeq database:
-
-
-
-
-AbiE system in the genome of *Desulfuromonas versatilis* (GCF\_019704135.1) is composed of 2 proteins: AbiEi\_1 (WP\_221251730.1)and, AbiEii (WP\_221251731.1).
-
-## Distribution of the system among prokaryotes
-
-The AbiE system is present in a total of 962 different species.
-
-Among the 22k complete genomes of RefSeq, this system is present in 3742 genomes (16.4 %).
-
-
-
-*Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
-
-## Experimental validation
-
-AbiE systems were experimentally validated using:
-
-A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936 (Chopin et al., 2005)
-
-## Relevant abstracts
-
-**Chopin, M.-C., Chopin, A. & Bidnenko, E. Phage abortive infection in lactococci: variations on a theme. Curr Opin Microbiol 8, 473-479 (2005).**
-Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
-
-**Dy, R. L., Przybilski, R., Semeijn, K., Salmond, G. P. C. & Fineran, P. C. A widespread bacteriophage abortive infection system functions through a Type IV toxin-antitoxin mechanism. Nucleic Acids Res 42, 4590-4605 (2014).**
-Bacterial abortive infection (Abi) systems are 'altruistic' cell death systems that are activated by phage infection and limit viral replication, thereby providing protection to the bacterial population. Here, we have used a novel approach of screening Abi systems as a tool to identify and characterize toxin-antitoxin (TA)-acting Abi systems. We show that AbiE systems are encoded by bicistronic operons and function via a non-interacting (Type IV) bacteriostatic TA mechanism. The abiE operon was negatively autoregulated by the antitoxin, AbiEi, a member of a widespread family of putative transcriptional regulators. AbiEi has an N-terminal winged-helix-turn-helix domain that is required for repression of abiE transcription, and an uncharacterized bi-functional C-terminal domain, which is necessary for transcriptional repression and sufficient for toxin neutralization. The cognate toxin, AbiEii, is a predicted nucleotidyltransferase (NTase) and member of the DNA polymerase ? family. AbiEii specifically bound GTP, and mutations in conserved NTase motifs (I-III) and a newly identified motif (IV), abolished GTP binding and subsequent toxicity. The AbiE systems can provide phage resistance and enable stabilization of mobile genetic elements, such as plasmids. Our study reveals molecular insights into the regulation and function of the widespread bi-functional AbiE Abi-TA systems and the biochemical properties of both toxin and antitoxin proteins.
-
-**Forde, A. & Fitzgerald, G. F. Bacteriophage defence systems in lactic acid bacteria. Antonie Van Leeuwenhoek 76, 89-113 (1999).**
-The study of the interactions between lactic acid bacteria and their bacteriophages has been a vibrant and rewarding research activity for a considerable number of years. In the more recent past, the application of molecular genetics for the analysis of phage-host relationships has contributed enormously to the unravelling of specific events which dictate insensitivity to bacteriophage infection and has revealed that while they are complex and intricate in nature, they are also extremely effective. In addition, the strategy has laid solid foundations for the construction of phage resistant strains for use in commercial applications and has provided a sound basis for continued investigations into existing, naturally-derived and novel, genetically-engineered defence systems. Of course, it has also become clear that phage particles are highly dynamic in their response to those defence systems which they do encounter and that they can readily adapt to them as a consequence of their genetic flexibility and plasticity. This paper reviews the exciting developments that have been described in the literature regarding the study of phage-host interactions in lactic acid bacteria and the innovative approaches that can be taken to exploit this basic information for curtailing phage infection.
-
+---
+title: AbiE
+---
+
+AbiE is a family of an anti-phage defense systems. They act through a Toxin-Antitoxin mechanism, and are comprised of a pair of genes, with one gene being toxic while the other confers immunity to this toxicity.Â
+
+It is classified as an Abortive infection system.
+
+## Molecular mechanism
+
+AbiE systems are encoded by two mandatory genes, abiEi and abiEii (1,2).  The latter encodes for AbiEii, a GTP-binding nucleotidyltransferase (NTase) which expression induce a reversible growth arrest.  On the other hand, abiEi encodes for a AbiEi a transcriptional autorepressor that  binds to the promoter of the abiE operon.
+
+Based on this mechanisms, AbiE systems are classified as Type IV Toxin-Antitoxin system, where the antitoxin and toxin are both proteins that do not directly interact with each other.
+
+## Example of genomic structure
+
+The AbiE system is composed of 2 proteins: AbiEi_1 and, AbiEii.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiE system in the genome of *Desulfuromonas versatilis* (GCF_019704135.1) is composed of 2 proteins: AbiEi_1 (WP_221251730.1)and, AbiEii (WP_221251731.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiE system is present in a total of 962 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 3742 genomes (16.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiE systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+ - 10.1093/nar/gkt1419
+
+---
+::
diff --git a/content/2.defense-systems/abig.md b/content/2.defense-systems/abig.md
new file mode 100644
index 0000000000000000000000000000000000000000..1f46ad07164fcf37eab985ea78bc1d532543f0d5
--- /dev/null
+++ b/content/2.defense-systems/abig.md
@@ -0,0 +1,38 @@
+---
+title: AbiG
+---
+
+The AbiG system is composed of 2 proteins: AbiGi and, AbiGii.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiG system in the genome of *Streptococcus mutans* (GCF_009738105.1) is composed of 2 proteins: AbiGi (WP_002266883.1)and, AbiGii (WP_002266884.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiG system is present in a total of 23 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 33 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiG system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiG systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2, P335 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abih.md b/content/2.defense-systems/abih.md
new file mode 100644
index 0000000000000000000000000000000000000000..d304055220068389440e7c89e3cca6cee7266d71
--- /dev/null
+++ b/content/2.defense-systems/abih.md
@@ -0,0 +1,41 @@
+---
+title: AbiH
+---
+
+## Example of genomic structure
+
+The AbiH system is composed of one protein: AbiH.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiH system in the genome of *Agrobacterium tumefaciens* (GCF_005221405.1) is composed of 1 protein: AbiH (WP_045021548.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiH system is present in a total of 408 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1277 genomes (5.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiH system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiH systems were experimentally validated using:
+
+A system from *lactococci* in *lactococci* has an anti-phage effect against 936, c2 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+ - 10.1111/j.1574-6968.1996.tb08446.x
+
+---
+::
diff --git a/content/2.defense-systems/abii.md b/content/2.defense-systems/abii.md
new file mode 100644
index 0000000000000000000000000000000000000000..29cf153b50b9558a9ff06434cb647c58fabc6abf
--- /dev/null
+++ b/content/2.defense-systems/abii.md
@@ -0,0 +1,40 @@
+---
+title: AbiI
+---
+
+## Example of genomic structure
+
+The AbiI system is composed of one protein: AbiI.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiI system in the genome of *Enterococcus faecalis* (GCF_002814115.1) is composed of 1 protein: AbiI (WP_002367720.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiI system is present in a total of 8 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiI system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiI systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abij.md b/content/2.defense-systems/abij.md
new file mode 100644
index 0000000000000000000000000000000000000000..c0fda6f50622e696079136ddb9ef8a9b2b88640b
--- /dev/null
+++ b/content/2.defense-systems/abij.md
@@ -0,0 +1,40 @@
+---
+title: AbiJ
+---
+
+## Example of genomic structure
+
+The AbiJ system is composed of one protein: AbiJ.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiJ system in the genome of *Loigolactobacillus backii* (GCF_001663735.1) is composed of 1 protein: AbiJ (WP_068377534.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiJ system is present in a total of 321 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 807 genomes (3.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiJ system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiJ systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abik.md b/content/2.defense-systems/abik.md
new file mode 100644
index 0000000000000000000000000000000000000000..03e4a8ad8e681f0858a10868617325b823483b38
--- /dev/null
+++ b/content/2.defense-systems/abik.md
@@ -0,0 +1,41 @@
+---
+title: AbiK
+---
+
+## Example of genomic structure
+
+The AbiK system is composed of one protein: AbiK.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiK system in the genome of *Lactococcus lactis* (GCF_002078995.2) is composed of 1 protein: AbiK (WP_081199340.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiK system is present in a total of 32 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 107 genomes (0.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiK system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiK systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2, P335 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+ - 10.1093/nar/gkac467
+
+---
+::
diff --git a/content/2.defense-systems/abil.md b/content/2.defense-systems/abil.md
new file mode 100644
index 0000000000000000000000000000000000000000..1acfc57263796a1926f67d2197f52c56bd104bed
--- /dev/null
+++ b/content/2.defense-systems/abil.md
@@ -0,0 +1,40 @@
+---
+title: AbiL
+---
+
+## Example of genomic structure
+
+The AbiL system is composed of 2 proteins: AbiLii2 and, AbiLi2.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiL system in the genome of *Fusobacterium nucleatum* (GCF_003019785.1) is composed of 2 proteins: AbiLii2 (WP_005903821.1)and, AbiLi2 (WP_005903823.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiL system is present in a total of 456 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 783 genomes (3.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiL system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiL systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abin.md b/content/2.defense-systems/abin.md
new file mode 100644
index 0000000000000000000000000000000000000000..fbe6d414db94ae241f18aec3f6da047ffd4911ed
--- /dev/null
+++ b/content/2.defense-systems/abin.md
@@ -0,0 +1,40 @@
+---
+title: AbiN
+---
+
+## Example of genomic structure
+
+The AbiN system is composed of one protein: AbiN.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiN system in the genome of *Enterococcus faecalis* (GCF_016743895.1) is composed of 1 protein: AbiN (WP_002384355.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiN system is present in a total of 51 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 167 genomes (0.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiN system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiN systems were experimentally validated using:
+
+A system from *lactococcal prophage* in *lactococci* has an anti-phage effect against 936, c2 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abio.md b/content/2.defense-systems/abio.md
new file mode 100644
index 0000000000000000000000000000000000000000..6ca858e86b76a8fe95e25bbe3ae10443c8f8fbf9
--- /dev/null
+++ b/content/2.defense-systems/abio.md
@@ -0,0 +1,40 @@
+---
+title: AbiO
+---
+
+## Example of genomic structure
+
+The AbiO system is composed of one protein: AbiO.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiO system in the genome of *Pasteurella multocida* (GCF_016313205.1) is composed of 1 protein: AbiO (WP_005752771.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiO system is present in a total of 67 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 109 genomes (0.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiO system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiO systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abip2.md b/content/2.defense-systems/abip2.md
new file mode 100644
index 0000000000000000000000000000000000000000..014c1d0229fa09e4c207a2c7cb0e1f9f0dbfc09f
--- /dev/null
+++ b/content/2.defense-systems/abip2.md
@@ -0,0 +1,43 @@
+---
+title: AbiP2
+---
+
+## Example of genomic structure
+
+The AbiP2 system is composed of one protein: AbiP2.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiP2 system in the genome of *Casimicrobium huifangae* (GCF_009746125.1) is composed of 1 protein: AbiP2 (WP_156862066.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiP2 system is present in a total of 98 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 299 genomes (1.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiP2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiP2 systems were experimentally validated using:
+
+Subsystem RT-Abi-P2 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5 (Gao et al., 2020)
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+ - 10.1093/nar/gkac467
+
+---
+::
diff --git a/content/2.defense-systems/abiq.md b/content/2.defense-systems/abiq.md
new file mode 100644
index 0000000000000000000000000000000000000000..f7d012e175a23a44f46d2830db464394cbadee18
--- /dev/null
+++ b/content/2.defense-systems/abiq.md
@@ -0,0 +1,41 @@
+---
+title: AbiQ
+---
+
+## Example of genomic structure
+
+The AbiQ system is composed of one protein: AbiQ.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiQ system in the genome of *Enterococcus sp.* (GCF_003812305.1) is composed of 1 protein: AbiQ (WP_123866849.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiQ system is present in a total of 110 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 262 genomes (1.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiQ system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiQ systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+ - 10.1128/AEM.64.12.4748-4756.1998
+
+---
+::
diff --git a/content/2.defense-systems/abir.md b/content/2.defense-systems/abir.md
new file mode 100644
index 0000000000000000000000000000000000000000..0d1b43c104e27a80b6814af82922e122a54c13ce
--- /dev/null
+++ b/content/2.defense-systems/abir.md
@@ -0,0 +1,40 @@
+---
+title: AbiR
+---
+
+## Example of genomic structure
+
+The AbiR system is composed of 3 proteins: AbiRc, AbiRb and, AbiRa.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiR system in the genome of *Pediococcus pentosaceus* (GCF_019614475.1) is composed of 3 proteins: AbiRa (WP_220689027.1), AbiRb (WP_011673124.1)and, AbiRc (WP_011673125.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiR system is present in a total of 31 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 56 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiR systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against c2 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abit.md b/content/2.defense-systems/abit.md
new file mode 100644
index 0000000000000000000000000000000000000000..218159460f7a824d57241593fac3209762e7b78c
--- /dev/null
+++ b/content/2.defense-systems/abit.md
@@ -0,0 +1,40 @@
+---
+title: AbiT
+---
+
+## Example of genomic structure
+
+The AbiT system is composed of 2 proteins: AbiTii and, AbiTi.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiT system in the genome of *Sphaerochaeta associata* (GCF_022869165.1) is composed of 2 proteins: AbiTi (WP_244771454.1)and, AbiTii (WP_244771455.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiT system is present in a total of 5 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiT system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiT systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, P335 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abiu.md b/content/2.defense-systems/abiu.md
new file mode 100644
index 0000000000000000000000000000000000000000..abf4943750165fc608270a0b19c40d12268ec81b
--- /dev/null
+++ b/content/2.defense-systems/abiu.md
@@ -0,0 +1,40 @@
+---
+title: AbiU
+---
+
+## Example of genomic structure
+
+The AbiU system is composed of one protein: AbiU.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiU system in the genome of *Fulvivirga lutea* (GCF_017068455.1) is composed of 1 protein: AbiU (WP_205721428.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiU system is present in a total of 390 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1017 genomes (4.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiU system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiU systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2, P335 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1016/j.mib.2005.06.006
+
+---
+::
diff --git a/content/2.defense-systems/abiv.md b/content/2.defense-systems/abiv.md
new file mode 100644
index 0000000000000000000000000000000000000000..a8f2a98514d6922ad53e88fc74bf7d96b9027419
--- /dev/null
+++ b/content/2.defense-systems/abiv.md
@@ -0,0 +1,40 @@
+---
+title: AbiV
+---
+
+## Example of genomic structure
+
+The AbiV system is composed of one protein: AbiV.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiV system in the genome of *Lactococcus cremoris* (GCF_017376415.1) is composed of 1 protein: AbiV (WP_011834704.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiV system is present in a total of 76 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 126 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiV system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiV systems were experimentally validated using:
+
+A system from *Lactococcus lactis* in *Lactococcus lactis* has an anti-phage effect against sk1, p2, jj50, P008, bIL170, c2, bIL67, ml3, eb1 (Haaber et al., 2008)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1128/AEM.00780-08
+
+---
+::
diff --git a/content/2.defense-systems/abiz.md b/content/2.defense-systems/abiz.md
new file mode 100644
index 0000000000000000000000000000000000000000..eaef64217c1c477885c9c3c81f62c08149439bf5
--- /dev/null
+++ b/content/2.defense-systems/abiz.md
@@ -0,0 +1,40 @@
+---
+title: AbiZ
+---
+
+## Example of genomic structure
+
+The AbiZ system is composed of one protein: AbiZ.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+AbiZ system in the genome of *Streptococcus oralis* (GCF_019334565.1) is composed of 1 protein: AbiZ (WP_215804505.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiZ system is present in a total of 191 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 831 genomes (3.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiZ systems were experimentally validated using:
+
+A system from *Lactococcus lactis* in *Lactococcus lactis* has an anti-phage effect against Phi31.2, ul36, phi31, phi48, phi31.1, Q30, Q36, Q33, phi50, phi48 (Durmaz et al., 2007)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1023/A:1002027321171
+ - 10.1128/JB.00904-06
+
+---
+::
diff --git a/content/2.defense-systems/aditi.md b/content/2.defense-systems/aditi.md
new file mode 100644
index 0000000000000000000000000000000000000000..84d983b3be9a0a27d80b920bb69c7d1893147160
--- /dev/null
+++ b/content/2.defense-systems/aditi.md
@@ -0,0 +1,39 @@
+---
+title: Aditi
+---
+
+## Example of genomic structure
+
+The Aditi system is composed of 2 proteins: DitB and, DitA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Aditi system in the genome of *Fusobacterium hwasookii* (GCF_001455105.1) is composed of 2 proteins: DitB (WP_029491896.1)and, DitA (WP_029491897.1).
+
+## Distribution of the system among prokaryotes
+
+The Aditi system is present in a total of 18 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 40 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Aditi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Aditi systems were experimentally validated using:
+
+A system from *Saccharibacillus kuerlensis* in *Bacillus subtilis* has an anti-phage effect against phi105, Rho14, SPP1 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/avast.md b/content/2.defense-systems/avast.md
index 7909a710c29fc096b4daeaef7d483e34df426a66..d58bd1d494003c282c33ab4525de232c23108bf4 100644
--- a/content/2.defense-systems/avast.md
+++ b/content/2.defense-systems/avast.md
@@ -15,28 +15,23 @@ The AVAST system have been describe in a total of 5 subsystems.
Here is some example found in the RefSeq database:
+{max-width=750px}
-
+AVAST_I subsystem in the genome of *Vibrio sp.* (GCF_905175355.1) is composed of 3 proteins: Avs1A (WP_208445041.1), Avs1B (WP_208445042.1)and, Avs1C (WP_108173272.1).
-AVAST_I subsystem in the genome of *Vibrio sp.* (GCF\_905175355.1) is composed of 3 proteins: Avs1A (WP\_208445041.1), Avs1B (WP\_208445042.1)and, Avs1C (WP_108173272.1).
-
-
-
+{max-width=750px}
AVAST_II subsystem in the genome of *Escherichia coli* (GCF_018884505.1) is composed of 1 protein: Avs2A (WP_032199984.1).
-
-
+{max-width=750px}
AVAST_III subsystem in the genome of *Enterobacter cancerogenus* (GCF_002850575.1) is composed of 2 proteins: Avs3B (WP_199559884.1)and, Avs3A (WP_101737373.1).
-
-
+{max-width=750px}
AVAST_IV subsystem in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: Avs4A (WP_000240574.1).
-
-
+{max-width=750px}
AVAST_V subsystem in the genome of *Leclercia adecarboxylata* (GCF_006171285.1) is composed of 1 protein: Avs5A (WP_139565349.1).
@@ -46,58 +41,59 @@ The AVAST system is present in a total of 363 different species.
Among the 22k complete genomes of RefSeq, this system is present in 1046 genomes (4.6 %).
-
+{max-width=750px}
-*Proportion of genome encoding the AVAST system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+*Proportion of genome encoding the AVAST system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
## Experimental validation
AVAST systems were experimentally validated using:
-Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Escherichia coli* has an anti-phage effect against T4, Lambda, HK97, HK544, HK578, T7 (Fillol-Salom et al., 2022)
+Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Escherichia coli* has an anti-phage effect against T4, Lambda, HK97, HK544, HK578, T7 (Fillol-Salom et al., 2022)
-Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Salmonella enterica * has an anti-phage effect against P22, BTP1, ES18, det7 (Fillol-Salom et al., 2022)
+Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Salmonella enterica * has an anti-phage effect against P22, BTP1, ES18, det7 (Fillol-Salom et al., 2022)
-Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Klebsiella pneumoniae * has an anti-phage effect against Pokey (Fillol-Salom et al., 2022)
+Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Klebsiella pneumoniae * has an anti-phage effect against Pokey (Fillol-Salom et al., 2022)
-Subsystem Metallo beta-lactamase + protease + STAND (Type 1) with a system from *Erwinia piriflorinigrans* in *Escherichia coli* has an anti-phage effect against P1 (Gao et al., 2020)
+Subsystem Metallo beta-lactamase + protease + STAND (Type 1) with a system from *Erwinia piriflorinigrans* in *Escherichia coli* has an anti-phage effect against P1 (Gao et al., 2020)
-Subsystem STAND (Type 2) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, P1 (Gao et al., 2020)
+Subsystem STAND (Type 2) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, P1 (Gao et al., 2020)
-Subsystem DUF4297-STAND (Type 3) with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T2, T3, T7, PhiV-1 (Gao et al., 2020)
+Subsystem DUF4297-STAND (Type 3) with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T2, T3, T7, PhiV-1 (Gao et al., 2020)
-Subsystem Mrr-STAND (Type 4) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T3, T7, PhiV-1 (Gao et al., 2020)
+Subsystem Mrr-STAND (Type 4) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T3, T7, PhiV-1 (Gao et al., 2020)
-Subsystem SIR2-STAND (Type 5) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2 (Gao et al., 2020)
+Subsystem SIR2-STAND (Type 5) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2 (Gao et al., 2020)
-Subsystem SeAvs1 with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against P1, ZL-19 (Gao et al., 2022)
+Subsystem SeAvs1 with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against P1, ZL-19 (Gao et al., 2022)
-Subsystem EcAcs1 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against ZL-19 (Gao et al., 2022)
+Subsystem EcAcs1 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against ZL-19 (Gao et al., 2022)
-Subsystem EpAvs1 with a system from *Erwinia piriflorinigrans* in *Escherichia coli* has an anti-phage effect against P1, Lambda, , ZL-19 (Gao et al., 2022)
+Subsystem EpAvs1 with a system from *Erwinia piriflorinigrans* in *Escherichia coli* has an anti-phage effect against P1, Lambda, , ZL-19 (Gao et al., 2022)
-Subsystem SeAvs3 with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
+Subsystem SeAvs3 with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
-Subsystem KvAvs3 with a system from *Klebsiella variicola* in *Escherichia coli* has an anti-phage effect against P1, ZL-19 (Gao et al., 2022)
+Subsystem KvAvs3 with a system from *Klebsiella variicola* in *Escherichia coli* has an anti-phage effect against P1, ZL-19 (Gao et al., 2022)
-Subsystem EcAvs2 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, P1, T4, T5, ZL-19 (Gao et al., 2022)
+Subsystem EcAvs2 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, P1, T4, T5, ZL-19 (Gao et al., 2022)
-Subsystem Ec2Avs2 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1 (Gao et al., 2022)
+Subsystem Ec2Avs2 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1 (Gao et al., 2022)
-Subsystem EcAvs4 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
+Subsystem EcAvs4 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
-Subsystem Ec2Avs4 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
+Subsystem Ec2Avs4 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
-Subsystem KpAvs4 with a system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage effect against ZL-19 (Gao et al., 2022)
+Subsystem KpAvs4 with a system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage effect against ZL-19 (Gao et al., 2022)
-Subsystem CcAvs4 with a system from *Corallococcus coralloides* in *Escherichia coli* has an anti-phage effect against T7 (Gao et al., 2022)
+Subsystem CcAvs4 with a system from *Corallococcus coralloides* in *Escherichia coli* has an anti-phage effect against T7 (Gao et al., 2022)
## Relevant abstracts
::article-doi-list
---
items:
- - 10.1126/science.abm4096
- 10.1126/science.aba0372
+ - 10.1126/science.abm4096
+
---
-::
\ No newline at end of file
+::
diff --git a/content/2.defense-systems/azaca.md b/content/2.defense-systems/azaca.md
new file mode 100644
index 0000000000000000000000000000000000000000..d50b48b1c9694426ae6d11f0df278ef6107a0f7a
--- /dev/null
+++ b/content/2.defense-systems/azaca.md
@@ -0,0 +1,41 @@
+---
+title: Azaca
+---
+
+## Example of genomic structure
+
+The Azaca system is composed of 3 proteins: ZacA, ZacB and, ZacC.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Azaca system in the genome of *Ornithinimicrobium sp.* (GCF_023923205.1) is composed of 3 proteins: ZacA (WP_252620090.1), ZacB (WP_252620091.1)and, ZacC (WP_252620092.1).
+
+## Distribution of the system among prokaryotes
+
+The Azaca system is present in a total of 156 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 206 genomes (0.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Azaca system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Azaca systems were experimentally validated using:
+
+A system from *Bacillus massilioanorexius* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Millman et al., 2022)
+
+A system from *Bacillus massilioanorexius* in *Bacillus subtilis* has an anti-phage effect against SBSphiC (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/borvo.md b/content/2.defense-systems/borvo.md
new file mode 100644
index 0000000000000000000000000000000000000000..9319466037c406e49593b881c7fd8dfd8cbb854f
--- /dev/null
+++ b/content/2.defense-systems/borvo.md
@@ -0,0 +1,39 @@
+---
+title: Borvo
+---
+
+## Example of genomic structure
+
+The Borvo system is composed of one protein: BovA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Borvo system in the genome of *Brevundimonas sp.* (GCF_002002865.1) is composed of 1 protein: BovA_addition (WP_077354142.1).
+
+## Distribution of the system among prokaryotes
+
+The Borvo system is present in a total of 348 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 650 genomes (2.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Borvo system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Borvo systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5, SECphi4, SECphi6, SECphi18 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/brex.md b/content/2.defense-systems/brex.md
new file mode 100644
index 0000000000000000000000000000000000000000..640c57d5d7352edf625954d91472b7d99af0bde3
--- /dev/null
+++ b/content/2.defense-systems/brex.md
@@ -0,0 +1,79 @@
+---
+title: BREX
+---
+
+## Description
+
+BREX (for Bacteriophage Exclusion) is a family of anti-phage defense systems. BREX systems are active against both lytic and lysogenic phages. They allow phage adsorption but block phage DNA replication, and are considered to be [RM](/list_defense_systems/RM)-like systems (1,2). BREX systems are found in around 10% of sequenced microbial genomes (1).
+
+BREX systems can be divided into six subtypes, and are encoded by 4 to 8 genes, some of these genes being mandatory while others are subtype-specific (1).
+
+## Molecular mechanism
+
+*B. cereus* BREX Type 1 system was reported to methylate target motifs in the bacterial genome (1). The methylation activity of this system has been hypothesized to allow for self from non-self discrimination, as it is the case for Restriction-Modification ([RM)](/list_defense_systems/RM) systems.Â
+
+However, the mechanism through which BREX Type 1 systems defend against phages is distinct from RM systems, and does not seem to degrade phage nucleic acids (1).Â
+
+To date, BREX molecular mechanism remains to be described.
+
+
+## Example of genomic structure
+
+The BREX system have been describe in a total of 6 subsystems.
+
+BREX systems necessarily include the pglZ gene (encoding for a putative alkaline phosphatase), which is accompanied by either brxC or pglY. These two genes share only a distant homology but have been hypothesized to fulfill the same function among the different BREX subtypes (1).
+
+Goldfarb and colleagues reported a 6-gene cassette from *Bacillus cereus* as being the model for BREX Type 1. BREX Type 1 are the most widespread BREX systems, and present two core genes (pglZ and brxC).  Four other genes  are associated with BREX Type 1 : *pglX (*encoding for a putative methyltransferase),  *brxA (*encoding an RNA-binding anti-termination protein)*, brxB (*unknown functio*n), brxC (*encoding for a protein with ATP-binding domain) and *brxL* (encoding for a putative protease) (1,2).
+
+Type 2 BREX systems include the system formerly known as Pgl , which is comprised of four genes  (pglW, X, Y, and Z) (3), to which Goldfarb and colleagues found often associated two additional genes (brxD, and brxHI).
+
+Although 4 additional BREX subtypes have been proposed, BREX Type 1 and Type 2 remain the only ones to be experimentally validated. A detailed description of the other subtypes can be found in Goldfarb *et al*., 2015.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+BREX_I subsystem in the genome of *Kaistella sp.* (GCF_020410745.1) is composed of 6 proteins: brxL (WP_226063319.1), pglZA (WP_226063320.1), pglX1 (WP_226063321.1), brxC (WP_226063322.1), brxB_DUF1788 (WP_226063323.1)and, brxA_DUF1819 (WP_226063324.1).
+
+{max-width=750px}
+
+BREX_II subsystem in the genome of *Streptomyces hygroscopicus* (GCF_001447075.1) is composed of 5 proteins: brxD (WP_058082289.1), pglZ2 (WP_058082290.1), pglY (WP_058082291.1), pglX2 (WP_058082292.1)and, pglW (WP_237280966.1).
+
+## Distribution of the system among prokaryotes
+
+The BREX system is present in a total of 732 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1612 genomes (7.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the BREX system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+BREX systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against Lambda (Gao et al., 2020 ; Gordeeva et al., 2017)
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against SPbeta, SP16, Zeta, phi3T, SPO2, SPO1, SP82G (Goldfarb et al., 2015)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1093/nar/gkaa290
+ - 10.1093/nar/gky1125
+ - 10.15252/embj.201489455
+
+---
+::
+
+
+## References
+
+**1. Goldfarb T, Sberro H, Weinstock E, Cohen O, Doron S, Charpak-Amikam Y, Afik S, Ofir G, Sorek R. BREX is a novel phage resistance system widespread in microbial genomes. EMBO J. 2015 Jan 13;34(2):169-83. doi: 10.15252/embj.201489455. Epub 2014 Dec 1. PMID: 25452498; PMCID: PMC4337064.**
+
+**2. Nunes-Alves C. Bacterial physiology: putting the 'BREX' on phage replication. Nat Rev Microbiol. 2015 Mar;13(3):129. doi: 10.1038/nrmicro3437. Epub 2015 Feb 2. PMID: 25639679.**
+
+**3. Sumby P, Smith MC. Phase variation in the phage growth limitation system of Streptomyces coelicolor A3(2). J Bacteriol. 2003;185(15):4558-4563. doi:10.1128/JB.185.15.4558-4563.2003**
diff --git a/content/2.defense-systems/bsta.md b/content/2.defense-systems/bsta.md
new file mode 100644
index 0000000000000000000000000000000000000000..9e141e3a01bd3afdf5e5e960e6cad8c86ae67769
--- /dev/null
+++ b/content/2.defense-systems/bsta.md
@@ -0,0 +1,62 @@
+---
+title: BstA
+---
+
+## Description
+
+BstA is a family of defense systems. BtsA systems from *Salmonella enterica subsp. enterica*, *Klebsiella pneumoniae* and *Escherichia coli* have been shown to provide resistance against a large diversity of phages when expressed in a *S. enterica* or *E.coli* host (1).
+
+The majority of BstA systems appear to be prophage-encoded, as 79% of BstA homologs found in a set of Gram-negative bacterial genomes were associted with phage genes (1).
+
+The defense mechanism encoded by BstA remains to be elucidated. Experimental observation suggest that BtsA could act through an abortive infection mechanism. Fluorescence microscopy experiments suggest that the BstA protein colocalizes with phage DNA. The BstA protein appears to inhibit phage DNA replication during lytic phage infection cycles (1).
+
+Interestingly, part of the BstA locus appears to encode an anti-BstA genetic element (*aba*), which prevents auto-immunity for prophages encoding the BstA locus. The aba element appears to be specific to a given BstA locus, as replacing the aba element from a BstA locus with the aba element from an other BstA system does not prevent auto-immunity (1).Â
+
+## Example of genomic structure
+
+The BstA system is composed of one protein: BstA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+BstA system in the genome of *Providencia rustigianii* (GCF_900635875.1) is composed of 1 protein: BstA (WP_126437212.1).
+
+## Distribution of the system among prokaryotes
+
+The BstA system is present in a total of 81 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 236 genomes (1.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the BstA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+BstA systems were experimentally validated using:
+
+A system from *Salmonella Typhimurium's BTP1 prophage* in *Salmonella Typhimurium* has an anti-phage effect against P22, ES18, 9NA (Owen et al., 2021)
+
+A system from *Salmonella Typhimurium's BTP1 prophage* in *Escherichia coli* has an anti-phage effect against P22, ES18, 9NA (Owen et al., 2021)
+
+A system from *Klebsiella pneumoniae* in *Salmonella Typhimurium* has an anti-phage effect against BTP1, P22, ES18, P22 HT, 9NA, Felix O1 (Owen et al., 2021)
+
+A system from *Escherichia coli* in *Salmonella Typhimurium* has an anti-phage effect against BTP1, P22, ES18, P22 HT, 9NA (Owen et al., 2021)
+
+A system from *Salmonella Typhimurium's BTP1* in *Escherichia coli* has an anti-phage effect against Lambda, Phi80, P1vir, T7 (Owen et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2021.09.002
+
+---
+::
+
+
+## References
+
+1. Owen SV, Wenner N, Dulberger CL, Rodwell EV, Bowers-Barnard A, Quinones-Olvera N, Rigden DJ, Rubin EJ, Garner EC, Baym M, Hinton JCD. Prophages encode phage-defense systems with cognate self-immunity. Cell Host Microbe. 2021 Nov 10;29(11):1620-1633.e8. doi: 10.1016/j.chom.2021.09.002. Epub 2021 Sep 30. PMID: 34597593; PMCID: PMC8585504.
diff --git a/content/2.defense-systems/bunzi.md b/content/2.defense-systems/bunzi.md
new file mode 100644
index 0000000000000000000000000000000000000000..72c1f29f48ef443e11c7691755a7060c318bdfdf
--- /dev/null
+++ b/content/2.defense-systems/bunzi.md
@@ -0,0 +1,39 @@
+---
+title: Bunzi
+---
+
+## Example of genomic structure
+
+The Bunzi system is composed of 2 proteins: BnzB and, BnzA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Bunzi system in the genome of *Mammaliicoccus lentus* (GCF_014070215.1) is composed of 2 proteins: BnzB (WP_107556517.1)and, BnzA (WP_107556516.1).
+
+## Distribution of the system among prokaryotes
+
+The Bunzi system is present in a total of 86 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 286 genomes (1.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Bunzi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Bunzi systems were experimentally validated using:
+
+A system from *Ligilactobacillus animalis* in *Bacillus subtilis* has an anti-phage effect against AR9 (Jumbo), PBS1 (Jumbo) (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/caprel.md b/content/2.defense-systems/caprel.md
new file mode 100644
index 0000000000000000000000000000000000000000..5ee735c55af3e19e17df14871c607f05743f679c
--- /dev/null
+++ b/content/2.defense-systems/caprel.md
@@ -0,0 +1,59 @@
+---
+title: CapRel
+---
+
+## Description
+
+CapRel is a fused toxin–antitoxin system that is active against diverse phages when expressed in *Escherichia coli*. CapRel belongs to the family of toxSAS toxin–antitoxin systems. CapRel is an Abortive infection system which is found in Cyanobacteria, Actinobacteria, and Proteobacteria, Spirochetes, Bacteroidetes, and Firmicutes, as well as in some temperate phages.
+
+## Molecular mechanism
+
+The CapRel system of Salmonella temperate phage SJ46 is normally found in a closed conformation, which is thought to maintain CapRel in an auto-inhibited state. However during phage SECPhi27 infection, binding of the major phage capsid protein (Gp57) to CapRel releases it from is inhibited state, allowing pyrophosphorylation of tRNAs by the toxin domain and resulting in translation inhibition. Other phage capsid proteins can be recognized by CapRel, as observed during infection by phage Bas8.
+
+
+Different CapRel homologues confer defense against different phages, suggesting variable phage specificity of CapRel system which seems to be mediated by the C-terminal region of CapRel.
+
+
+## Example of genomic structure
+
+The CapRel system is composed of one protein: CapRel.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+CapRel system in the genome of *Escherichia coli* (GCF_003856995.1) is composed of 1 protein: CapRel (WP_000526244.1).
+
+## Distribution of the system among prokaryotes
+
+The CapRel system is present in a total of 202 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 407 genomes (1.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the CapRel system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+CapRel systems were experimentally validated using:
+
+A system from *Salmonella phage SJ46* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, RB69, SECphi27 (Zhang et al., 2022)
+
+A system from *Enterobacter chengduensis* in *Escherichia coli* has an anti-phage effect against T7 (Zhang et al., 2022)
+
+A system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage effect against SECphi18 (Zhang et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41586-022-05444-z
+
+---
+::
+
+
+## References
+Zhang T, Tamman H, Coppieters 't Wallant K, Kurata T, LeRoux M, Srikant S, Brodiazhenko T, Cepauskas A, Talavera A, Martens C, Atkinson GC, Hauryliuk V, Garcia-Pino A, Laub MT. Direct activation of a bacterial innate immune system by a viral capsid protein. Nature. 2022 Dec;612(7938):132-140. doi: 10.1038/s41586-022-05444-z. Epub 2022 Nov 16. PMID: 36385533.
\ No newline at end of file
diff --git a/content/2.defense-systems/cbass.md b/content/2.defense-systems/cbass.md
new file mode 100644
index 0000000000000000000000000000000000000000..6782bd6dff9c82d8de03b1cffa3c305970caa8b3
--- /dev/null
+++ b/content/2.defense-systems/cbass.md
@@ -0,0 +1,61 @@
+---
+title: CBASS
+---
+
+## Example of genomic structure
+
+The CBASS system have been describe in a total of 5 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+CBASS_I subsystem in the genome of *Rhizobium leguminosarum* (GCF_002243365.1) is composed of 2 proteins: 4TM_new (WP_094230678.1)and, Cyclase_SMODS (WP_094230679.1).
+
+{max-width=750px}
+
+CBASS_II subsystem in the genome of *Parvularcula bermudensis* (GCF_000152825.2) is composed of 3 proteins: 4TM_new (WP_013299178.1), Cyclase_II (WP_148235131.1)and, AG_E2_Prok-E2_B (WP_013299180.1).
+
+{max-width=750px}
+
+CBASS_III subsystem in the genome of *Methylocella tundrae* (GCF_900749825.1) is composed of 5 proteins: Endonuc_small (WP_134490779.1), Cyclase_SMODS (WP_134490781.1), bacHORMA_2 (WP_134490783.1), HORMA (WP_134490785.1)and, TRIP13 (WP_134490787.1).
+
+{max-width=750px}
+
+CBASS_IV subsystem in the genome of *Bacillus sp.* (GCF_022809835.1) is composed of 4 proteins: 2TM_type_IV (WP_243501124.1), QueC (WP_206906219.1), TGT (WP_243501126.1)and, Cyclase_SMODS (WP_243501127.1).
+
+## Distribution of the system among prokaryotes
+
+The CBASS system is present in a total of 1062 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2938 genomes (12.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the CBASS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+CBASS systems were experimentally validated using:
+
+A system from *Vibrio cholerae* in *Escherichia coli* has an anti-phage effect against P1, T2 (Cohen et al., 2019)
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1, T2, T4, T5, T6, LambdaVir (Cohen et al., 2019)
+
+A system from *Enterobacter cloacae* in *Escherichia coli* has an anti-phage effect against T2, T7 (Lowey et al., 2020)
+
+A system from *Pseudomonas aeruginosa* in *Pseudomonas aeruginosa* has an anti-phage effect against PaMx41, PaMx33, PaMx35, PaMx43 (Huiting et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.molcel.2019.12.009
+ - 10.1016/j.molcel.2021.10.020
+ - 10.1038/s41564-020-0777-y
+ - 10.1038/s41586-019-1605-5
+ - 10.1038/s41586-020-2719-5
+
+---
+::
diff --git a/content/2.defense-systems/dartg.md b/content/2.defense-systems/dartg.md
new file mode 100644
index 0000000000000000000000000000000000000000..2a21019e0e6e0245336f1cdf1be88a5166bc1e8b
--- /dev/null
+++ b/content/2.defense-systems/dartg.md
@@ -0,0 +1,39 @@
+---
+title: DarTG
+---
+
+## Example of genomic structure
+
+The DarTG system is composed of 2 proteins: DarT and, DarG.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+DarTG system in the genome of *Mycobacterium tuberculosis* (GCF_904810345.1) is composed of 2 proteins: DarT (WP_003400548.1)and, DarG (WP_003400551.1).
+
+## Distribution of the system among prokaryotes
+
+The DarTG system is present in a total of 356 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 955 genomes (4.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the DarTG system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+DarTG systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against RB69, T5, SECphi18, Lust (Leroux et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01153-5
+
+---
+::
diff --git a/content/2.defense-systems/dazbog.md b/content/2.defense-systems/dazbog.md
new file mode 100644
index 0000000000000000000000000000000000000000..d59190384fd23208027ce329f761b9f265da9f05
--- /dev/null
+++ b/content/2.defense-systems/dazbog.md
@@ -0,0 +1,41 @@
+---
+title: Dazbog
+---
+
+## Example of genomic structure
+
+The Dazbog system is composed of 2 proteins: DzbB and, DzbA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Dazbog system in the genome of *Bacillus cereus* (GCF_001518875.1) is composed of 2 proteins: DzbA (WP_082188833.1)and, DzbB (WP_059303380.1).
+
+## Distribution of the system among prokaryotes
+
+The Dazbog system is present in a total of 66 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 73 genomes (0.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Dazbog system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Dazbog systems were experimentally validated using:
+
+A system from *Bacillus cereus* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, T5, T7 (Millman et al., 2022)
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against Fado, SPR (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/dctpdeaminase.md b/content/2.defense-systems/dctpdeaminase.md
new file mode 100644
index 0000000000000000000000000000000000000000..f9bdc9bd874b59c0f7e316eb3060e3e7fc4f7652
--- /dev/null
+++ b/content/2.defense-systems/dctpdeaminase.md
@@ -0,0 +1,58 @@
+---
+title: dCTPdeaminase
+---
+
+## Description
+dCTPdeaminase is a family of systems. dCTPdeaminase from Escherichia coli has been shown to provide resistance against various lytic phages when express heterologously in another Escherichia coli.
+This system is mostly found in Proteobacteria but a few examples also exist in Acidobacteria, Actinobacteria, Bacteroidetes, Cyanobacteria, Firmicutes, Planctomyces, and Verrucomicrobia.
+Those systems can be found in plasmids (around 8%).
+
+## Mechanism
+When activated by a phage infection, dCTPdeaminase, will convert deoxycytidine (dCTP/dCDP/dCMP) into deoxyuridine.
+This action will deplete the pool of CTP nucleotide necessary for the phage replication and will stop the infection.
+The trigger for dCTPdeaminase may be linked to the shutoff of RNAP (σS-dependent host RNA polymerase) that occur during phage infections.
+
+## Example of genomic structure
+
+The dCTPdeaminase system is composed of one protein: dCTPdeaminase.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+dCTPdeaminase system in the genome of *Vibrio parahaemolyticus* (GCF_009883855.1) is composed of 1 protein: dCTPdeaminase (WP_029845369.1).
+
+## Distribution of the system among prokaryotes
+
+The dCTPdeaminase system is present in a total of 269 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 501 genomes (2.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+dCTPdeaminase systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5, SECphi4, SECphi6, SECphi18, T2, T4, T6, T7 (Tal et al., 2022)
+
+Subsystem AvcID with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T3, SECphi17, SECphi18, SECphi27 (Hsueh et al., 2022)
+
+Subsystem AvcID with a system from *Proteus mirabilis* in *Escherichia coli* has an anti-phage effect against T4 (Hsueh et al., 2022)
+
+Subsystem AvcID with a system from *Vibrio parahaemolyticus* in *Escherichia coli* has an anti-phage effect against T3, T5, T6, SECphi18 (Hsueh et al., 2022)
+
+Subsystem AvcID with a system from *Vibrio cholerae* in *Escherichia coli* has an anti-phage effect against T2, T3 (Hsueh et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01162-4
+ - 10.1038/s41564-022-01162-4
+
+---
+::
diff --git a/content/2.defense-systems/dgtpase.md b/content/2.defense-systems/dgtpase.md
new file mode 100644
index 0000000000000000000000000000000000000000..c09e3ba0fb0501bd19fc52afe92604bf05b1a176
--- /dev/null
+++ b/content/2.defense-systems/dgtpase.md
@@ -0,0 +1,47 @@
+---
+title: dGTPase
+---
+title: dGTPase
+---
+
+## Example of genomic structure
+
+The dGTPase system is composed of one protein: Sp_dGTPase.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+dGTPase system in the genome of *Acinetobacter pittii* (GCF_002012285.1) is composed of 1 protein: Sp_dGTPase (WP_213033921.1).
+
+## Distribution of the system among prokaryotes
+
+The dGTPase system is present in a total of 353 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1532 genomes (6.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+dGTPase systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5, SECphi4, SECphi6, SECphi18, SECphi27, T7 (Tal et al., 2022)
+
+A system from *Mesorhizobium ssp.* in *Escherichia coli* has an anti-phage effect against SECphi4, SECphi6, SECphi18, SECphi27, T7 (Tal et al., 2022)
+
+A system from *Pseudoalteromonas luteoviolacea* in *Escherichia coli* has an anti-phage effect against T5, SECphi4, SECphi6, SECphi18, SECphi27, T2 (Tal et al., 2022)
+
+A system from *Shewanella putrefaciens* in *Escherichia coli* has an anti-phage effect against T5, SECphi4, SECphi6, SECphi18, SECphi27, T2, T6, T7, SECphi17 (Tal et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01162-4
+
+---
+::
diff --git a/content/2.defense-systems/disarm.md b/content/2.defense-systems/disarm.md
new file mode 100644
index 0000000000000000000000000000000000000000..153d6dde2f436666d1352e46648b3f1ff1577d61
--- /dev/null
+++ b/content/2.defense-systems/disarm.md
@@ -0,0 +1,64 @@
+---
+title: DISARM
+---
+
+## Description
+
+DISARM (Defense Island System Associated with Restriction-Modification) is a defense system widespread in prokaryotes, encoded by a 5-gene cassette. DISARM provides broad protection against double-stranded DNA phages, including siphophages, myophages, and podophages (1,3).
+
+Â It was reported to restrict incoming phage DNA and methylate the bacterial host DNA, which could be responsible for self from non-self discrimination (1). This suggests a [Restriction-Modification](/list_defense_systems/RM)-like (RM-like) mechanism, yet some pieces of experimental evidence hint that DISARM actually acts through a novel and uncharacterized molecular mechanism (1,2).
+
+## Molecular mechanism
+
+DISARM allows phage adsorption but prevents phage replication. DISARM is thought to cause intracellular phage DNA decay (1), but the molecular of this potential DNA degradation remains unknown.
+
+The *drmMII* gene of DISARM system from *Bacillus paralicheniformis* was shown to methylate bacterial DNA at CCWGG motifs when expressed in Bacillus subtilis, and in the absence of *drmMII,* this DISARM system appears toxic to the cells (1). These observations are consistent with an RM-like mechanism, where nucleic acid degradation targets specific DNA motifs, that are methylated in the bacterial chromosome to prevent auto-immunity.Â
+
+Yet this system was also shown to protect against phages whose genomes are exempt of CCWGG motifs (1). Moreover, a recent study reports that the absence of methylases (DrmMI or DrmMII) of the DISARM system from a *Serratia sp.* does not result in autoimmunity (3). Both these results suggest additional phage DNA recognition mechanisms.Â
+
+Hints of these additional mechanisms can be found in recent structural studies, which show that DrmA and DrmB form a complex that can bind single-stranded DNA (2). Moreover, the DrmAB complex seems to exhibit strong ATPase activity in presence of unmethylated DNA, and  reduced ATPase activity in the presence of a methylated DNA substrate (2). Finally, binding of unmethylated single-stranded DNA appears to mediate major conformational change of the complex, which was hypothesized to be responsible for downstream DISARM activation (2).
+
+
+## Example of genomic structure
+DISARM is encoded by three core genes: *drmA* (encoding for a protein containing a putative helicase domain)*,* *drmB* (encoding for a protein containing a putative helicase-associated domain), and *drmC* (encoding for a protein containing a phospholipase D/nuclease domain) (1)
+
+These three core genes are accompanied by a methyltransferase, which can be either an adenine methylase (*drmMI*) for class 1 DISARM systems or a cytosine methylase (*drmMII*) for DISARM class 2. Both classes also encode an additional gene (*drmD* for class 1, and *drmE* for class 2).Â
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+DISARM_1 subsystem in the genome of *Pseudomonas aeruginosa* (GCF_009676885.1) is composed of 6 proteins: drmD (WP_023093122.1), drmMI (WP_023115027.1), drmD (WP_023093126.1), drmA (WP_033993408.1), drmB (WP_023093129.1)and, drmC (WP_031637507.1).
+
+{max-width=750px}
+
+DISARM_2 subsystem in the genome of *Bacillus paralicheniformis* (GCF_009497935.1) is composed of 5 proteins: drmMII (WP_020450482.1), drmC (WP_020450481.1), drmB (WP_025810358.1), drmA (WP_020450479.1)and, drmE (WP_020450478.1).
+
+## Distribution of the system among prokaryotes
+
+The DISARM system is present in a total of 214 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 341 genomes (1.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the DISARM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+DISARM systems were experimentally validated using:
+
+A system from *Bacillus paralicheniformis* in *Bacillus subtilis* has an anti-phage effect against SPO1, phi3T, SpBeta, SPR, phi105, rho14, SPP1, phi29 , Nf (Doron et al., 2018; Ofir et al., 2017)
+
+A system from *Serratia sp. SCBI* in *Escherichia coli* has an anti-phage effect against T1, Nami, T7, M13 (Aparicio-Maldonado et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41467-022-30673-1
+ - 10.1038/s41564-017-0051-0
+
+---
+::
diff --git a/content/2.defense-systems/dmdde.md b/content/2.defense-systems/dmdde.md
new file mode 100644
index 0000000000000000000000000000000000000000..32f25ceeeeb31c6655b8d07b6090ec7beacdaa97
--- /dev/null
+++ b/content/2.defense-systems/dmdde.md
@@ -0,0 +1,33 @@
+---
+title: DmdDE
+---
+
+## Example of genomic structure
+
+The DmdDE system is composed of 2 proteins: DdmE and, DdmD.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+DdmDE subsystem in the genome of *Vibrio vulnificus* (GCF_002850455.1) is composed of 2 proteins: DdmE (WP_101957190.1)and, DdmD (WP_101957191.1).
+
+## Distribution of the system among prokaryotes
+
+The DmdDE system is present in a total of 50 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 145 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the DmdDE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41586-022-04546-y
+
+---
+::
diff --git a/content/2.defense-systems/dnd.md b/content/2.defense-systems/dnd.md
new file mode 100644
index 0000000000000000000000000000000000000000..2464291e7fcce75e341e01ca2deee4e3e4f2b701
--- /dev/null
+++ b/content/2.defense-systems/dnd.md
@@ -0,0 +1,44 @@
+---
+title: Dnd
+---
+
+## Example of genomic structure
+
+The Dnd system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Dnd_ABCDE subsystem in the genome of *Vibrio tritonius* (GCF_001547935.1) is composed of 6 proteins: DndA (WP_068714508.1), DndB (WP_068714510.1), DndC (WP_068714512.1), DndD (WP_068714514.1), DndE (WP_068714516.1)and, DndD (WP_068714526.1).
+
+{max-width=750px}
+
+Dnd_ABCDEFGH subsystem in the genome of *Vibrio sp.* (GCF_023716625.1) is composed of 8 proteins: DptF (WP_252041715.1), DptG (WP_252041716.1), DptH (WP_252041717.1), DndE (WP_252041720.1), DndD (WP_252041722.1), DndC (WP_252041723.1), DndB (WP_252041724.1)and, DndA (WP_252041725.1).
+
+## Distribution of the system among prokaryotes
+
+The Dnd system is present in a total of 218 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 388 genomes (1.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Dnd system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Dnd systems were experimentally validated using:
+
+Subsystem DndCDEA-PbeABCD with a system from *Halalkalicoccus jeotgali* in *Natrinema sp. CJ7-F* has an anti-phage effect against SNJ1 (Xiong et al., 2019)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/nchembio.2007.39
+ - 10.1038/s41467-019-09390-9
+
+---
+::
diff --git a/content/2.defense-systems/dodola.md b/content/2.defense-systems/dodola.md
new file mode 100644
index 0000000000000000000000000000000000000000..d229b67c553f129c1d957069ff9cc2bb0bb5f538
--- /dev/null
+++ b/content/2.defense-systems/dodola.md
@@ -0,0 +1,39 @@
+---
+title: Dodola
+---
+
+## Example of genomic structure
+
+The Dodola system is composed of 2 proteins: DolA and, DolB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Dodola system in the genome of *Streptococcus thermophilus* (GCF_015190465.1) is composed of 2 proteins: DolA (WP_084825722.1)and, DolB (WP_084825723.1).
+
+## Distribution of the system among prokaryotes
+
+The Dodola system is present in a total of 91 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 313 genomes (1.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Dodola system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Dodola systems were experimentally validated using:
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against SPP1 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/dpd.md b/content/2.defense-systems/dpd.md
new file mode 100644
index 0000000000000000000000000000000000000000..3bb832f2bcadd353a18bc6a6653ef1a98690d8dd
--- /dev/null
+++ b/content/2.defense-systems/dpd.md
@@ -0,0 +1,33 @@
+---
+title: Dpd
+---
+
+## Example of genomic structure
+
+The Dpd system is composed of 15 proteins: FolE, QueD, DpdC, DpdA, DpdB, QueC, DpdD, DpdK, DpdJ, DpdI, DpdH, DpdG, DpdF, DpdE and, QueE.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Dpd system in the genome of *Thalassotalea crassostreae* (GCF_001831495.1) is composed of 15 proteins: QueE (WP_068546614.1), DpdE (WP_068546526.1), DpdF (WP_068546528.1), DpdG (WP_068546530.1), DpdH (WP_070795901.1), DpdI (WP_068546533.1), DpdJ (WP_068546534.1), DpdK (WP_082897170.1), DpdD (WP_068546535.1), QueC (WP_068546536.1), DpdB (WP_068546537.1), DpdA (WP_068546538.1), DpdC (WP_157726628.1), QueD (WP_068546540.1)and, FolE (WP_068546542.1).
+
+## Distribution of the system among prokaryotes
+
+The Dpd system is present in a total of 100 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 226 genomes (1.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Dpd system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1073/pnas.1518570113
+
+---
+::
diff --git a/content/2.defense-systems/drt.md b/content/2.defense-systems/drt.md
new file mode 100644
index 0000000000000000000000000000000000000000..42c02922819b45f91c188872d6e1aad29a180d2c
--- /dev/null
+++ b/content/2.defense-systems/drt.md
@@ -0,0 +1,82 @@
+---
+title: DRT
+---
+
+## Example of genomic structure
+
+The DRT system have been describe in a total of 9 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+DRT6 subsystem in the genome of *Methylobacterium sp.* (GCF_003254375.1) is composed of 1 protein: DRT6 (WP_111474389.1).
+
+{max-width=750px}
+
+DRT8 subsystem in the genome of *Undibacterium sp.* (GCF_009937955.1) is composed of 2 proteins: DRT8b (WP_162060770.1)and, DRT8 (WP_162060771.1).
+
+{max-width=750px}
+
+DRT9 subsystem in the genome of *Pseudomonas aeruginosa* (GCF_016864415.1) is composed of 1 protein: DRT9 (WP_071567741.1).
+
+{max-width=750px}
+
+DRT_1 subsystem in the genome of *Vibrio parahaemolyticus* (GCF_000430405.1) is composed of 2 proteins: drt1a (WP_020841728.1)and, drt1b (WP_020841729.1).
+
+{max-width=750px}
+
+DRT_2 subsystem in the genome of *Klebsiella variicola* (GCF_018324045.1) is composed of 1 protein: drt2 (WP_020244644.1).
+
+{max-width=750px}
+
+DRT_3 subsystem in the genome of *Vibrio mimicus* (GCF_019048845.1) is composed of 2 proteins: drt3a (WP_217011272.1)and, drt3b (WP_217011273.1).
+
+{max-width=750px}
+
+DRT_4 subsystem in the genome of *Escherichia albertii* (GCF_003316815.1) is composed of 1 protein: drt4 (WP_103054060.1).
+
+{max-width=750px}
+
+DRT_5 subsystem in the genome of *Escherichia coli* (GCF_016904115.1) is composed of 1 protein: drt5 (WP_001524904.1).
+
+## Distribution of the system among prokaryotes
+
+The DRT system is present in a total of 573 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1365 genomes (6.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the DRT system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+DRT systems were experimentally validated using:
+
+Subsystem RT-nitrilase (UG1) (Type 1) with a system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage effect against T2, T4, T5 (Gao et al., 2020)
+
+Subsystem RT (UG2) (Type 2) with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T5, T2 (Gao et al., 2020; Mestre et al., 2022)
+
+Subsystem RT (UG3) + RT (UG8) (Type 3) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T5, Lambda (Gao et al., 2020)
+
+Subsystem RT (UG15) (Type 4) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5, T3, T7, Phi-V1, ZL19 (Gao et al., 2020; Mestre et al., 2022)
+
+Subsystem RT (UG16) (Type 5) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2 (Gao et al., 2020)
+
+Subsystem RT (UG10) (Type 7) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T5, ZL-19 (Mestre et al., 2022)
+
+Subsystem RT(UG7) (Type 8) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T5 (Mestre et al., 2022)
+
+Subsystem RT (UG28) (Type 9) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T5, ZL-19 (Mestre et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1093/nar/gkac467
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/druantia.md b/content/2.defense-systems/druantia.md
new file mode 100644
index 0000000000000000000000000000000000000000..384695803070101dd7ee0ba3c288e50219b73c17
--- /dev/null
+++ b/content/2.defense-systems/druantia.md
@@ -0,0 +1,47 @@
+---
+title: Druantia
+---
+
+## Example of genomic structure
+
+The Druantia system have been describe in a total of 3 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Druantia_I subsystem in the genome of *Escherichia coli* (GCF_002220215.1) is composed of 5 proteins: DruA (WP_000549798.1), DruB (WP_001315973.1), DruC (WP_021520530.1), DruD (WP_000455180.1)and, DruE_1 (WP_089180326.1).
+
+{max-width=750px}
+
+Druantia_II subsystem in the genome of *Collimonas pratensis* (GCF_001584185.1) is composed of 4 proteins: DruM (WP_082793204.1), DruE_2 (WP_061945149.1), DruG (WP_061945151.1)and, DruF (WP_150119800.1).
+
+{max-width=750px}
+
+Druantia_III subsystem in the genome of *Acinetobacter baumannii* (GCF_012935125.1) is composed of 2 proteins: DruH (WP_005120035.1)and, DruE_3 (WP_002036795.1).
+
+## Distribution of the system among prokaryotes
+
+The Druantia system is present in a total of 284 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 827 genomes (3.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Druantia system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Druantia systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T5, P1, Lambda, T3, T7, PhiV-1, Lambdavir, SECphi18, SECphi27 (Gao et al., 2020; Doron et al., 2018)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aar4120
+
+---
+::
diff --git a/content/2.defense-systems/dsr.md b/content/2.defense-systems/dsr.md
new file mode 100644
index 0000000000000000000000000000000000000000..c22a192b874220ba1ab12f3235000e6a953e3b7e
--- /dev/null
+++ b/content/2.defense-systems/dsr.md
@@ -0,0 +1,50 @@
+---
+title: Dsr
+---
+
+## Example of genomic structure
+
+The Dsr system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Dsr_I subsystem in the genome of *Escherichia coli* (GCF_016904235.1) is composed of 1 protein: Dsr1 (WP_204608492.1).
+
+{max-width=750px}
+
+Dsr_II subsystem in the genome of *Escherichia coli* (GCF_009950125.1) is composed of 1 protein: Dsr2 (WP_178103017.1).
+
+## Distribution of the system among prokaryotes
+
+The Dsr system is present in a total of 246 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 641 genomes (2.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Dsr system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Dsr systems were experimentally validated using:
+
+Subsystem DSR1 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T3, T7, PhiV-1 (Gao et al., 2020)
+
+Subsystem DSR2 with a system from *Cronobacter sakazakii* in *Escherichia coli* has an anti-phage effect against Lambda (Gao et al., 2020)
+
+Subsystem DSR2 with a system from *Bacillus subtilis* in *Bacillus subtilis * has an anti-phage effect against SPR (Garb et al., 2022)
+
+Subsystem DSR1 with a system from *Bacillus subtilis* in *Bacillus subtilis * has an anti-phage effect against phi29 (Garb et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01207-8
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/eleos.md b/content/2.defense-systems/eleos.md
new file mode 100644
index 0000000000000000000000000000000000000000..ab4a090cfb22c06e130c1fec320914770db0f6a0
--- /dev/null
+++ b/content/2.defense-systems/eleos.md
@@ -0,0 +1,41 @@
+---
+title: Eleos
+---
+
+The Eleos system was previously described as the Dynamins-like system in (Millman et al, 2022).
+
+## Example of genomic structure
+The Eleos system is composed of 2 proteins: LeoA and, LeoBC. Sometimes, the systems is in three genes: LeoA, LeoB and LeoC.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Dynamins system in the genome of *Pseudomonas aeruginosa* (GCF_002223805.1) is composed of 2 proteins: LeoBC (WP_024947442.1)and, LeoA (WP_024947443.1).
+
+## Distribution of the system among prokaryotes
+
+The Eleos system is present in a total of 807 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2652 genomes (11.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Eleos system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Eleos systems were experimentally validated using:
+
+A system from *Bacillus vietnamensis* in *Bacillus subtilis* has an anti-phage effect against AR9 (Jumbo), PBS1(Jumbo) (Millman et al., 2022)
+
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/gabija.md b/content/2.defense-systems/gabija.md
new file mode 100644
index 0000000000000000000000000000000000000000..a17b54fb29e515bd4c8a50997726aa87b4d33561
--- /dev/null
+++ b/content/2.defense-systems/gabija.md
@@ -0,0 +1,54 @@
+---
+title: Gabija
+---
+
+## Description
+
+According to recent studies, GajA is a sequence-specific DNA nicking endonuclease, whose activity is inhibited by nucleotide concentration. Accordingly, GajA would be fully inhibited at cellular nucleotides concentrations. It was hypothesized that upon nucleotide depletion during phage infection, GajA would become activated (2).Â
+
+Another study suggests that the *gajB* gene could encode for an NTPase, which would form a complex with GajA to achieve anti-phage defense (3).
+
+## Molecular mechanism
+
+The precise mechanism of the Gabija system remains to be fully described, yet studies suggest that it could act either as a nucleic acid degrading system or as an abortive infection system.
+
+## Example of genomic structure
+
+The Gabija system is composed of 2 proteins: GajA and, GajB_2.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gabija system in the genome of *Vibrio parahaemolyticus* (GCF_009883895.1) is composed of 2 proteins: GajA (WP_085576823.1)and, GajB_1 (WP_031856308.1).
+
+## Distribution of the system among prokaryotes
+
+The Gabija system is present in a total of 1200 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 3762 genomes (16.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gabija system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gabija systems were experimentally validated using:
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against SBSphiC, SpBeta, phi105, rho14, phi29 (Doron et al., 2018)
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against SpBeta, phi105 (Doron et al., 2018)
+
+A system from *Bacillus cereus* in *Escherichia coli* has an anti-phage effect against T7 (Cheng et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1093/nar/gkab277
+ - 10.1126/science.aar4120
+
+---
+::
diff --git a/content/2.defense-systems/gao_ape.md b/content/2.defense-systems/gao_ape.md
new file mode 100644
index 0000000000000000000000000000000000000000..898c287ef9cbb28e1899344791605d1c4cbdf443
--- /dev/null
+++ b/content/2.defense-systems/gao_ape.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Ape
+---
+
+## Example of genomic structure
+
+The Gao_Ape system is composed of one protein: ApeA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Ape system in the genome of *Klebsiella sp.* (GCF_018388785.1) is composed of 1 protein: ApeA (WP_213292831.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Ape system is present in a total of 76 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 199 genomes (0.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Ape system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Ape systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T5, T3, T7, PhiV-1 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_her.md b/content/2.defense-systems/gao_her.md
new file mode 100644
index 0000000000000000000000000000000000000000..d85d02c6e45d47051c6e3982940592a6d7865e61
--- /dev/null
+++ b/content/2.defense-systems/gao_her.md
@@ -0,0 +1,45 @@
+---
+title: Gao_Her
+---
+
+## Example of genomic structure
+
+The Gao_Her system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Her_DUF subsystem in the genome of *Enterobacter roggenkampii* (GCF_014524505.1) is composed of 2 proteins: DUF4297 (WP_188074283.1)and, HerA_DUF (WP_063614829.1).
+
+{max-width=750px}
+
+Gao_Her_SIR subsystem in the genome of *Escherichia coli* (GCF_012221565.1) is composed of 2 proteins: SIR2 (WP_167839366.1)and, HerA_SIR2 (WP_021577682.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Her system is present in a total of 127 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 233 genomes (1.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Her system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Her systems were experimentally validated using:
+
+Subsystem SIR2 + HerA with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against Lambda, T3, T7, PhiV-1 (Gao et al., 2020)
+
+Subsystem DUF4297 + HerA with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, P1, Lambda, T3, T7 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_hhe.md b/content/2.defense-systems/gao_hhe.md
new file mode 100644
index 0000000000000000000000000000000000000000..819461fe7716161cd228a259077d81da99c80229
--- /dev/null
+++ b/content/2.defense-systems/gao_hhe.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Hhe
+---
+
+## Example of genomic structure
+
+The Gao_Hhe system is composed of one protein: HheA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Hhe system in the genome of *Klebsiella pneumoniae* (GCF_011742415.2) is composed of 1 protein: HheA (WP_021314612.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Hhe system is present in a total of 49 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 279 genomes (1.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Hhe system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Hhe systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against Lambda, T3, T7, PhiV-1 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_iet.md b/content/2.defense-systems/gao_iet.md
new file mode 100644
index 0000000000000000000000000000000000000000..6c1b81a95448d664ee9a38274336b38ff4c7b3e9
--- /dev/null
+++ b/content/2.defense-systems/gao_iet.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Iet
+---
+
+## Example of genomic structure
+
+The Gao_Iet system is composed of 2 proteins: IetS and, IetA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Iet system in the genome of *Escherichia coli* (GCF_014169855.1) is composed of 2 proteins: IetS (WP_001551050.1)and, IetA (WP_000385105.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Iet system is present in a total of 189 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 436 genomes (1.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Iet system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Iet systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against Lambda, T3, T7, PhiV-1 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_mza.md b/content/2.defense-systems/gao_mza.md
new file mode 100644
index 0000000000000000000000000000000000000000..c616426d9c930dc718a81373a2afa9310188cce8
--- /dev/null
+++ b/content/2.defense-systems/gao_mza.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Mza
+---
+
+## Example of genomic structure
+
+The Gao_Mza system is composed of 5 proteins: MzaB, MzaC, MzaA, MzaD and, MzaE.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Mza system in the genome of *Enterobacter roggenkampii* (GCF_023023065.1) is composed of 5 proteins: MzaE (WP_045418899.1), MzaD (WP_045418897.1), MzaC (WP_025912266.1), MzaB (WP_045418895.1)and, MzaA (WP_045418893.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Mza system is present in a total of 57 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 99 genomes (0.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Mza system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Mza systems were experimentally validated using:
+
+A system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T2, T4, T5, Lambda, M13 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_ppl.md b/content/2.defense-systems/gao_ppl.md
new file mode 100644
index 0000000000000000000000000000000000000000..e79e284ea6601fb1b7966339343bdd2e06b7818c
--- /dev/null
+++ b/content/2.defense-systems/gao_ppl.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Ppl
+---
+
+## Example of genomic structure
+
+The Gao_Ppl system is composed of one protein: PplA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Ppl system in the genome of *Klebsiella pneumoniae* (GCF_002787755.1) is composed of 1 protein: PplA (WP_015059139.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Ppl system is present in a total of 106 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 364 genomes (1.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Ppl system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Ppl systems were experimentally validated using:
+
+A system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against Lambda, T3, T7, PhiV-1 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_qat.md b/content/2.defense-systems/gao_qat.md
new file mode 100644
index 0000000000000000000000000000000000000000..91b89e32d5b0521d8d3cf38debe2edf222d4ec8b
--- /dev/null
+++ b/content/2.defense-systems/gao_qat.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Qat
+---
+
+## Example of genomic structure
+
+The Gao_Qat system is composed of 4 proteins: QatA, QatB, QatC and, QatD.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Qat system in the genome of *Raoultella ornithinolytica* (GCF_002214825.1) is composed of 4 proteins: QatA (WP_088883811.1), QatB (WP_127146083.1), QatC (WP_088883813.1)and, QatD (WP_088883814.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Qat system is present in a total of 246 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 645 genomes (2.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Qat system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Qat systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1, Lambda (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_rl.md b/content/2.defense-systems/gao_rl.md
new file mode 100644
index 0000000000000000000000000000000000000000..6de29d96a321f8d1688e88abbbe810c19f39b96f
--- /dev/null
+++ b/content/2.defense-systems/gao_rl.md
@@ -0,0 +1,39 @@
+---
+title: Gao_RL
+---
+
+## Example of genomic structure
+
+The Gao_RL system is composed of 4 proteins: RL_D, RL_C, RL_B and, RL_A.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_RL system in the genome of *Morganella morganii* (GCF_020790175.1) is composed of 4 proteins: RL_D (WP_064483389.1), RL_C (WP_064483388.1), RL_B (WP_064483387.1)and, RL_A (WP_064483386.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_RL system is present in a total of 77 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 133 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_RL system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_RL systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1, Lambda, M13 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_tery.md b/content/2.defense-systems/gao_tery.md
new file mode 100644
index 0000000000000000000000000000000000000000..bd5bc3c4415b2871193322cbcdf5b67ca6e09010
--- /dev/null
+++ b/content/2.defense-systems/gao_tery.md
@@ -0,0 +1,39 @@
+---
+title: Gao_TerY
+---
+
+## Example of genomic structure
+
+The Gao_TerY system is composed of 3 proteins: TerYC, TerYB and, TerYA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_TerY system in the genome of *Burkholderia contaminans* (GCF_018223785.1) is composed of 3 proteins: TerYA (WP_039364687.1), TerYB (WP_039364686.1)and, TerYC (WP_039364684.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_TerY system is present in a total of 69 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 126 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_TerY system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_TerY systems were experimentally validated using:
+
+A system from *Citrobacter gillenii* in *Escherichia coli* has an anti-phage effect against T3, T7, PhiV-1 (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_tmn.md b/content/2.defense-systems/gao_tmn.md
new file mode 100644
index 0000000000000000000000000000000000000000..37f11421937dd2f80e269d7ae7670d967cb4c00d
--- /dev/null
+++ b/content/2.defense-systems/gao_tmn.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Tmn
+---
+
+## Example of genomic structure
+
+The Gao_Tmn system is composed of one protein: TmnA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Tmn system in the genome of *Salmonella enterica* (GCF_006384195.1) is composed of 1 protein: TmnA (WP_130525902.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Tmn system is present in a total of 82 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 414 genomes (1.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Tmn system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Tmn systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, P1, PhiV-1, PhiX (Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gao_upx.md b/content/2.defense-systems/gao_upx.md
new file mode 100644
index 0000000000000000000000000000000000000000..2bf2a707c8392051604734fc405432bb7a2323e6
--- /dev/null
+++ b/content/2.defense-systems/gao_upx.md
@@ -0,0 +1,39 @@
+---
+title: Gao_Upx
+---
+
+## Example of genomic structure
+
+The Gao_Upx system is composed of one protein: UpxA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Gao_Upx system in the genome of *Salmonella sp.* (GCF_020268625.1) is composed of 1 protein: UpxA (WP_060647174.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao_Upx system is present in a total of 31 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 39 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Gao_Upx system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Gao_Upx systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1, PhiV-1(Gao et al., 2020)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
diff --git a/content/2.defense-systems/gasdermin.md b/content/2.defense-systems/gasdermin.md
new file mode 100644
index 0000000000000000000000000000000000000000..af871940614406f98deae7a77109ab1fe378b137
--- /dev/null
+++ b/content/2.defense-systems/gasdermin.md
@@ -0,0 +1,39 @@
+---
+title: GasderMIN
+---
+
+## Example of genomic structure
+
+The GasderMIN system is composed of one protein: bGSDM.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+GasderMIN system in the genome of *Rhodoplanes sp.* (GCF_001579845.1) is composed of 1 protein: bGSDM (WP_068019379.1).
+
+## Distribution of the system among prokaryotes
+
+The GasderMIN system is present in a total of 25 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 29 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the GasderMIN system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+GasderMIN systems were experimentally validated using:
+
+A system from *Lysobacter enzymogenes* in *Escherichia coli* has an anti-phage effect against T5, T4, T6 (Johnson et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.abj8432
+
+---
+::
diff --git a/content/2.defense-systems/gp29_gp30.md b/content/2.defense-systems/gp29_gp30.md
new file mode 100644
index 0000000000000000000000000000000000000000..76d0b3f9ce38fe479bcf87db922d3b0f58ee17b4
--- /dev/null
+++ b/content/2.defense-systems/gp29_gp30.md
@@ -0,0 +1,33 @@
+---
+title: gp29_gp30
+---
+
+## Example of genomic structure
+
+The gp29_gp30 system is composed of 2 proteins: gp30 and, gp29.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+gp29_gp30 system in the genome of *Mycobacterium tuberculosis* (GCF_002448055.1) is composed of 2 proteins: gp29 (WP_003407164.1)and, gp30 (WP_003407167.1).
+
+## Distribution of the system among prokaryotes
+
+The gp29_gp30 system is present in a total of 35 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 314 genomes (1.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/nmicrobiol.2016.251
+
+---
+::
diff --git a/content/2.defense-systems/hachiman.md b/content/2.defense-systems/hachiman.md
new file mode 100644
index 0000000000000000000000000000000000000000..82f056a2c32919af467c065eb058f703b2dec88b
--- /dev/null
+++ b/content/2.defense-systems/hachiman.md
@@ -0,0 +1,54 @@
+---
+title: Hachiman
+---
+
+## Description
+
+Hachiman Type 1 systems were the first discovered and can be found in 3.4% of microbial genomes (1). Hachiman Type 1 systems are encoded by two genes, *hamA* (annotated as a Domain of Unknown Function, DUF) and *hamB* (annotated as a helicase) (1).Â
+
+More recently, Hachiman Type 2 systems were discovered and appeared to include a third gene, encoded for a DUF protein (HamC) (2).
+
+## Example of genomic structure
+
+The Hachiman type I system is composed of 2 proteins: HamB and, HamA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Hachiman system in the genome of *Mesorhizobium terrae* (GCF_008727715.1) is composed of 2 proteins: HamA_1 (WP_245317480.1)and, HamB (WP_065997554.1).
+
+## Distribution of the system among prokaryotes
+
+The Hachiman system is present in a total of 518 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1361 genomes (6.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Hachiman system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Hachiman systems were experimentally validated using:
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against SBSphiJ, phi3T, SPbeta, SPR, phi105, rho14, phi29 (Doron et al., 2018)
+
+Subsystem Hachiman Type II with a system from *Sphingopyxis witflariensis* in *Escherichia coli* has an anti-phage effect against T3, PVP-SE1 (Payne et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aar4120
+
+---
+::
+
+
+## References
+
+1. Doron S, Melamed S, Ofir G, et al. Systematic discovery of antiphage defense systems in the microbial pangenome. *Science*. 2018;359(6379):eaar4120. doi:10.1126/science.aar4120
+
+2. Payne LJ, Todeschini TC, Wu Y, Perry BJ, Ronson CW, Fineran PC, Nobrega FL, Jackson SA. Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types. Nucleic Acids Res. 2021 Nov 8;49(19):10868-10878. doi: 10.1093/nar/gkab883. PMID: 34606606; PMCID: PMC8565338.
diff --git a/content/2.defense-systems/isg15-like.md b/content/2.defense-systems/isg15-like.md
new file mode 100644
index 0000000000000000000000000000000000000000..2339fc1aeb607d7209d16a8bb5e3ecb2cefa51c6
--- /dev/null
+++ b/content/2.defense-systems/isg15-like.md
@@ -0,0 +1,47 @@
+---
+title: ISG15-like
+---
+
+## Example of genomic structure
+
+The ISG15-like system is composed of 4 proteins: BilD, BilC, BilB and, BilA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+ISG15-like system in the genome of *Rhizobium phaseoli* (GCF_001664285.1) is composed of 4 proteins: BilA (WP_064823699.1), BilB (WP_150124924.1), BilC (WP_150124925.1)and, BilD (WP_190304495.1).
+
+## Distribution of the system among prokaryotes
+
+The ISG15-like system is present in a total of 28 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 43 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the ISG15-like system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+ISG15-like systems were experimentally validated using:
+
+A system from *Collimonas sp. OK412* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, T5, SECphi4, SECphi6, SECphi18, SECphi27, T7, SECphi17 (Millman et al., 2022)
+
+A system from *Caulobacter sp. Root343* in *Escherichia coli* has an anti-phage effect against T4, T6, T5, SECphi4, SECphi6, SECphi18, SECphi27, T7, SECphi17 (Millman et al., 2022)
+
+A system from *Cupriavidus sp. SHE* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, T5, SECphi4, SECphi6, SECphi18, SECphi27 (Millman et al., 2022)
+
+A system from *Paraburkholderia caffeinilytica* in *Escherichia coli* has an anti-phage effect against T6, SECphi27 (Millman et al., 2022)
+
+A system from *Thiomonas sp. FB-6* in *Escherichia coli* has an anti-phage effect against SECphi27 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/kiwa.md b/content/2.defense-systems/kiwa.md
new file mode 100644
index 0000000000000000000000000000000000000000..666f6d7f65be129180470c1fe27b47e5ea60831a
--- /dev/null
+++ b/content/2.defense-systems/kiwa.md
@@ -0,0 +1,39 @@
+---
+title: Kiwa
+---
+
+## Example of genomic structure
+
+The Kiwa system is composed of 2 proteins: KwaA and, KwaB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Kiwa system in the genome of *Aggregatibacter actinomycetemcomitans* (GCF_001690155.1) is composed of 2 proteins: KwaB (WP_005553122.1)and, KwaA (WP_005540311.1).
+
+## Distribution of the system among prokaryotes
+
+The Kiwa system is present in a total of 355 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1104 genomes (4.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Kiwa system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Kiwa systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi18 (Doron et al., 2018)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aar4120
+
+---
+::
diff --git a/content/2.defense-systems/lamassu-fam.md b/content/2.defense-systems/lamassu-fam.md
new file mode 100644
index 0000000000000000000000000000000000000000..0300d0923ac357e7f4000c1c642cbcd8623ba8ec
--- /dev/null
+++ b/content/2.defense-systems/lamassu-fam.md
@@ -0,0 +1,119 @@
+---
+title: Lamassu-Fam
+---
+
+## Description
+
+The original types of Lamassu systems are Lamassu Type 1 and 2. They both necessarily comprise two genes *lmuA* and *lmuB*, to which a third gene (*lmuC*) is added in the case of Lamassu Type 2. Â
+
+More recently, Lamassu has been suggested to be a large family of defense systems, that can be classified into multiple subtypes.Â
+
+These systems all encode the *lmuB* gene, and in most cases also comprise *lmuC.* In addition to these two core genes, Lamassu systems of various subtypes encode a third protein, hypothesized to be the Abi effector protein (3). This effector  can not only be LmuA (Lamassu Type1 and 2) but also proteins encoding endonuclease domains, SIR2-domains, or even hydrolase domains (3). Systems of the extended Lamassu-family can be found in 10% of prokaryotic genomes (3).
+
+## Molecular mechanism
+
+Lamassu systems function through abortive infection (Abi), but their molecular mechanism remains to be described.
+
+## Example of genomic structure
+
+The majority of the Lamassu-Fam systems are composed of 3 proteins: LmuA, LmuB and, an accessory LmuC proteins.
+
+Here is an example of a Lamassu-Fam_Cap4_nuclease found in the RefSeq database:
+
+{max-width=750px}
+
+Lamassu-Fam_Cap4_nuclease subsystem in the genome of *Pseudomonas sp.* (GCF_016925675.1) is composed of 3 proteins: LmuB_SMC_Hydrolase_protease (WP_205519025.1), LmuC_acc_Cap4_nuclease (WP_205478326.1)and, LmuA_effector_Cap4_nuclease_II (WP_205478325.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Mrr subsystem in the genome of *Escherichia coli* (GCF_011404895.1) is composed of 2 proteins: LmuA_effector_Mrr (WP_044864610.1)and, LmuB_SMC_Cap4_nuclease_II (WP_226199836.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Hydrolase subsystem in the genome of *Caldisphaera lagunensis* (GCF_000317795.1) is composed of 2 proteins: LmuA_effector_Hydrolase (WP_015232255.1)and, LmuB_SMC_Hydrolase_protease (WP_015232260.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Lipase subsystem in the genome of *Bradyrhizobium elkanii* (GCF_012871055.1) is composed of 2 proteins: LmuA_effector_Lipase (WP_172647146.1)and, LmuB_SMC_Lipase (WP_172647148.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Hydrolase_protease subsystem in the genome of *Klebsiella pneumoniae* (GCF_022453565.1) is composed of 3 proteins: LmuB_SMC_Cap4_nuclease_II (WP_023301569.1), LmuA_effector_Protease (WP_023301563.1)and, LmuA_effector_Hydrolase (WP_023301562.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Hypothetical subsystem in the genome of *Streptococcus constellatus* (GCF_016127875.1) is composed of 2 proteins: LmuB_SMC_Cap4_nuclease_II (WP_198458038.1)and, LmuA_effector_hypothetical (WP_198458040.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Protease subsystem in the genome of *Azospirillum brasilense* (GCF_022023855.1) is composed of 2 proteins: LmuA_effector_Protease (WP_237905456.1)and, LmuB_SMC_Cap4_nuclease_II (WP_237905457.1).
+
+{max-width=750px}
+
+Lamassu-Fam_PDDEXK subsystem in the genome of *Janthinobacterium sp.* (GCF_000013625.1) is composed of 2 proteins: LmuA_effector_PDDEXK (WP_012078862.1)and, LmuB_SMC_Cap4_nuclease_II (WP_012078864.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Sir2 subsystem in the genome of *Paenibacillus polymyxa* (GCF_022492955.1) is composed of 4 proteins: LmuB_SMC_Cap4_nuclease_II (WP_240753063.1), LmuB_SMC_Sir2 (WP_240753064.1), LmuC_acc_Sir2 (WP_240753066.1)and, LmuA_effector_Sir2 (WP_240753072.1).
+
+
+{max-width=750px}
+
+Lamassu-Fam_FMO subsystem in the genome of *Acinetobacter johnsonii* (GCF_021496365.1) is composed of 2 proteins: LmuA_effector_FMO (WP_234965678.1)and, LmuB_SMC_FMO (WP_234965680.1).
+
+{max-width=750px}
+
+Lamassu-Fam_Amidase subsystem in the genome of *Bradyrhizobium arachidis* (GCF_015291705.1) is composed of 2 proteins: LmuA_effector_Amidase (WP_143130692.1)and, LmuB_SMC_Amidase (WP_092217687.1).
+
+## Distribution of the system among prokaryotes
+
+The Lamassu-Fam system is present in a total of 1189 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 3939 genomes (17.3 %).
+
+{max-width=750}
+
+*Proportion of genome encoding the Lamassu-Fam system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Lamassu-Fam systems were experimentally validated using:
+
+A system from *Bacillus sp. NIO-1130* in *Bacillus subtilis* has an anti-phage effect against phi3T, SpBeta, SPR (Doron et al., 2018)
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against SpBeta (Doron et al., 2018)
+
+Subsystem LmuB+LmuC+Hydrolase+ Protease with a system from *Bacillus cereus* in *Escherichia coli* has an anti-phage effect against T4 (Millman et al., 2022)
+
+Subsystem LmuB+LmuC+Hydrolase+ Protease with a system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against SpBeta, phi105, Rho14, SPP1, phi29 (Millman et al., 2022)
+
+Subsystem LmuB+LmuC+Mrr endonuclease with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi27 (Millman et al., 2022)
+
+Subsystem LmuB+LmuC+PDDEXK nuclease with a system from *Bacillus cereus* in *Escherichia coli* has an anti-phage effect against LambdaVir (Millman et al., 2022)
+
+Subsystem LmuB+LmuC+PDDEXK nuclease with a system from *Bacillus sp. UNCCL81* in *Escherichia coli* has an anti-phage effect against LambdaVir (Millman et al., 2022)
+
+Subsystem LmuA+LmuC+LmuB with a system from *Janthinobacterium agaricidamnosum* in *Escherichia coli* has an anti-phage effect against T1, T3, T7, LambdaVir, PVP-SE1 (Payne et al., 2021)
+
+Subsystem DdmABC with a system from *Vibrio cholerae* in *Escherichia coli* has an anti-phage effect against P1, Lambda (Jaskólska et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+ - 10.1038/s41586-022-04546-y
+ - 10.1126/science.aar4120
+
+---
+::
+
+
+## References
+
+1. Doron S, Melamed S, Ofir G, et al. Systematic discovery of antiphage defense systems in the microbial pangenome. *Science*. 2018;359(6379):eaar4120. doi:10.1126/science.aar4120
+
+2. Payne LJ, Todeschini TC, Wu Y, et al. Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types. *Nucleic Acids Res*. 2021;49(19):10868-10878. doi:10.1093/nar/gkab883
+
+3. Millman, A., Melamed, S., Leavitt, A., Doron, S., Bernheim, A., Hör, J., Lopatina, A., Ofir, G., Hochhauser, D., Stokar-Avihail, A., Tal, N., Sharir, S., Voichek, M., Erez, Z., Ferrer, J.L.M., Dar, D., Kacen, A., Amitai, G., Sorek, R., 2022. An expanding arsenal of immune systems that protect bacteria from phages. bioRxiv. https://doi.org/10.1101/2022.05.11.491447
diff --git a/content/2.defense-systems/lit.md b/content/2.defense-systems/lit.md
new file mode 100644
index 0000000000000000000000000000000000000000..4c83992b8084f8873a0caf87f4749f9e5318290f
--- /dev/null
+++ b/content/2.defense-systems/lit.md
@@ -0,0 +1,41 @@
+---
+title: Lit
+---
+
+## Example of genomic structure
+
+The Lit system is composed of one protein: Lit.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Lit system in the genome of *Stenotrophomonas maltophilia* (GCF_012647025.1) is composed of 1 protein: Lit (WP_061201506.1).
+
+## Distribution of the system among prokaryotes
+
+The Lit system is present in a total of 193 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 455 genomes (2.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Lit system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Lit systems were experimentally validated using:
+
+A system from *Escherichia coli defective prophage e14* in *Escherichia coli* has an anti-phage effect against T4 (Yu and Snyder, 1994)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1073/pnas.91.2.802
+ - 10.1074/jbc.M002546200
+ - 10.1186/1743-422X-7-360
+
+---
+::
diff --git a/content/2.defense-systems/menshen.md b/content/2.defense-systems/menshen.md
new file mode 100644
index 0000000000000000000000000000000000000000..5e42cc10ce6ec2d86703ae702e869ca0f4c3cbd4
--- /dev/null
+++ b/content/2.defense-systems/menshen.md
@@ -0,0 +1,41 @@
+---
+title: Menshen
+---
+
+## Example of genomic structure
+
+The Menshen system is composed of 3 proteins: NsnA, NsnB and, NsnC_2623244837.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Menshen system in the genome of *Citrobacter freundii* (GCF_003937345.2) is composed of 3 proteins: NsnA (WP_125363058.1), NsnB (WP_197964486.1)and, NsnC_2617187710 (WP_125363056.1).
+
+## Distribution of the system among prokaryotes
+
+The Menshen system is present in a total of 247 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 446 genomes (2.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Menshen system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Menshen systems were experimentally validated using:
+
+A system from *Solibacillus silvestris* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Millman et al., 2022)
+
+A system from *Solibacillus silvestris* in *Bacillus subtilis* has an anti-phage effect against Fado (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/mok_hok_sok.md b/content/2.defense-systems/mok_hok_sok.md
new file mode 100644
index 0000000000000000000000000000000000000000..f2252462ae3e31a7ecc0252cc22b6fec1531de45
--- /dev/null
+++ b/content/2.defense-systems/mok_hok_sok.md
@@ -0,0 +1,39 @@
+---
+title: Mok_Hok_Sok
+---
+
+## Example of genomic structure
+
+The Mok_Hok_Sok system is composed of 2 proteins: Mok and, Hok.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Mok_Hok_Sok system in the genome of *Raoultella terrigena* (GCF_015571975.1) is composed of 2 proteins: Hok (WP_227629320.1)and, Mok (WP_227699927.1).
+
+## Distribution of the system among prokaryotes
+
+The Mok_Hok_Sok system is present in a total of 57 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1687 genomes (7.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Mok_Hok_Sok systems were experimentally validated using:
+
+A system from *R1 plasmid of Salmonella paratyphi* in *Escherichia coli* has an anti-phage effect against T4, LambdaVir (Pecota and Wood, 1996)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1128/jb.178.7.2044-2050.1996
+
+---
+::
diff --git a/content/2.defense-systems/mokosh.md b/content/2.defense-systems/mokosh.md
new file mode 100644
index 0000000000000000000000000000000000000000..f12dee44ca638125e191710c8daf30be65bb7d78
--- /dev/null
+++ b/content/2.defense-systems/mokosh.md
@@ -0,0 +1,45 @@
+---
+title: Mokosh
+---
+
+## Example of genomic structure
+
+The Mokosh system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Mokosh_TypeI subsystem in the genome of *Vibrio alginolyticus* (GCF_022343125.1) is composed of 2 proteins: MkoB2 (WP_238970063.1)and, MkoA2 (WP_238970065.1).
+
+{max-width=750px}
+
+Mokosh_TypeII subsystem in the genome of *Shigella flexneri* (GCF_022354205.1) is composed of 1 protein: MkoC (WP_000344091.1).
+
+## Distribution of the system among prokaryotes
+
+The Mokosh system is present in a total of 605 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2540 genomes (11.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Mokosh system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Mokosh systems were experimentally validated using:
+
+Subsystem Type I with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, LambdaVir, T5, SECphi27 (Millman et al., 2022)
+
+Subsystem Type II with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against SECphi17 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/mqsrac.md b/content/2.defense-systems/mqsrac.md
new file mode 100644
index 0000000000000000000000000000000000000000..18e3160297417ac5123cbdb65825924b9be3c02e
--- /dev/null
+++ b/content/2.defense-systems/mqsrac.md
@@ -0,0 +1,26 @@
+---
+title: MqsRAC
+---
+
+## Example of genomic structure
+
+The MqsRAC system is composed of 2 proteins: mqsR and, mqsC.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+MqsRAC system in the genome of *Escherichia coli* (GCF_900636115.1) is composed of 2 proteins: mqsR (WP_024222007.1)and, mqsC (WP_021568458.1).
+
+## Distribution of the system among prokaryotes
+
+The MqsRAC system is present in a total of 18 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 26 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the MqsRAC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
diff --git a/content/2.defense-systems/nhi.md b/content/2.defense-systems/nhi.md
new file mode 100644
index 0000000000000000000000000000000000000000..ba9bb8bd9be26a57a37afb4459e6367758fb071c
--- /dev/null
+++ b/content/2.defense-systems/nhi.md
@@ -0,0 +1,47 @@
+---
+title: Nhi
+---
+
+## Example of genomic structure
+
+The Nhi system is composed of one protein: Nhi.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Nhi system in the genome of *Enterococcus avium* (GCF_003711125.1) is composed of 1 protein: Nhi (WP_148712513.1).
+
+## Distribution of the system among prokaryotes
+
+The Nhi system is present in a total of 56 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 202 genomes (0.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Nhi systems were experimentally validated using:
+
+Subsystem Nhi-like with a system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against phi3T, SpBeta, SPR (Millman et al., 2022)
+
+A system from *Staphylococcus epidermidis* in *Staphylococcus epidermidis* has an anti-phage effect against JBug18, Pike, CNPx (Bari et al., 2022)
+
+A system from *Staphylococcus epidermidis* in *Staphylococcus aureus* has an anti-phage effect against Lorac (Bari et al., 2022)
+
+A system from *Staphylococcus aureus* in *Staphylococcus aureus* has an anti-phage effect against Lorac (Bari et al., 2022)
+
+A system from *Vibrio vulnificus* in *Staphylococcus aureus* has an anti-phage effect against Lorac (Bari et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.03.001
+
+---
+::
diff --git a/content/2.defense-systems/nixi.md b/content/2.defense-systems/nixi.md
new file mode 100644
index 0000000000000000000000000000000000000000..c3278deb29d68d3be61cd69d5470246983170c3a
--- /dev/null
+++ b/content/2.defense-systems/nixi.md
@@ -0,0 +1,39 @@
+---
+title: NixI
+---
+
+## Example of genomic structure
+
+The NixI system is composed of 2 proteins: NixI and, Stix.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+NixI system in the genome of *Vibrio cholerae* (GCF_009646135.1) is composed of 2 proteins: NixI (WP_001147214.1)and, Stix (WP_000628297.1).
+
+## Distribution of the system among prokaryotes
+
+The NixI system is present in a total of 8 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 19 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the NixI system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+NixI systems were experimentally validated using:
+
+A system from *Vibrio cholerae* in *Vibrio cholerae* has an anti-phage effect against ICP1 (Legault et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1101/2021.07.12.452122
+
+---
+::
diff --git a/content/2.defense-systems/nlr.md b/content/2.defense-systems/nlr.md
new file mode 100644
index 0000000000000000000000000000000000000000..65863ccd58bf769540a2e0703c4819ec5d1644bd
--- /dev/null
+++ b/content/2.defense-systems/nlr.md
@@ -0,0 +1,59 @@
+---
+title: NLR
+---
+
+## Example of genomic structure
+
+The NLR system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+NLR_like_bNACHT01 subsystem in the genome of *Pseudomonas psychrotolerans* (GCF_001913135.1) is composed of 1 protein: NLR_like_bNACHT01 (WP_074528296.1).
+
+{max-width=750px}
+
+NLR_like_bNACHT09 subsystem in the genome of *Escherichia coli* (GCF_900636105.1) is composed of 1 protein: NLR_like_bNACHT09 (WP_089572057.1).
+
+## Distribution of the system among prokaryotes
+
+The NLR system is present in a total of 186 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 453 genomes (2.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+NLR systems were experimentally validated using:
+
+Subsystem bNACHT01 with a system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage effect against T4, T5, T6 (Kibby et al., 2022)
+
+Subsystem bNACHT02 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, MS2 (Kibby et al., 2022)
+
+Subsystem bNACHT11 with a system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Kibby et al., 2022)
+
+Subsystem bNACHT12 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, T6, MS2 (Kibby et al., 2022)
+
+Subsystem bNACHT23 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T6, T5 (Kibby et al., 2022)
+
+Subsystem bNACHT25 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, LambdaVir, MS2 (Kibby et al., 2022)
+
+Subsystem bNACHT32 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, LambdaVir, MS2 (Kibby et al., 2022)
+
+Subsystem bNACHT67 with a system from *Klebsiella michiganensis* in *Escherichia coli* has an anti-phage effect against T2, T4 (Kibby et al., 2022)
+
+Subsystem bNACHT09 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T5, LambdaVir, T3, T7 (Kibby et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1101/2022.07.19.500537
+
+---
+::
diff --git a/content/2.defense-systems/old/abi2.md b/content/2.defense-systems/old/abi2.md
new file mode 100644
index 0000000000000000000000000000000000000000..351668ba0d0859d8cafc802204b3a636c43e579d
--- /dev/null
+++ b/content/2.defense-systems/old/abi2.md
@@ -0,0 +1,27 @@
+---
+title: Abi2
+---
+
+## Example of genomic structure
+
+The Abi2 system is composed of one protein: Abi_2.
+
+Here is an example found in the RefSeq database:
+
+
+
+Abi2 system in the genome of *Clostridium butyricum* (GCF_014131795.1) is composed of 1 protein: Abi_2 (WP_035763709.1).
+
+## Distribution of the system among prokaryotes
+
+The Abi2 system is present in a total of 176 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1210 genomes (5.3 %).
+
+
+
+
+*Proportion of genome encoding the Abi2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
diff --git a/content/2.defense-systems/old/abia.md b/content/2.defense-systems/old/abia.md
new file mode 100644
index 0000000000000000000000000000000000000000..ea5fc81f4dd62e55d6c94e9568a3e85f34126888
--- /dev/null
+++ b/content/2.defense-systems/old/abia.md
@@ -0,0 +1,55 @@
+# AbiA
+
+## Example of genomic structure
+
+The AbiA system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+
+
+AbiA_large subsystem in the genome of *Lactobacillus amylovorus* (GCF_002706375.1) is composed of 1 protein: AbiA_large (WP_056940268.1).
+
+
+
+AbiA_small subsystem in the genome of *Mesobacillus foraminis* (GCF\_003667765.1) is composed of 2 proteins: AbiA\_small (WP\_121614402.1)and, AbiA\_SLATT (WP\_121614403.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiA system is present in a total of 35 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 50 genomes (0.2 %).
+
+
+
+*Proportion of genome encoding the AbiA system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+AbiA systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936, c2, P335 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.mib.2005.06.006
+ - 10.1023/A:1002027321171
+ - 10.1093/nar/gkac467
+---
+::
+
+<!-- 10.1016/j.mib.2005.06.006 -->
+
+**Chopin, M.-C., Chopin, A. & Bidnenko, E. Phage abortive infection in lactococci: variations on a theme. Curr Opin Microbiol 8, 473-479 (2005).**
+Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
+
+**Forde, A. & Fitzgerald, G. F. Bacteriophage defence systems in lactic acid bacteria. Antonie Van Leeuwenhoek 76, 89-113 (1999).**
+The study of the interactions between lactic acid bacteria and their bacteriophages has been a vibrant and rewarding research activity for a considerable number of years. In the more recent past, the application of molecular genetics for the analysis of phage-host relationships has contributed enormously to the unravelling of specific events which dictate insensitivity to bacteriophage infection and has revealed that while they are complex and intricate in nature, they are also extremely effective. In addition, the strategy has laid solid foundations for the construction of phage resistant strains for use in commercial applications and has provided a sound basis for continued investigations into existing, naturally-derived and novel, genetically-engineered defence systems. Of course, it has also become clear that phage particles are highly dynamic in their response to those defence systems which they do encounter and that they can readily adapt to them as a consequence of their genetic flexibility and plasticity. This paper reviews the exciting developments that have been described in the literature regarding the study of phage-host interactions in lactic acid bacteria and the innovative approaches that can be taken to exploit this basic information for curtailing phage infection.
+
+**Mestre, M. R. et al. UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions. Nucleic Acids Research 50, 6084-6101 (2022).**
+Reverse transcriptases (RTs) are enzymes capable of synthesizing DNA using RNA as a template. Within the last few years, a burst of research has led to the discovery of novel prokaryotic RTs with diverse antiviral properties, such as DRTs (Defense-associated RTs), which belong to the so-called group of unknown RTs (UG) and are closely related to the Abortive Infection system (Abi) RTs. In this work, we performed a systematic analysis of UG and Abi RTs, increasing the number of UG/Abi members up to 42 highly diverse groups, most of which are predicted to be functionally associated with other gene(s) or domain(s). Based on this information, we classified these systems into three major classes. In addition, we reveal that most of these groups are associated with defense functions and/or mobile genetic elements, and demonstrate the antiphage role of four novel groups. Besides, we highlight the presence of one of these systems in novel families of human gut viruses infecting members of the Bacteroidetes and Firmicutes phyla. This work lays the foundation for a comprehensive and unified understanding of these highly diverse RTs with enormous biotechnological potential.
+
diff --git a/content/2.defense-systems/old/abie.md b/content/2.defense-systems/old/abie.md
new file mode 100644
index 0000000000000000000000000000000000000000..7d9fb3716887ed135d9ac499bc6f2fb3b4f00e63
--- /dev/null
+++ b/content/2.defense-systems/old/abie.md
@@ -0,0 +1,54 @@
+---
+title: AbiE
+---
+
+## Description
+
+AbiE is a family of an anti-phage defense systems. They act through a Toxin-Antitoxin mechanism, and are comprised of a pair of genes, with one gene being toxic while the other confers immunity to this toxicity.Â
+
+It is classified as an Abortive infection system.
+
+## Molecular mechanism
+
+AbiE systems are encoded by two mandatory genes, abiEi and abiEii (1,2).  The latter encodes for AbiEii, a GTP-binding nucleotidyltransferase (NTase) which expression induce a reversible growth arrest.  On the other hand, abiEi encodes for a AbiEi a transcriptional autorepressor that  binds to the promoter of the abiE operon.
+
+Based on this mechanisms, AbiE systems are classified as Type IV Toxin-Antitoxin system, where the antitoxin and toxin are both proteins that do not directly interact with each other.
+
+## Example of genomic structure
+
+The AbiE system is composed of 2 proteins: AbiEi_1 and, AbiEii.
+
+Here is an example found in the RefSeq database:
+
+
+
+
+AbiE system in the genome of *Desulfuromonas versatilis* (GCF\_019704135.1) is composed of 2 proteins: AbiEi\_1 (WP\_221251730.1)and, AbiEii (WP\_221251731.1).
+
+## Distribution of the system among prokaryotes
+
+The AbiE system is present in a total of 962 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 3742 genomes (16.4 %).
+
+
+
+*Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+AbiE systems were experimentally validated using:
+
+A system from *lactococcal plasmid* in *lactococci* has an anti-phage effect against 936 (Chopin et al., 2005)
+
+## Relevant abstracts
+
+**Chopin, M.-C., Chopin, A. & Bidnenko, E. Phage abortive infection in lactococci: variations on a theme. Curr Opin Microbiol 8, 473-479 (2005).**
+Abortive infection (Abi) systems, also called phage exclusion, block phage multiplication and cause premature bacterial cell death upon phage infection. This decreases the number of progeny particles and limits their spread to other cells allowing the bacterial population to survive. Twenty Abi systems have been isolated in Lactococcus lactis, a bacterium used in cheese-making fermentation processes, where phage attacks are of economical importance. Recent insights in their expression and mode of action indicate that, behind diverse phenotypic and molecular effects, lactococcal Abis share common traits with the well-studied Escherichia coli systems Lit and Prr. Abis are widespread in bacteria, and recent analysis indicates that Abis might have additional roles other than conferring phage resistance.
+
+**Dy, R. L., Przybilski, R., Semeijn, K., Salmond, G. P. C. & Fineran, P. C. A widespread bacteriophage abortive infection system functions through a Type IV toxin-antitoxin mechanism. Nucleic Acids Res 42, 4590-4605 (2014).**
+Bacterial abortive infection (Abi) systems are 'altruistic' cell death systems that are activated by phage infection and limit viral replication, thereby providing protection to the bacterial population. Here, we have used a novel approach of screening Abi systems as a tool to identify and characterize toxin-antitoxin (TA)-acting Abi systems. We show that AbiE systems are encoded by bicistronic operons and function via a non-interacting (Type IV) bacteriostatic TA mechanism. The abiE operon was negatively autoregulated by the antitoxin, AbiEi, a member of a widespread family of putative transcriptional regulators. AbiEi has an N-terminal winged-helix-turn-helix domain that is required for repression of abiE transcription, and an uncharacterized bi-functional C-terminal domain, which is necessary for transcriptional repression and sufficient for toxin neutralization. The cognate toxin, AbiEii, is a predicted nucleotidyltransferase (NTase) and member of the DNA polymerase ? family. AbiEii specifically bound GTP, and mutations in conserved NTase motifs (I-III) and a newly identified motif (IV), abolished GTP binding and subsequent toxicity. The AbiE systems can provide phage resistance and enable stabilization of mobile genetic elements, such as plasmids. Our study reveals molecular insights into the regulation and function of the widespread bi-functional AbiE Abi-TA systems and the biochemical properties of both toxin and antitoxin proteins.
+
+**Forde, A. & Fitzgerald, G. F. Bacteriophage defence systems in lactic acid bacteria. Antonie Van Leeuwenhoek 76, 89-113 (1999).**
+The study of the interactions between lactic acid bacteria and their bacteriophages has been a vibrant and rewarding research activity for a considerable number of years. In the more recent past, the application of molecular genetics for the analysis of phage-host relationships has contributed enormously to the unravelling of specific events which dictate insensitivity to bacteriophage infection and has revealed that while they are complex and intricate in nature, they are also extremely effective. In addition, the strategy has laid solid foundations for the construction of phage resistant strains for use in commercial applications and has provided a sound basis for continued investigations into existing, naturally-derived and novel, genetically-engineered defence systems. Of course, it has also become clear that phage particles are highly dynamic in their response to those defence systems which they do encounter and that they can readily adapt to them as a consequence of their genetic flexibility and plasticity. This paper reviews the exciting developments that have been described in the literature regarding the study of phage-host interactions in lactic acid bacteria and the innovative approaches that can be taken to exploit this basic information for curtailing phage infection.
+
diff --git a/content/2.defense-systems/old/avast.md b/content/2.defense-systems/old/avast.md
new file mode 100644
index 0000000000000000000000000000000000000000..7909a710c29fc096b4daeaef7d483e34df426a66
--- /dev/null
+++ b/content/2.defense-systems/old/avast.md
@@ -0,0 +1,103 @@
+---
+title: AVAST
+---
+
+## Description
+AVAST (antiviral ATPases/NTPases of the STAND superfamily) is a group of anti-phage defense systems, active against some dsDNA phages.Â
+
+AVAST systems are composed of NTPases of the STAND (signal transduction ATPases with numerous associated domains) superfamily (1). Â STAND-NTPases typically contain a C-terminal helical sensor domain that activates the N-terminal effector domain upon target recognition (1).
+
+In eukaryotes, STAND-NTPases are associated with programmed cell death, therefore Gao and colleagues hypothesized that AVAST might function through an Abortive infection mechanism.
+
+## Example of genomic structure
+
+The AVAST system have been describe in a total of 5 subsystems.
+
+Here is some example found in the RefSeq database:
+
+
+
+
+AVAST_I subsystem in the genome of *Vibrio sp.* (GCF\_905175355.1) is composed of 3 proteins: Avs1A (WP\_208445041.1), Avs1B (WP\_208445042.1)and, Avs1C (WP_108173272.1).
+
+
+
+
+AVAST_II subsystem in the genome of *Escherichia coli* (GCF_018884505.1) is composed of 1 protein: Avs2A (WP_032199984.1).
+
+
+
+
+AVAST_III subsystem in the genome of *Enterobacter cancerogenus* (GCF_002850575.1) is composed of 2 proteins: Avs3B (WP_199559884.1)and, Avs3A (WP_101737373.1).
+
+
+
+
+AVAST_IV subsystem in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: Avs4A (WP_000240574.1).
+
+
+
+
+AVAST_V subsystem in the genome of *Leclercia adecarboxylata* (GCF_006171285.1) is composed of 1 protein: Avs5A (WP_139565349.1).
+
+## Distribution of the system among prokaryotes
+
+The AVAST system is present in a total of 363 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1046 genomes (4.6 %).
+
+
+
+*Proportion of genome encoding the AVAST system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+AVAST systems were experimentally validated using:
+
+Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Escherichia coli* has an anti-phage effect against T4, Lambda, HK97, HK544, HK578, T7 (Fillol-Salom et al., 2022)
+
+Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Salmonella enterica * has an anti-phage effect against P22, BTP1, ES18, det7 (Fillol-Salom et al., 2022)
+
+Subsystem SIR2-STAND with a system from *Escherichia fergusonii's PICI (EfCIRHB19-C05)* in *Klebsiella pneumoniae * has an anti-phage effect against Pokey (Fillol-Salom et al., 2022)
+
+Subsystem Metallo beta-lactamase + protease + STAND (Type 1) with a system from *Erwinia piriflorinigrans* in *Escherichia coli* has an anti-phage effect against P1 (Gao et al., 2020)
+
+Subsystem STAND (Type 2) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, P1 (Gao et al., 2020)
+
+Subsystem DUF4297-STAND (Type 3) with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T2, T3, T7, PhiV-1 (Gao et al., 2020)
+
+Subsystem Mrr-STAND (Type 4) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T3, T7, PhiV-1 (Gao et al., 2020)
+
+Subsystem SIR2-STAND (Type 5) with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2 (Gao et al., 2020)
+
+Subsystem SeAvs1 with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against P1, ZL-19 (Gao et al., 2022)
+
+Subsystem EcAcs1 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against ZL-19 (Gao et al., 2022)
+
+Subsystem EpAvs1 with a system from *Erwinia piriflorinigrans* in *Escherichia coli* has an anti-phage effect against P1, Lambda, , ZL-19 (Gao et al., 2022)
+
+Subsystem SeAvs3 with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
+
+Subsystem KvAvs3 with a system from *Klebsiella variicola* in *Escherichia coli* has an anti-phage effect against P1, ZL-19 (Gao et al., 2022)
+
+Subsystem EcAvs2 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, P1, T4, T5, ZL-19 (Gao et al., 2022)
+
+Subsystem Ec2Avs2 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1 (Gao et al., 2022)
+
+Subsystem EcAvs4 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
+
+Subsystem Ec2Avs4 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, PhiV-1, ZL-19 (Gao et al., 2022)
+
+Subsystem KpAvs4 with a system from *Klebsiella pneumoniae* in *Escherichia coli* has an anti-phage effect against ZL-19 (Gao et al., 2022)
+
+Subsystem CcAvs4 with a system from *Corallococcus coralloides* in *Escherichia coli* has an anti-phage effect against T7 (Gao et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.abm4096
+ - 10.1126/science.aba0372
+---
+::
\ No newline at end of file
diff --git a/content/2.defense-systems/old/gao_rl.md b/content/2.defense-systems/old/gao_rl.md
new file mode 100644
index 0000000000000000000000000000000000000000..04853174ba633c1f5960badcd5e2f803cc39dabb
--- /dev/null
+++ b/content/2.defense-systems/old/gao_rl.md
@@ -0,0 +1,33 @@
+# Gao\_RL
+
+## Example of genomic structure
+
+The Gao\_RL system is composed of 4 proteins: RL\_D, RL\_C, RL\_B and, RL\_A.
+
+Here is an example found in the RefSeq database:
+
+
+
+Gao\\_RL system in the genome of \*Morganella morganii\* (GCF\\_020790175.1) is composed of 4 proteins: RL\\_D (WP\\_064483389.1), RL\\_C (WP\\_064483388.1), RL\\_B (WP\\_064483387.1)and, RL\\_A (WP\\_064483386.1).
+
+## Distribution of the system among prokaryotes
+
+The Gao\_RL system is present in a total of 77 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 133 genomes (0.6 %).
+
+
+
+\*Proportion of genome encoding the Gao\_RL system for the 14 phyla with more than 50 genomes in the RefSeq database.\*
+
+## Experimental validation
+
+Gao\_RL systems were experimentally validated using:
+
+A system from \*Escherichia coli\* in \*Escherichia coli\* has an anti-phage effect against P1, Lambda, M13 (Gao et al., 2020)
+
+## Relevant abstracts
+
+\*\*Gao, L. et al. Diverse enzymatic activities mediate antiviral immunity in prokaryotes. Science 369, 1077-1084 (2020).\*\*
+Bacteria and archaea are frequently attacked by viruses and other mobile genetic elements and rely on dedicated antiviral defense systems, such as restriction endonucleases and CRISPR, to survive. The enormous diversity of viruses suggests that more types of defense systems exist than are currently known. By systematic defense gene prediction and heterologous reconstitution, here we discover 29 widespread antiviral gene cassettes, collectively present in 32% of all sequenced bacterial and archaeal genomes, that mediate protection against specific bacteriophages. These systems incorporate enzymatic activities not previously implicated in antiviral defense, including RNA editing and retron satellite DNA synthesis. In addition, we computationally predict a diverse set of other putative defense genes that remain to be characterized. These results highlight an immense array of molecular functions that microbes use against viruses.
+
diff --git a/content/2.defense-systems/paris.md b/content/2.defense-systems/old/paris.md
similarity index 100%
rename from content/2.defense-systems/paris.md
rename to content/2.defense-systems/old/paris.md
diff --git a/content/2.defense-systems/old/rm.md b/content/2.defense-systems/old/rm.md
new file mode 100644
index 0000000000000000000000000000000000000000..8855525f9ade6b966b483c7e88bf297eb2e7fe5f
--- /dev/null
+++ b/content/2.defense-systems/old/rm.md
@@ -0,0 +1,43 @@
+# RM
+
+## Example of genomic structure
+
+The RM system have been describe in a total of 5 subsystems.
+
+Here is some example found in the RefSeq database:
+
+<img src="./data/RM_Type_I.svg">
+
+RM\_Type\_I subsystem in the genome of *Aeromonas veronii* (GCF\_014169835.1) is composed of 4 proteins: Type\_I\_MTases (WP\_182963881.1), Type\_I\_MTases (WP\_182963881.1), Type\_I\_S (WP\_182963883.1)and, Type\_I\_REases (WP\_182963884.1).
+
+<img src="./data/RM_Type_II.svg">
+
+RM\_Type\_II subsystem in the genome of *Mannheimia haemolytica* (GCF\_007965905.1) is composed of 2 proteins: Type\_II\_MTases (WP\_006248352.1)and, Type\_II\_REases (WP\_006253295.1).
+
+<img src="./data/RM_Type_IIG.svg">
+
+RM\_Type\_IIG subsystem in the genome of *Spirochaeta africana* (GCF\_000242595.2) is composed of 1 protein: Type\_IIG (WP\_014455422.1).
+
+<img src="./data/RM_Type_III.svg">
+
+RM\_Type\_III subsystem in the genome of *Pannonibacter phragmitetus* (GCF\_001484065.1) is composed of 2 proteins: Type\_III\_MTases (WP\_058898889.1)and, Type\_III\_REases (WP\_058898890.1).
+
+<img src="./data/RM_Type_IV.svg">
+
+RM\_Type\_IV subsystem in the genome of *Clostridioides difficile* (GCF\_018884605.1) is composed of 1 protein: Type\_IV\_REases (WP\_021364579.1).
+
+## Distribution of the system among prokaryotes
+
+The RM system is present in a total of 4699 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 19087 genomes (83.7 %).
+
+<img src="./data/Distribution_RM.svg" max-width=800px>
+
+*Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Relevant abstracts
+
+**Oliveira, P. H., Touchon, M. & Rocha, E. P. C. The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts. Nucleic Acids Res 42, 10618-10631 (2014).**
+The roles of restriction-modification (R-M) systems in providing immunity against horizontal gene transfer (HGT) and in stabilizing mobile genetic elements (MGEs) have been much debated. However, few studies have precisely addressed the distribution of these systems in light of HGT, its mechanisms and its vectors. We analyzed the distribution of R-M systems in 2261 prokaryote genomes and found their frequency to be strongly dependent on the presence of MGEs, CRISPR-Cas systems, integrons and natural transformation. Yet R-M systems are rare in plasmids, in prophages and nearly absent from other phages. Their abundance depends on genome size for small genomes where it relates with HGT but saturates at two occurrences per genome. Chromosomal R-M systems might evolve under cycles of purifying and relaxed selection, where sequence conservation depends on the biochemical activity and complexity of the system and total gene loss is frequent. Surprisingly, analysis of 43 pan-genomes suggests that solitary R-M genes rarely arise from the degradation of R-M systems. Solitary genes are transferred by large MGEs, whereas complete systems are more frequently transferred autonomously or in small MGEs. Our results suggest means of testing the roles for R-M systems and their associations with MGEs.
+
diff --git a/content/2.defense-systems/old/viperin.md b/content/2.defense-systems/old/viperin.md
new file mode 100644
index 0000000000000000000000000000000000000000..bf468f346510958814441f3a019afd8cfec568bc
--- /dev/null
+++ b/content/2.defense-systems/old/viperin.md
@@ -0,0 +1,87 @@
+---
+title: Viperin
+layout: article
+---
+
+## Description
+
+Viperins, for “Virus Inhibitory Protein, Endoplasmic Reticulum-associated, INterferon-inducibleâ€, are antiviral enzymes whose expression is stimulated by interferons in eukaryotic cells. They are important components of eukaryotic innate immunity, and present antiviral activity against a wide diversity of viruses, including double-stranded DNA viruses, single-strand RNA viruses and retroviruses (1).
+
+Recently, Viperin-like enzymes were found in prokaryotes (pVips). Strikingly, like their eukaryotic counter-part with eukaryotic viruses, pVips provide clear protection against phage infection to their host, and therefore constitute a new defense system (2). Like eukaryotic Viperins, pVips produce modified nucleotides that block phage transcription, acting as chain terminators. They constitute a form of chemical defense. A recent study reported that pVips can be found in around 0.5% of prokaryotic genomes (3).
+
+## Molecular mechanism
+
+
+Fig.1: Catalytic activity of human Viperin generates ddhCTP (Ebrahimi et al. al., 2020)
+
+Viperins are members of the radical S-adenosylmethionine (rSAM) superfamily. This group of enzymes use a \[4Fe-4S\] cluster to cleave S-adenosylmethionine (SAM) reductively, generating a radical which is generally transferred to a substrate. It was demonstrated that through their \[4Fe-4S\] cluster catalytic activity, eukaryotic viperins convert a ribonucleotide, the cytidine triphosphate (CTP) into a modified ribonucleotide, the 3′-deoxy-3′,4′-didehydro-CTP (ddhCTP) (4,5).
+
+Prokaryotic Viperins also convert ribonucleotides triphosphate into modified ribonucleotides, but contrary to their eukaryotic counterparts can use a diversity of substrates to produce ddhCTP, or ddh-guanosine triphosphate (ddhGTP), or ddh-uridine triphosphate (ddhUTP), or several of these nucleotides for certain pVips (2).
+
+Compared to the initial ribonucleotide triphosphate, the modified ddh-nucleotide product of Viperins lacks a hydroxyl group at the 3′ carbon of the ribose (Fig.1). The ddh-nucleotides produced by Viperins can be used as substrates by some viral RNA polymerases. Because of their lost hydroxyl group at the 3’carbon of the ribose, once incorporated into the newly forming viral RNA chain, these ddh-nucleotides act as chain terminators. By preventing further polymerization of the viral RNA chain, ddh-nucleotides can inhibit viral replication (2,4,5).
+
+## Example of genomic structure
+
+The Viperin system is composed of one protein: pVip.
+
+Here is an example found in the RefSeq database:
+
+<img src="./data/Viperin.svg">
+
+Viperin system in the genome of *Moritella yayanosii* is composed of 1 protein: pVip (WP\_112711942.1).
+
+## Distribution of the system among prokaryotes
+
+The Viperin system is present in a total of 85 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 118 genomes (0.5 %).
+
+<img src="./data/Distribution_Viperin.svg" max-width=800px>
+
+*Proportion of genome encoding the Viperin system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Viperin systems were experimentally validated using:
+
+Subsystem pVip6 with a system from *Selenomonas ruminatium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip7 with a system from *Fibrobacter sp. UWT3* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip9 with a system from *Vibrio porteresiae* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip12 with a system from *Ruegeria intermedia* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip15 with a system from *Coraliomargarita akajimensis* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip21 with a system from *Lewinella persica* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip32 with a system from *Phormidium sp. OSCR GFM* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip34 with a system from *Cryomorphaceae bacterium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip37 with a system from *Shewanella sp. cp20* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip39 with a system from *Burkholderiales-76 (UID4002)* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip44 with a system from *Chondromyces crocatus* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip46 with a system from *Photobacterium swingsii* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip57 with a system from *Flavobacterium lacus* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip58 with a system from *Pseudoalteromonas ulvae* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip60 with a system from *Lacinutrix sp. JCM 13824* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip61 with a system from *Euryarchaeota archaeon SCGC AG-487_M08* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip62 with a system from *Fibrobacteria bacterium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+Subsystem pVip63 with a system from *Pseudoalteromonas sp. XI10* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+
+## Relevant abstracts
+
+**Bernheim, A. et al. Prokaryotic viperins produce diverse antiviral molecules. Nature 589, 120-124 (2021).**
+Viperin is an interferon-induced cellular protein that is conserved in animals1. It has previously been shown to inhibit the replication of multiple viruses by producing the ribonucleotide 3?-deoxy-3?,4?-didehydro (ddh)-cytidine triphosphate (ddhCTP), which acts as a chain terminator for viral RNA polymerase2. Here we show that eukaryotic viperin originated from a clade of bacterial and archaeal proteins that protect against phage infection. Prokaryotic viperins produce a set of modified ribonucleotides that include ddhCTP, ddh-guanosine triphosphate (ddhGTP) and ddh-uridine triphosphate (ddhUTP). We further show that prokaryotic viperins protect against T7 phage infection by inhibiting viral polymerase-dependent transcription, suggesting that it has an antiviral mechanism of action similar to that of animal viperin. Our results reveal a class of potential natural antiviral compounds produced by bacterial immune systems.
+
diff --git a/content/2.defense-systems/old_exonuclease.md b/content/2.defense-systems/old_exonuclease.md
new file mode 100644
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--- /dev/null
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+---
+title: Old_exonuclease
+---
+
+## Example of genomic structure
+
+The Old_exonuclease system is composed of one protein: Old_exonuclease.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Old_exonuclease system in the genome of *Escherichia coli* (GCF_016904335.1) is composed of 1 protein: Old_exonuclease (WP_015979595.1).
+
+## Distribution of the system among prokaryotes
+
+The Old_exonuclease system is present in a total of 53 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 102 genomes (0.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Old_exonuclease system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Old_exonuclease systems were experimentally validated using:
+
+A system from *Enterobacteria phage P2* in *Escherichia coli* has an anti-phage effect against Lambda, T4, LF82_P8, Al505_P2 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+**Rousset, F. et al. Phages and their satellites encode hotspots of antiviral systems. Cell Host & Microbe 30, 740-753.e5 (2022).**
+Bacteria carry diverse genetic systems to defend against viral infection, some of which are found within prophages where they inhibit competing viruses. Phage satellites pose additional pressures on phages by hijacking key viral elements to their own benefit. Here, we show that E. coli P2-like phages and their parasitic P4-like satellites carry hotspots of genetic variation containing reservoirs of anti-phage systems. We validate the activity of diverse systems and describe PARIS, an abortive infection system triggered by a phage-encoded anti-restriction protein. Antiviral hotspots participate in inter-viral competition and shape dynamics between the bacterial host, P2-like phages, and P4-like satellites. Notably, the anti-phage activity of satellites can benefit the helper phage during competition with virulent phages, turning a parasitic relationship into a mutualistic one. Anti-phage hotspots are present across distant species and constitute a substantial source of systems that participate in the competition between mobile genetic elements.
+
diff --git a/content/2.defense-systems/olokun.md b/content/2.defense-systems/olokun.md
new file mode 100644
index 0000000000000000000000000000000000000000..5666fa4f5ab8a2d4dae3219979a421f9761d8e10
--- /dev/null
+++ b/content/2.defense-systems/olokun.md
@@ -0,0 +1,39 @@
+---
+title: Olokun
+---
+
+## Example of genomic structure
+
+The Olokun system is composed of 2 proteins: OloA and, OloB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Olokun system in the genome of *Vibrio cyclitrophicus* (GCF_023206035.1) is composed of 2 proteins: OloA (WP_016800143.1)and, OloB (WP_029203700.1).
+
+## Distribution of the system among prokaryotes
+
+The Olokun system is present in a total of 132 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 252 genomes (1.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Olokun system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Olokun systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi27 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/pago.md b/content/2.defense-systems/pago.md
new file mode 100644
index 0000000000000000000000000000000000000000..d8f63877200c77a0d8ae425bc357cd68439a6420
--- /dev/null
+++ b/content/2.defense-systems/pago.md
@@ -0,0 +1,60 @@
+---
+title: pAgo
+---
+
+## Example of genomic structure
+
+The pAgo system is composed of one protein: pAgo_Short.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+pAgo system in the genome of *Ensifer adhaerens* (GCF_020405145.1) is composed of 1 protein: pAgo_LongB (WP_218685258.1).
+
+## Distribution of the system among prokaryotes
+
+The pAgo system is present in a total of 435 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 598 genomes (2.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+pAgo systems were experimentally validated using:
+
+Subsystem Ago with a system from *Clostridium butyricum* in *Escherichia coli* has an anti-phage effect against M13, P1vir (Kuzmenko et al., 2020)
+
+A system from *Natronobacterium gregoryi* in *Escherichia coli* has an anti-phage effect against T7 (Xing et al., 2022)
+
+Subsystem GsSir2/Ago with a system from *Geobacter sulfurreducens* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi27 (Zaremba et al., 2022)
+
+Subsystem GsSir2/Ago with a system from *Geobacter sulfurreducens* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi27 (Zaremba et al., 2022)
+
+Subsystem CcSir2/Ago with a system from *Caballeronia cordobensis* in *Escherichia coli* has an anti-phage effect against LambdaVir (Zaremba et al., 2022)
+
+Subsystem PgSir2/Ago with a system from *araburkholderia graminis* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi27 (Zaremba et al., 2022)
+
+Subsystem Ago with a system from *Exiguobacterium marinum* in *Escherichia coli* has an anti-phage effect against P1vir (Lisitskaya et al., 2022)
+
+Subsystem Sir2/Ago with a system from *Geobacter sulfurreducens* in *Escherichia coli* has an anti-phage effect against LambdaVir (Garb et al., 2022)
+
+Subsystem SiAgo/Aga1/Aga2 with a system from *Sulfolobus islandicus* in *Sulfolobus islandicus* has an anti-phage effect against SMV1 (Zeng et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.cell.2022.03.012
+ - 10.1016/j.chom.2022.04.015
+ - 10.1038/s41564-022-01207-8
+ - 10.1038/s41586-020-2605-1
+ - 10.1186/1745-6150-4-29
+ - 10.1038/s41564-022-01239-0
+
+---
+::
diff --git a/content/2.defense-systems/pd-lambda-1.md b/content/2.defense-systems/pd-lambda-1.md
new file mode 100644
index 0000000000000000000000000000000000000000..571ee3d71e4ab559d14dd93d124042999ea80504
--- /dev/null
+++ b/content/2.defense-systems/pd-lambda-1.md
@@ -0,0 +1,39 @@
+---
+title: PD-Lambda-1
+---
+
+## Example of genomic structure
+
+The PD-Lambda-1 system is composed of one protein: PD-Lambda-1.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-Lambda-1 system in the genome of *Olleya sp.* (GCF_002831645.1) is composed of 1 protein: PD-Lambda-1 (WP_101017806.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-Lambda-1 system is present in a total of 445 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1323 genomes (5.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-Lambda-1 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-lambda-2.md b/content/2.defense-systems/pd-lambda-2.md
new file mode 100644
index 0000000000000000000000000000000000000000..bc411f6688a4d8440e24a8d0a60120bd29872fa9
--- /dev/null
+++ b/content/2.defense-systems/pd-lambda-2.md
@@ -0,0 +1,39 @@
+---
+title: PD-Lambda-2
+---
+
+## Example of genomic structure
+
+The PD-Lambda-2 system is composed of 3 proteins: PD-Lambda-2_C, PD-Lambda-2_B and, PD-Lambda-2_A.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-Lambda-2 system in the genome of *Pseudomonas aeruginosa* (GCF_013341295.1) is composed of 3 proteins: PD-Lambda-2_C (WP_023115149.1), PD-Lambda-2_B (WP_014833925.1)and, PD-Lambda-2_A (WP_003116393.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-Lambda-2 system is present in a total of 52 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 122 genomes (0.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-Lambda-2 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi17, SECphi18, SECphi27, T3 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-lambda-3.md b/content/2.defense-systems/pd-lambda-3.md
new file mode 100644
index 0000000000000000000000000000000000000000..d0f21b11209e7fb955def9fe3ed536bb5c724305
--- /dev/null
+++ b/content/2.defense-systems/pd-lambda-3.md
@@ -0,0 +1,39 @@
+---
+title: PD-Lambda-3
+---
+
+## Example of genomic structure
+
+The PD-Lambda-3 system is composed of 2 proteins: PD-Lambda-3_B and, PD-Lambda-3_A.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-Lambda-3 system in the genome of *Serratia rubidaea* (GCF_900478395.1) is composed of 2 proteins: PD-Lambda-3_A (WP_227673955.1)and, PD-Lambda-3_B (WP_047063039.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-Lambda-3 system is present in a total of 24 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 74 genomes (0.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-Lambda-3 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-lambda-4.md b/content/2.defense-systems/pd-lambda-4.md
new file mode 100644
index 0000000000000000000000000000000000000000..bbcbacb41185e06a46bc0a96406631ed91065c38
--- /dev/null
+++ b/content/2.defense-systems/pd-lambda-4.md
@@ -0,0 +1,39 @@
+---
+title: PD-Lambda-4
+---
+
+## Example of genomic structure
+
+The PD-Lambda-4 system is composed of 2 proteins: PD-Lambda-4_A and, PD-Lambda-4_B.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-Lambda-4 system in the genome of *Enterobacter asburiae* (GCF_023023265.1) is composed of 2 proteins: PD-Lambda-4_A (WP_246916891.1)and, PD-Lambda-4_B (WP_241182936.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-Lambda-4 system is present in a total of 13 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 75 genomes (0.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-Lambda-4 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, LambdaVir, SECphi27, T7 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-lambda-5.md b/content/2.defense-systems/pd-lambda-5.md
new file mode 100644
index 0000000000000000000000000000000000000000..d6b6524963964083107eb0c20cddb0f2ece37306
--- /dev/null
+++ b/content/2.defense-systems/pd-lambda-5.md
@@ -0,0 +1,39 @@
+---
+title: PD-Lambda-5
+---
+
+## Example of genomic structure
+
+The PD-Lambda-5 system is composed of 2 proteins: PD-Lambda-5_A and, PD-Lambda-5_B.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-Lambda-5 system in the genome of *Chromobacterium rhizoryzae* (GCF_020544465.1) is composed of 2 proteins: PD-Lambda-5_B (WP_227108065.1)and, PD-Lambda-5_A (WP_227108067.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-Lambda-5 system is present in a total of 210 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 361 genomes (1.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-Lambda-5 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, LambdaVir, SECphi17, SECphi18, SECphi27, T3, T7 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-lambda-6.md b/content/2.defense-systems/pd-lambda-6.md
new file mode 100644
index 0000000000000000000000000000000000000000..4a1236edcf6b40fd751f53dd2ed9d84a9d8f753b
--- /dev/null
+++ b/content/2.defense-systems/pd-lambda-6.md
@@ -0,0 +1,39 @@
+---
+title: PD-Lambda-6
+---
+
+## Example of genomic structure
+
+The PD-Lambda-6 system is composed of one protein: PD-Lambda-6.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-Lambda-6 system in the genome of *Escherichia albertii* (GCF_003864095.1) is composed of 1 protein: PD-Lambda-6 (WP_125059614.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-Lambda-6 system is present in a total of 12 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 21 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-Lambda-6 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, T5 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-1.md b/content/2.defense-systems/pd-t4-1.md
new file mode 100644
index 0000000000000000000000000000000000000000..0763a2cfbf0d7a174651b65be400aef5f8c4b99d
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-1.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-1
+---
+
+## Example of genomic structure
+
+The PD-T4-1 system is composed of one protein: PD-T4-1.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-1 system in the genome of *Bradyrhizobium diazoefficiens* (GCF_016616885.1) is composed of 1 protein: PD-T4-1 (WP_200471933.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-1 system is present in a total of 38 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 209 genomes (0.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-1 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1371/journal.pgen.1010065
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-10.md b/content/2.defense-systems/pd-t4-10.md
new file mode 100644
index 0000000000000000000000000000000000000000..f0a38fec5c9fbd237cccd09b9eec7292d177c772
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-10.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-10
+---
+
+## Example of genomic structure
+
+The PD-T4-10 system is composed of 2 proteins: PD-T4-10_B and, PD-T4-10_A.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-10 system in the genome of *Salmonella enterica* (GCF_022559465.1) is composed of 2 proteins: PD-T4-10_A (WP_109288182.1)and, PD-T4-10_B (WP_001585426.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-10 system is present in a total of 40 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 68 genomes (0.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-10 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, T5, SECphi27 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1371/journal.pgen.1010065
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-2.md b/content/2.defense-systems/pd-t4-2.md
new file mode 100644
index 0000000000000000000000000000000000000000..52d9c9cc41daec69f8ca780b6b6b6123efe5ebf9
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-2.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-2
+---
+
+## Example of genomic structure
+
+The PD-T4-2 system is composed of 2 proteins: PD-T4-2_B and, PD-T4-2_A.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-2 system in the genome of *Microcystis viridis* (GCF_003945305.1) is composed of 2 proteins: PD-T4-2_B (WP_164517006.1)and, PD-T4-2_A (WP_125731928.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-2 system is present in a total of 28 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 33 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-2 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, T5, SECphi27 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-3.md b/content/2.defense-systems/pd-t4-3.md
new file mode 100644
index 0000000000000000000000000000000000000000..2960a39e266504f145ccf2a5ec36eb5a1a93794d
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-3.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-3
+---
+
+## Example of genomic structure
+
+The PD-T4-3 system is composed of one protein: PD-T4-3.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-3 system in the genome of *Salmonella enterica* (GCF_009664795.1) is composed of 1 protein: PD-T4-3 (WP_000353908.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-3 system is present in a total of 139 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1313 genomes (5.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-3 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-4.md b/content/2.defense-systems/pd-t4-4.md
new file mode 100644
index 0000000000000000000000000000000000000000..72f7e98227e9d2629a63218746084fd94e363df2
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-4.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-4
+---
+
+## Example of genomic structure
+
+The PD-T4-4 system is composed of 2 proteins: PD-T4-4_A and, PD-T4-4_B.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-4 system in the genome of *Escherichia coli* (GCF_013376895.1) is composed of 2 proteins: PD-T4-4_B (WP_176670803.1)and, PD-T4-4_A (WP_027920142.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-4 system is present in a total of 40 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 53 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-4 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, SECphi17 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-5.md b/content/2.defense-systems/pd-t4-5.md
new file mode 100644
index 0000000000000000000000000000000000000000..7850e3fa10babf8909188893126bcb31b86fb641
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-5.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-5
+---
+
+## Example of genomic structure
+
+The PD-T4-5 system is composed of one protein: PD-T4-5.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-5 system in the genome of *Achromobacter sp.* (GCF_020541125.1) is composed of 1 protein: PD-T4-5 (WP_180098530.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-5 system is present in a total of 113 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 587 genomes (2.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-5 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, T6, LambdaVir, T5 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-6.md b/content/2.defense-systems/pd-t4-6.md
new file mode 100644
index 0000000000000000000000000000000000000000..11eb6d31a36e08b7b5b450d30d10f55f2adb1aa3
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-6.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-6
+---
+
+## Example of genomic structure
+
+The PD-T4-6 system is composed of one protein: PD-T4-6.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-6 system in the genome of *Pseudomonas aeruginosa* (GCF_016584725.1) is composed of 1 protein: PD-T4-6 (WP_023875836.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-6 system is present in a total of 18 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 88 genomes (0.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-6 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-7.md b/content/2.defense-systems/pd-t4-7.md
new file mode 100644
index 0000000000000000000000000000000000000000..4a83401af615954f7e729442d1d212289736af8a
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-7.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-7
+---
+
+## Example of genomic structure
+
+The PD-T4-7 system is composed of one protein: PD-T4-7.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-7 system in the genome of *Providencia alcalifaciens* (GCF_915401745.1) is composed of 1 protein: PD-T4-7 (WP_036975088.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-7 system is present in a total of 97 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 156 genomes (0.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-7 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-7 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-8.md b/content/2.defense-systems/pd-t4-8.md
new file mode 100644
index 0000000000000000000000000000000000000000..a6506dbb3231716c82c7ca3f7444031d143fea43
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-8.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-8
+---
+
+## Example of genomic structure
+
+The PD-T4-8 system is composed of one protein: PD-T4-8.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-8 system in the genome of *Pectobacterium brasiliense* (GCF_001932635.1) is composed of 1 protein: PD-T4-8 (WP_075277998.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-8 system is present in a total of 48 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 91 genomes (0.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-8 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-8 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, SECphi18, SECphi27 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t4-9.md b/content/2.defense-systems/pd-t4-9.md
new file mode 100644
index 0000000000000000000000000000000000000000..aa720c314c2c90d1257c0ce36732eee8d2283664
--- /dev/null
+++ b/content/2.defense-systems/pd-t4-9.md
@@ -0,0 +1,39 @@
+---
+title: PD-T4-9
+---
+
+## Example of genomic structure
+
+The PD-T4-9 system is composed of 3 proteins: PD-T4-9_C, PD-T4-9_B and, PD-T4-9_A.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T4-9 system in the genome of *Escherichia coli* (GCF_018223665.1) is composed of 3 proteins: PD-T4-9_A (WP_061089969.1), PD-T4-9_B (WP_061089970.1)and, PD-T4-9_C (WP_061089971.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T4-9 system is present in a total of 93 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 148 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T4-9 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T4-9 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t7-1.md b/content/2.defense-systems/pd-t7-1.md
new file mode 100644
index 0000000000000000000000000000000000000000..e57a9d3d9830da951772d5afca8347f8b11a8827
--- /dev/null
+++ b/content/2.defense-systems/pd-t7-1.md
@@ -0,0 +1,39 @@
+---
+title: PD-T7-1
+---
+
+## Example of genomic structure
+
+The PD-T7-1 system is composed of one protein: PD-T7-1.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T7-1 system in the genome of *Escherichia coli* (GCF_007833255.1) is composed of 1 protein: PD-T7-1 (WP_000008839.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T7-1 system is present in a total of 136 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 755 genomes (3.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T7-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T7-1 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7(Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t7-2.md b/content/2.defense-systems/pd-t7-2.md
new file mode 100644
index 0000000000000000000000000000000000000000..dba107acf8b15f71ff95fdf52dd47a049fbfb4bd
--- /dev/null
+++ b/content/2.defense-systems/pd-t7-2.md
@@ -0,0 +1,39 @@
+---
+title: PD-T7-2
+---
+
+## Example of genomic structure
+
+The PD-T7-2 system is composed of 2 proteins: PD-T7-2_A and, PD-T7-2_B.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T7-2 system in the genome of *Sphingobium amiense* (GCF_003967075.1) is composed of 2 proteins: PD-T7-2_B (WP_066704003.1)and, PD-T7-2_A (WP_066704000.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T7-2 system is present in a total of 606 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1535 genomes (6.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T7-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T7-2 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, LambdaVir, T5, SECphi18, SECphi27, T3, T7 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t7-3.md b/content/2.defense-systems/pd-t7-3.md
new file mode 100644
index 0000000000000000000000000000000000000000..f09d0871f10d8c13d3781e22cc32cae20882fd8f
--- /dev/null
+++ b/content/2.defense-systems/pd-t7-3.md
@@ -0,0 +1,39 @@
+---
+title: PD-T7-3
+---
+
+## Example of genomic structure
+
+The PD-T7-3 system is composed of one protein: PD-T7-3.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T7-3 system in the genome of *Alistipes sp.* (GCF_009557455.1) is composed of 1 protein: PD-T7-3 (WP_153498146.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T7-3 system is present in a total of 127 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 215 genomes (0.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T7-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T7-3 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6, T5, SECphi17, T3, T7 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t7-4.md b/content/2.defense-systems/pd-t7-4.md
new file mode 100644
index 0000000000000000000000000000000000000000..6f9e4da3171a08956bbdf1c08f06426977a45a30
--- /dev/null
+++ b/content/2.defense-systems/pd-t7-4.md
@@ -0,0 +1,39 @@
+---
+title: PD-T7-4
+---
+
+## Example of genomic structure
+
+The PD-T7-4 system is composed of one protein: PD-T7-4.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T7-4 system in the genome of *Parashewanella tropica* (GCF_004358445.1) is composed of 1 protein: PD-T7-4 (WP_133406898.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T7-4 system is present in a total of 204 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 501 genomes (2.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T7-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T7-4 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against SECphi18, SECphi27, T3, T7 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pd-t7-5.md b/content/2.defense-systems/pd-t7-5.md
new file mode 100644
index 0000000000000000000000000000000000000000..376998c0f8de5c042ddb5935abf5dad73259174b
--- /dev/null
+++ b/content/2.defense-systems/pd-t7-5.md
@@ -0,0 +1,39 @@
+---
+title: PD-T7-5
+---
+
+## Example of genomic structure
+
+The PD-T7-5 system is composed of one protein: PD-T7-5.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PD-T7-5 system in the genome of *Bacillus cereus* (GCF_001941885.1) is composed of 1 protein: PD-T7-5 (WP_075395673.1).
+
+## Distribution of the system among prokaryotes
+
+The PD-T7-5 system is present in a total of 128 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 363 genomes (1.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PD-T7-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PD-T7-5 systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against SECphi17, T3, T7 (Vassallo et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41564-022-01219-4
+
+---
+::
diff --git a/content/2.defense-systems/pfiat.md b/content/2.defense-systems/pfiat.md
new file mode 100644
index 0000000000000000000000000000000000000000..9968f6e4095a5dc0c81ae66b373adbb1b61fd0e7
--- /dev/null
+++ b/content/2.defense-systems/pfiat.md
@@ -0,0 +1,33 @@
+---
+title: PfiAT
+---
+
+## Example of genomic structure
+
+The PfiAT system is composed of 2 proteins: PfiA and, PfiT.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PfiAT system in the genome of *Pseudomonas amygdali* (GCF_023207855.1) is composed of 2 proteins: PfiT (WP_096134620.1)and, PfiA (WP_057431469.1).
+
+## Distribution of the system among prokaryotes
+
+The PfiAT system is present in a total of 261 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 819 genomes (3.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PfiAT system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1111/1751-7915.13570
+
+---
+::
diff --git a/content/2.defense-systems/pif.md b/content/2.defense-systems/pif.md
new file mode 100644
index 0000000000000000000000000000000000000000..81f9d1e6a0d0256d3d08b3a4d36a00171a23507c
--- /dev/null
+++ b/content/2.defense-systems/pif.md
@@ -0,0 +1,41 @@
+---
+title: Pif
+---
+
+## Example of genomic structure
+
+The Pif system is composed of 2 proteins: PifC and, PifA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Pif system in the genome of *Escherichia coli* (GCF_018628815.1) is composed of 2 proteins: PifA (WP_000698737.1)and, PifC (WP_000952217.1).
+
+## Distribution of the system among prokaryotes
+
+The Pif system is present in a total of 28 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 143 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Pif system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Pif systems were experimentally validated using:
+
+A system from *Escherichia coli F-plasmid* in *Escherichia coli* has an anti-phage effect against T7 (Cheng et al., 2004)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1007/BF00327934
+ - 10.1016/j.virol.2004.06.001
+ - 10.1128/jb.173.20.6507-6514.1991
+
+---
+::
diff --git a/content/2.defense-systems/prrc.md b/content/2.defense-systems/prrc.md
new file mode 100644
index 0000000000000000000000000000000000000000..83846dcfd88e3403af4fbf620a5f3b2de0552f50
--- /dev/null
+++ b/content/2.defense-systems/prrc.md
@@ -0,0 +1,40 @@
+---
+title: PrrC
+---
+
+## Example of genomic structure
+
+The PrrC system is composed of 4 proteins: EcoprrI, Type_I_S, PrrC and, Type_I_REases.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PrrC system in the genome of *Streptococcus canis* (GCF_900636575.1) is composed of 4 proteins: Type_I_REases (WP_003046543.1), PrrC (WP_003046540.1), Type_I_S (WP_129544911.1)and, Type_I_MTases (WP_003046534.1).
+
+## Distribution of the system among prokaryotes
+
+The PrrC system is present in a total of 285 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 705 genomes (3.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PrrC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PrrC systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against Lambda, T4 Dec8 (Jabbar and Snyder, 1984)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1006/jmbi.1995.0343
+ - 10.1186/1743-422X-7-360
+
+---
+::
diff --git a/content/2.defense-systems/psyrta.md b/content/2.defense-systems/psyrta.md
new file mode 100644
index 0000000000000000000000000000000000000000..1d8a642917c90957f559ace5c1e08fa551d346e4
--- /dev/null
+++ b/content/2.defense-systems/psyrta.md
@@ -0,0 +1,40 @@
+---
+title: PsyrTA
+---
+
+## Example of genomic structure
+
+The PsyrTA system is composed of 2 proteins: PsyrT and, PsyrA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+PsyrTA system in the genome of *Photorhabdus laumondii* (GCF_003343225.1) is composed of 2 proteins: PsyrT (WP_109791883.1)and, PsyrA (WP_113049635.1).
+
+## Distribution of the system among prokaryotes
+
+The PsyrTA system is present in a total of 281 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1435 genomes (6.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the PsyrTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+PsyrTA systems were experimentally validated using:
+
+A system from *Bacillus sp. FJAT-29814* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+ - 10.1016/j.molcel.2013.02.002
+
+---
+::
diff --git a/content/2.defense-systems/pycsar.md b/content/2.defense-systems/pycsar.md
new file mode 100644
index 0000000000000000000000000000000000000000..29f61ad8cd082c1bd31d1b4f01a73e47a96ada56
--- /dev/null
+++ b/content/2.defense-systems/pycsar.md
@@ -0,0 +1,41 @@
+---
+title: Pycsar
+---
+
+## Example of genomic structure
+
+The Pycsar system is composed of 2 proteins: AG_cyclase and, Effector_TIR.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Pycsar system in the genome of *Staphylococcus aureus* (GCF_003186105.1) is composed of 2 proteins: AG_cyclase (WP_065316016.1)and, 2TM_5 (WP_000073144.1).
+
+## Distribution of the system among prokaryotes
+
+The Pycsar system is present in a total of 276 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 559 genomes (2.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Pycsar system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Pycsar systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5, P1, LambdaVir, SECphi27 (Tal et al., 2021)
+
+A system from *Xanthomonas perforans* in *Escherichia coli* has an anti-phage effect against T7 (Tal et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.cell.2021.09.031
+
+---
+::
diff --git a/content/2.defense-systems/radar.md b/content/2.defense-systems/radar.md
new file mode 100644
index 0000000000000000000000000000000000000000..49a4645c8db8f2cb26010b47c7c2229c77be37fd
--- /dev/null
+++ b/content/2.defense-systems/radar.md
@@ -0,0 +1,61 @@
+---
+title: RADAR
+---
+
+## Description
+
+RADAR is comprised of two genes, encoding respectively for an adenosine triphosphatase (RdrA) and  a divergent adenosine deaminase (RdrB) (1), which are in some cases associated with a small membrane protein (RdrC or D) (1).Â
+
+RADAR was found to perform RNA editing of adenosine to inosine during phage infection. Editing sites are broadly distributed on the host transcriptome, which could prove deleterious to the host and explain the observed growth arrest of RADAR upon phage infection. Â
+
+## Molecular mechanism
+RADAR mediates growth arrest upon infection and is therefore considered to be an Abortive infection system.
+
+## Example of genomic structure
+
+The RADAR system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+radar_I subsystem in the genome of *Dickeya dianthicola* (GCF_014893095.1) is composed of 2 proteins: rdrB_I (WP_192988590.1)and, rdrA_I (WP_192988591.1).
+
+{max-width=750px}
+
+radar_II subsystem in the genome of *Klebsiella aerogenes* (GCF_008693885.1) is composed of 3 proteins: rdrD_II (WP_015705078.1), rdrB_II (WP_015705077.1)and, rdrA_II (WP_015705076.1).
+
+## Distribution of the system among prokaryotes
+
+The RADAR system is present in a total of 39 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 135 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the RADAR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+RADAR systems were experimentally validated using:
+
+A system from *Citrobacter rodentium* in *Escherichia coli* has an anti-phage effect against T2, T4, T5, T3, T6 (Gao et al., 2020; Duncan-Lowey et al., 2022)
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Duncan-Lowey et al., 2022)
+
+A system from *Streptococcus suis* in *Escherichia coli* has an anti-phage effect against T2, T4, T5, T6 (Duncan-Lowey et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aba0372
+
+---
+::
+
+
+## References
+
+1. Gao L, Altae-Tran H, Böhning F, et al. Diverse enzymatic activities mediate antiviral immunity in prokaryotes. *Science*. 2020;369(6507):1077-1084. doi:10.1126/science.aba0372
diff --git a/content/2.defense-systems/retron.md b/content/2.defense-systems/retron.md
new file mode 100644
index 0000000000000000000000000000000000000000..e53f9f4fc899736379f9d4666c35ec29fd80ab7d
--- /dev/null
+++ b/content/2.defense-systems/retron.md
@@ -0,0 +1,142 @@
+---
+title: Retron
+---
+
+## Description
+
+Retrons are genetic elements constituted of a non-coding RNA (ncRNA) associated with a reverse-transcriptase (RT). The RT reverse-transcribes part of the ncRNA to generate an RNA-DNA hybrid molecule. Although the existence of retrons have been known for decades, their biological functions were unknown. Recent studies revealed that most retrons could in fact be anti-phage systems (1,2).Â
+
+
+
+_Fig 1. (Mestre et al., 2020) Structure and organisation of a retron_ . The two non-coding contiguous inverted sequences (named msr and msd) are transcribed as a single RNA. The RT recognizes its specific structure and reverse-transcribes it, generating an RNA-DNA hybrid
+
+
+The majority of retrons are encoded on a gene cassette that encodes the retron and one or two additional proteins, which act as the retrons effectors. Bioinformatic prediction reveals that these effectors are very diverse and include transmembrane proteins, proteases, Cold-shock proteins, TIR domains proteins, ATPase, endonucleases, etc. Interestingly, several of these effector domains have already been described in other defense systems, including CBASS and Septu. Most retrons appear to act through an Abortive infection strategy (1).
+
+## Molecular mechanisms
+
+The *E.coli* retron system Ec48 mediates growth arrest upon sensing the inactivation of the bacterial RecBCD complex, a key element of the bacterial DNA repair system and immunity (1). Another study demonstrates that several retrons are part of Toxin-Antitoxin systems, where the RT-msDNA complex acts as an antitoxin that binds to and inhibits its cognate toxin. The tempering of the RT-msDNA, possibly by phage-encoded anti-RM systems, abolishes the antitoxin properties of the retron element, resulting in cell death mediated by the toxin activity (2).Â
+
+
+## Example of genomic structure
+
+The Retron system have been describe in a total of 16 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Retron_II subsystem in the genome of *Klebsiella pneumoniae* (GCF_904866255.1) is composed of 2 proteins: NDT2 (WP_057222224.1)and, RT_Tot (WP_048289034.1).
+
+{max-width=750px}
+
+Retron_IV subsystem in the genome of *Aliivibrio fischeri* (GCF_000011805.1) is composed of 2 proteins: RT_Tot (WP_011261677.1)and, 2TM (WP_236727775.1).
+
+{max-width=750px}
+
+Retron_I_A subsystem in the genome of *Vibrio harveyi* (GCF_009184745.1) is composed of 3 proteins: RT_Tot (WP_152163686.1), ATPase_TypeIA (WP_152163687.1)and, HNH_TIGR02646 (WP_152163688.1).
+
+{max-width=750px}
+
+Retron_I_B subsystem in the genome of *Vibrio vulnificus* (GCF_009665475.1) is composed of 2 proteins: ATPase_TOPRIM_COG3593 (WP_103277404.1)and, RT_Tot (WP_043877188.1).
+
+{max-width=750px}
+
+Retron_I_C subsystem in the genome of *Listeria monocytogenes* (GCF_905219385.1) is composed of 1 protein: RT_1_C2 (WP_003726410.1).
+
+{max-width=750px}
+
+Retron_V subsystem in the genome of *Proteus terrae* (GCF_013171285.1) is composed of 2 proteins: CSD (WP_004244726.1)and, RT_Tot (WP_109418979.1).
+
+{max-width=750px}
+
+Retron_VI subsystem in the genome of *Pseudomonas eucalypticola* (GCF_013374995.1) is composed of 2 proteins: HTH (WP_245217789.1)and, RT_Tot (WP_176571652.1).
+
+{max-width=750px}
+
+Retron_VII_1 subsystem in the genome of *Pseudoxanthomonas mexicana* (GCF_014397415.1) is composed of 1 protein: RT_7_A1 (WP_187572543.1).
+
+{max-width=750px}
+
+Retron_VII_2 subsystem in the genome of *Bacillus mycoides* (GCF_018742105.1) is composed of 2 proteins: DUF3800 (WP_215564565.1)and, RT_Tot (WP_215564572.1).
+
+{max-width=750px}
+
+Retron_XI subsystem in the genome of *Planococcus kocurii* (GCF_001465835.2) is composed of 1 protein: RT_11 (WP_058386256.1).
+
+{max-width=750px}
+
+Retron_XII subsystem in the genome of *Stenotrophomonas acidaminiphila* (GCF_014109845.1) is composed of 1 protein: RT_12 (WP_182333825.1).
+
+{max-width=750px}
+
+Retron_XIII subsystem in the genome of *Delftia acidovorans* (GCF_016026535.1) is composed of 3 proteins: ARM (WP_197944577.1), WHSWIM (WP_197944578.1)and, RT_Tot (WP_065344905.1).
+
+## Distribution of the system among prokaryotes
+
+The Retron system is present in a total of 731 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2601 genomes (11.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Retron system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Retron systems were experimentally validated using:
+
+Subsystem SLATT + RT_G2_intron with a system from *Klebsiella pneumoniae's PICI (KpCIUCICRE 8)* in *Escherichia coli* has an anti-phage effect against T5, HK97, HK544, HK578, T7 (Fillol-Salom et al., 2022)
+
+Subsystem SLATT + RT_G2_intron with a system from *Klebsiella pneumoniae's PICI (KpCIUCICRE 8)* in *Samonella enterica* has an anti-phage effect against P22, BTP1, ES18 (Fillol-Salom et al., 2022)
+
+Subsystem SLATT + RT_G2_intron with a system from *Klebsiella pneumoniae's PICI (KpCIUCICRE 8)* in *Klebsiella pneumoniae* has an anti-phage effect against Pokey, Raw, Eggy, KaID (Fillol-Salom et al., 2022)
+
+Subsystem RT Ec67 + TOPRIM with a system from *Klebsiella pneumoniae's PICI (KpCIB28906)* in *Escherichia coli* has an anti-phage effect against T4, T5, HK578, T7 (Fillol-Salom et al., 2022)
+
+Subsystem RT Ec67 + TOPRIM with a system from *Klebsiella pneumoniae's PICI (KpCIB28906)* in *Samonella enterica* has an anti-phage effect against det7 (Fillol-Salom et al., 2022)
+
+Subsystem RT Ec67 + TOPRIM with a system from *Klebsiella pneumoniae's PICI (KpCIB28906)* in *Samonella enterica* has an anti-phage effect against Pokey, KalD (Fillol-Salom et al., 2022)
+
+Subsystem Retron-TIR with a system from *Shigella dysenteriae* in *Escherichia coli* has an anti-phage effect against T2, T4, T3, T7, PhiV-1 (Gao et al., 2020)
+
+Subsystem Retron Ec67 + TOPRIM with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T5 (Gao et al., 2020)
+
+Subsystem Retron Ec86 + Nuc_deoxy with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4 (Gao et al., 2020)
+
+Subsystem Retron Ec78 + ATPase + HNH with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5 (Gao et al., 2020)
+
+Subsystem Ec73 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against SECphi4, SECphi6, SECphi27, P1, T7 (Millman et al., 2020)
+
+Subsystem Ec86 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5 (Millman et al., 2020)
+
+Subsystem Ec48 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against Lambda-Vir, T5, T2, T4, T7 (Millman et al., 2020)
+
+Subsystem Ec67 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5 (Millman et al., 2020)
+
+Subsystem Se72 with a system from *Salmonella enterica* in *Escherichia coli* has an anti-phage effect against Lambda-Vir (Millman et al., 2020)
+
+Subsystem Ec78 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5 (Millman et al., 2020)
+
+Subsystem Ec83 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Millman et al., 2020)
+
+Subsystem Vc95 with a system from *Vibrio cholerae* in *Escherichia coli* has an anti-phage effect against T2, T4, T6 (Millman et al., 2020)
+
+Subsystem Retron-Eco8 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against SECphi4, SECphi6, SECphi18, T4, T6, T7 (Millman et al., 2020)
+
+Subsystem Retron-Sen2 with a system from *Salmonella enterica serovar Typhimurium* in *Escherichia coli* has an anti-phage effect against T5 (Bobonis et al., 2022)
+
+Subsystem Retron-Eco9 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1vir, T2, T3, T5, T7, Ffm, Br60 (Bobonis et al., 2022)
+
+Subsystem Retron-Eco1 with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5 (Bobonis et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.cell.2020.09.065
+ - 10.1093/nar/gkaa1149
+
+---
+::
diff --git a/content/2.defense-systems/rexab.md b/content/2.defense-systems/rexab.md
new file mode 100644
index 0000000000000000000000000000000000000000..5108628d3770407a2ff9beda0d4aae46f4c35fb6
--- /dev/null
+++ b/content/2.defense-systems/rexab.md
@@ -0,0 +1,39 @@
+---
+title: RexAB
+---
+
+## Example of genomic structure
+
+The RexAB system is composed of 2 proteins: RexA and, RexB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+RexAB system in the genome of *Escherichia coli* (GCF_008033315.1) is composed of 2 proteins: RexA (WP_000788349.1)and, RexB (WP_001245922.1).
+
+## Distribution of the system among prokaryotes
+
+The RexAB system is present in a total of 17 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 73 genomes (0.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the RexAB system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+RexAB systems were experimentally validated using:
+
+A system from *Escherichia coli lambda prophage* in *Escherichia coli* has an anti-phage effect against T4, Lamboid phages (Parma et al., 1992)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1101/gad.6.3.497
+
+---
+::
diff --git a/content/2.defense-systems/rloc.md b/content/2.defense-systems/rloc.md
new file mode 100644
index 0000000000000000000000000000000000000000..2f548f126e443200ee89b9c1a7aabfa0ddcd9944
--- /dev/null
+++ b/content/2.defense-systems/rloc.md
@@ -0,0 +1,40 @@
+---
+title: RloC
+---
+
+## Example of genomic structure
+
+The RloC system is composed of one protein: RloC.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+RloC system in the genome of *Flavobacterium arcticum* (GCF_003344925.1) is composed of 1 protein: RloC (WP_114676820.1).
+
+## Distribution of the system among prokaryotes
+
+The RloC system is present in a total of 803 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1961 genomes (8.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the RloC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+RloC systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4 (Penner et al., 1995)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1111/j.1365-2958.2008.06387.x
+ - 10.1111/mmi.13074
+
+---
+::
diff --git a/content/2.defense-systems/rm.md b/content/2.defense-systems/rm.md
index 98337030a22fa6307283fb37d3e9f19a6ae9926d..9e7048f37d72658acc1d60a4d78f2fe78e479948 100644
--- a/content/2.defense-systems/rm.md
+++ b/content/2.defense-systems/rm.md
@@ -1,4 +1,6 @@
-# RM
+---
+title: RM
+---
## Example of genomic structure
@@ -6,25 +8,25 @@ The RM system have been describe in a total of 5 subsystems.
Here is some example found in the RefSeq database:
-<img src="./data/RM_Type_I.svg">
+{max-width=750px}
-RM\_Type\_I subsystem in the genome of *Aeromonas veronii* (GCF\_014169835.1) is composed of 4 proteins: Type\_I\_MTases (WP\_182963881.1), Type\_I\_MTases (WP\_182963881.1), Type\_I\_S (WP\_182963883.1)and, Type\_I\_REases (WP\_182963884.1).
+RM_Type_I subsystem in the genome of *Aeromonas veronii* (GCF_014169835.1) is composed of 4 proteins: Type_I_MTases (WP_182963881.1), Type_I_MTases (WP_182963881.1), Type_I_S (WP_182963883.1)and, Type_I_REases (WP_182963884.1).
-<img src="./data/RM_Type_II.svg">
+{max-width=750px}
-RM\_Type\_II subsystem in the genome of *Mannheimia haemolytica* (GCF\_007965905.1) is composed of 2 proteins: Type\_II\_MTases (WP\_006248352.1)and, Type\_II\_REases (WP\_006253295.1).
+RM_Type_II subsystem in the genome of *Mannheimia haemolytica* (GCF_007965905.1) is composed of 2 proteins: Type_II_MTases (WP_006248352.1)and, Type_II_REases (WP_006253295.1).
-<img src="./data/RM_Type_IIG.svg">
+{max-width=750px}
-RM\_Type\_IIG subsystem in the genome of *Spirochaeta africana* (GCF\_000242595.2) is composed of 1 protein: Type\_IIG (WP\_014455422.1).
+RM_Type_IIG subsystem in the genome of *Spirochaeta africana* (GCF_000242595.2) is composed of 1 protein: Type_IIG (WP_014455422.1).
-<img src="./data/RM_Type_III.svg">
+{max-width=750px}
-RM\_Type\_III subsystem in the genome of *Pannonibacter phragmitetus* (GCF\_001484065.1) is composed of 2 proteins: Type\_III\_MTases (WP\_058898889.1)and, Type\_III\_REases (WP\_058898890.1).
+RM_Type_III subsystem in the genome of *Pannonibacter phragmitetus* (GCF_001484065.1) is composed of 2 proteins: Type_III_MTases (WP_058898889.1)and, Type_III_REases (WP_058898890.1).
-<img src="./data/RM_Type_IV.svg">
+{max-width=750px}
-RM\_Type\_IV subsystem in the genome of *Clostridioides difficile* (GCF\_018884605.1) is composed of 1 protein: Type\_IV\_REases (WP\_021364579.1).
+RM_Type_IV subsystem in the genome of *Clostridioides difficile* (GCF_018884605.1) is composed of 1 protein: Type_IV_REases (WP_021364579.1).
## Distribution of the system among prokaryotes
@@ -32,12 +34,16 @@ The RM system is present in a total of 4699 different species.
Among the 22k complete genomes of RefSeq, this system is present in 19087 genomes (83.7 %).
-<img src="./data/Distribution_RM.svg" width=800px>
+{max-width=750px}
-*Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+*Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
## Relevant abstracts
-**Oliveira, P. H., Touchon, M. & Rocha, E. P. C. The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts. Nucleic Acids Res 42, 10618-10631 (2014).**
-The roles of restriction-modification (R-M) systems in providing immunity against horizontal gene transfer (HGT) and in stabilizing mobile genetic elements (MGEs) have been much debated. However, few studies have precisely addressed the distribution of these systems in light of HGT, its mechanisms and its vectors. We analyzed the distribution of R-M systems in 2261 prokaryote genomes and found their frequency to be strongly dependent on the presence of MGEs, CRISPR-Cas systems, integrons and natural transformation. Yet R-M systems are rare in plasmids, in prophages and nearly absent from other phages. Their abundance depends on genome size for small genomes where it relates with HGT but saturates at two occurrences per genome. Chromosomal R-M systems might evolve under cycles of purifying and relaxed selection, where sequence conservation depends on the biochemical activity and complexity of the system and total gene loss is frequent. Surprisingly, analysis of 43 pan-genomes suggests that solitary R-M genes rarely arise from the degradation of R-M systems. Solitary genes are transferred by large MGEs, whereas complete systems are more frequently transferred autonomously or in small MGEs. Our results suggest means of testing the roles for R-M systems and their associations with MGEs.
+::article-doi-list
+---
+items:
+ - 10.1093/nar/gku734
+---
+::
diff --git a/content/2.defense-systems/rnlab.md b/content/2.defense-systems/rnlab.md
new file mode 100644
index 0000000000000000000000000000000000000000..81b1932f4521ba93782c532eb5806d21f1b7dcdb
--- /dev/null
+++ b/content/2.defense-systems/rnlab.md
@@ -0,0 +1,39 @@
+---
+title: RnlAB
+---
+
+## Example of genomic structure
+
+The RnlAB system is composed of 2 proteins: RnlA and, RnlB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+RnlAB system in the genome of *Escherichia coli* (GCF_014338505.1) is composed of 2 proteins: RnlA (WP_000155570.1)and, RnlB (WP_000461704.1).
+
+## Distribution of the system among prokaryotes
+
+The RnlAB system is present in a total of 71 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 284 genomes (1.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the RnlAB system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+RnlAB systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4 (Koga et al., 2011)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1534/genetics.110.121798
+
+---
+::
diff --git a/content/2.defense-systems/rosmerta.md b/content/2.defense-systems/rosmerta.md
new file mode 100644
index 0000000000000000000000000000000000000000..1b0be240f44d959884782c8f383f80afffb934e3
--- /dev/null
+++ b/content/2.defense-systems/rosmerta.md
@@ -0,0 +1,39 @@
+---
+title: RosmerTA
+---
+
+## Example of genomic structure
+
+The RosmerTA system is composed of 2 proteins: RmrA_2634932349 and, RmrT_2634932349.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+RosmerTA system in the genome of *Acinetobacter indicus* (GCF_002953575.2) is composed of 2 proteins: RmrT_2641389401 (WP_045796188.1)and, RmrA_2641389401 (WP_045796189.1).
+
+## Distribution of the system among prokaryotes
+
+The RosmerTA system is present in a total of 540 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2124 genomes (9.3 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the RosmerTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+RosmerTA systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against P1, LambdaVir (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/rst_2tm_1tm_tir.md b/content/2.defense-systems/rst_2tm_1tm_tir.md
new file mode 100644
index 0000000000000000000000000000000000000000..2be6806ad7f1b91892422d2ffd51d5f708737c4d
--- /dev/null
+++ b/content/2.defense-systems/rst_2tm_1tm_tir.md
@@ -0,0 +1,33 @@
+---
+title: Rst_2TM_1TM_TIR
+---
+
+## Example of genomic structure
+
+The Rst_2TM_1TM_TIR system is composed of 3 proteins: Rst_TIR_tm, Rst_1TM_TIR and, Rst_2TM_TIR.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_2TM_1TM_TIR system in the genome of *Escherichia coli* (GCF_001900375.1) is composed of 3 proteins: Rst_TIR_tm (WP_023140578.1), Rst_1TM_TIR (WP_001534953.1)and, Rst_2TM_TIR (WP_023140577.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_2TM_1TM_TIR system is present in a total of 1 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2 genomes (0.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_3hp.md b/content/2.defense-systems/rst_3hp.md
new file mode 100644
index 0000000000000000000000000000000000000000..404fd300e242b8465639033fe66b77582ad3b220
--- /dev/null
+++ b/content/2.defense-systems/rst_3hp.md
@@ -0,0 +1,39 @@
+---
+title: Rst_3HP
+---
+
+## Example of genomic structure
+
+The Rst_3HP system is composed of 3 proteins: Hp1, Hp2 and, Hp3.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_3HP system in the genome of *Klebsiella pneumoniae* (GCF_016403065.1) is composed of 3 proteins: Hp3 (WP_004151009.1), Hp2 (WP_004151008.1)and, Hp1 (WP_004151007.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_3HP system is present in a total of 83 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 420 genomes (1.8 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_3HP system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Rst_3HP systems were experimentally validated using:
+
+A system from *Escherichia coli (P2 loci)* in *Escherichia coli* has an anti-phage effect against P1 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_duf4238.md b/content/2.defense-systems/rst_duf4238.md
new file mode 100644
index 0000000000000000000000000000000000000000..be8653a6c35c29d016bcb4380b81ee40ae81e4f6
--- /dev/null
+++ b/content/2.defense-systems/rst_duf4238.md
@@ -0,0 +1,39 @@
+---
+title: Rst_DUF4238
+---
+
+## Example of genomic structure
+
+The Rst_DUF4238 system is composed of one protein: DUF4238_Pers.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_DUF4238 system in the genome of *Enterobacter kobei* (GCF_008365235.1) is composed of 1 protein: DUF4238_Pers (WP_058689834.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_DUF4238 system is present in a total of 34 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 46 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_DUF4238 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Rst_DUF4238 systems were experimentally validated using:
+
+A system from *Escherichia coli (P2 loci)* in *Escherichia coli* has an anti-phage effect against T7 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_gop_beta_cll.md b/content/2.defense-systems/rst_gop_beta_cll.md
new file mode 100644
index 0000000000000000000000000000000000000000..932d467812dae394ab47d3399a07600999c2836a
--- /dev/null
+++ b/content/2.defense-systems/rst_gop_beta_cll.md
@@ -0,0 +1,39 @@
+---
+title: Rst_gop_beta_cll
+---
+
+## Example of genomic structure
+
+The Rst_gop_beta_cll system is composed of 3 proteins: gop, beta and, cll.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_gop_beta_cll system in the genome of *Escherichia coli* (GCF_003018615.1) is composed of 3 proteins: cll (WP_001357997.1), beta (WP_001357996.1)and, gop (WP_000931915.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_gop_beta_cll system is present in a total of 14 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 37 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_gop_beta_cll system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Rst_gop_beta_cll systems were experimentally validated using:
+
+A system from *Enterobacteria phage P4* in *Escherichia coli* has an anti-phage effect against Lambda, P1 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_helicaseduf2290.md b/content/2.defense-systems/rst_helicaseduf2290.md
new file mode 100644
index 0000000000000000000000000000000000000000..4221da9a6400e79454906a9392425c60273bf983
--- /dev/null
+++ b/content/2.defense-systems/rst_helicaseduf2290.md
@@ -0,0 +1,39 @@
+---
+title: Rst_HelicaseDUF2290
+---
+
+## Example of genomic structure
+
+The Rst_HelicaseDUF2290 system is composed of 2 proteins: Helicase and, DUF2290.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_HelicaseDUF2290 system in the genome of *Xylella fastidiosa* (GCF_021459885.1) is composed of 2 proteins: Helicase (WP_012338122.1)and, DUF2290 (WP_004084731.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_HelicaseDUF2290 system is present in a total of 124 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 211 genomes (0.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_HelicaseDUF2290 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Rst_HelicaseDUF2290 systems were experimentally validated using:
+
+A system from *Klebsiella pneumoniae (P4 loci)* in *Escherichia coli* has an anti-phage effect against T7 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_hydrolase-3tm.md b/content/2.defense-systems/rst_hydrolase-3tm.md
new file mode 100644
index 0000000000000000000000000000000000000000..afa9c3528c869f45fe39936f3e7e0f55d4527b9f
--- /dev/null
+++ b/content/2.defense-systems/rst_hydrolase-3tm.md
@@ -0,0 +1,39 @@
+---
+title: Rst_Hydrolase-3Tm
+---
+
+## Example of genomic structure
+
+The Rst_Hydrolase-3Tm system is composed of 2 proteins: Hydrolase and, Hydrolase-Tm.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_Hydrolase-Tm subsystem in the genome of *Escherichia coli* (GCF_004792495.1) is composed of 2 proteins: Hydrolase-Tm (WP_000998640.1)and, Hydrolase (WP_000754434.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_Hydrolase-3Tm system is present in a total of 34 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 42 genomes (0.2 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_Hydrolase-3Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Rst_Hydrolase-3Tm systems were experimentally validated using:
+
+A system from *Escherichia coli (P4 loci)* in *Escherichia coli* has an anti-phage effect against T7 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_paris.md b/content/2.defense-systems/rst_paris.md
new file mode 100644
index 0000000000000000000000000000000000000000..8422d20773d25e2a55a98d08082b6403717676f9
--- /dev/null
+++ b/content/2.defense-systems/rst_paris.md
@@ -0,0 +1,59 @@
+---
+title: Rst_PARIS
+---
+
+## Description
+
+PARIS (for Phage Anti-Restriction-Induced System) is a novel anti-phage system. PARIS is found in 4% of prokaryotic genomes. It comprises an ATPase associated with a DUF4435 protein, which can be found either as a two-gene cassette or a single-gene fusion (1).
+
+This system relies on an unknown [Abortive infection](/general_concepts/Abi) mechanism to trigger growth arrest upon sensing a phage-encoded protein (Ocr). Interestingly, the Ocr protein has been found to inhibit R-M systems and BREX systems, making PARIS a suitable defense mechanism against RM resistant and/or BREX resistant phages (1, 2, 3).Â
+
+## Example of genomic structure
+
+The Rst_PARIS system have been describe in a total of 4 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+PARIS_I subsystem in the genome of *Salmonella enterica* (GCF_020715485.1) is composed of 2 proteins: AAA_15 (WP_001520831.1)and, DUF4435 (WP_010989064.1).
+
+{max-width=750px}
+
+PARIS_II subsystem in the genome of *Enterobacter cloacae* (GCF_023238665.1) is composed of 2 proteins: DUF4435 (WP_071830092.1)and, AAA_21 (WP_061772587.1).
+
+{max-width=750px}
+
+PARIS_II_merge subsystem in the genome of *Desulfovibrio desulfuricans* (GCF_017815575.1) is composed of 1 protein: AAA_21_DUF4435 (WP_209818471.1).
+
+{max-width=750px}
+
+PARIS_I_merge subsystem in the genome of *Sideroxydans lithotrophicus* (GCF_000025705.1) is composed of 1 protein: AAA_15_DUF4435 (WP_013030315.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_PARIS system is present in a total of 463 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1145 genomes (5.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_PARIS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Rst_PARIS systems were experimentally validated using:
+
+Subsystem Paris 1 with a system from *Escherichia coli (P4 loci)* in *Escherichia coli* has an anti-phage effect against Lambda, T4, CLB_P2, LF82_P8, Al505_P2, T7 (Rousset et al., 2022)
+
+Subsystem Paris 2 with a system from *Escherichia coli (P4 loci)* in *Escherichia coli* has an anti-phage effect against Lambda, T4, CLB_P2, LF82_P8, T7 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_rt-nitrilase-tm.md b/content/2.defense-systems/rst_rt-nitrilase-tm.md
new file mode 100644
index 0000000000000000000000000000000000000000..b27dcfc97108b4703f9926a769a47f8d2f3bac73
--- /dev/null
+++ b/content/2.defense-systems/rst_rt-nitrilase-tm.md
@@ -0,0 +1,39 @@
+---
+title: Rst_RT-nitrilase-Tm
+---
+
+## Example of genomic structure
+
+The Rst_RT-nitrilase-Tm system is composed of 2 proteins: RT-Tm and, RT.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_RT-Tm subsystem in the genome of *Morganella morganii* (GCF_900478755.1) is composed of 2 proteins: RT (WP_061057569.1)and, RT-Tm (WP_004234654.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_RT-nitrilase-Tm system is present in a total of 5 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 25 genomes (0.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_RT-nitrilase-Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Rst_RT-nitrilase-Tm systems were experimentally validated using:
+
+A system from *Escherichia coli (P4 loci)* in *Escherichia coli* has an anti-phage effect against Al505_P2 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/rst_tir-nlr.md b/content/2.defense-systems/rst_tir-nlr.md
new file mode 100644
index 0000000000000000000000000000000000000000..7a9c01aa9766f1a8ac67d7b0600177193d4df2ba
--- /dev/null
+++ b/content/2.defense-systems/rst_tir-nlr.md
@@ -0,0 +1,39 @@
+---
+title: Rst_TIR-NLR
+---
+
+## Example of genomic structure
+
+The Rst_TIR-NLR system is composed of one protein: TIR.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Rst_TIR-NLR system in the genome of *Escherichia coli* (GCF_016903595.1) is composed of 1 protein: TIR (WP_059327187.1).
+
+## Distribution of the system among prokaryotes
+
+The Rst_TIR-NLR system is present in a total of 43 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 254 genomes (1.1 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Rst_TIR-NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Rst_TIR-NLR systems were experimentally validated using:
+
+A system from *Klebsiella pneumoniae (P4 loci)* in *Escherichia coli* has an anti-phage effect against T4, P1, CLB_P2, LF82_P8, AL505_P2, T7 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.02.018
+
+---
+::
diff --git a/content/2.defense-systems/sanata.md b/content/2.defense-systems/sanata.md
new file mode 100644
index 0000000000000000000000000000000000000000..0c1c6299d1f6374603d767e86fc6cc20bd85c7f9
--- /dev/null
+++ b/content/2.defense-systems/sanata.md
@@ -0,0 +1,39 @@
+---
+title: SanaTA
+---
+
+## Example of genomic structure
+
+The SanaTA system is composed of 2 proteins: SanaT and, SanaA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+SanaTA system in the genome of *Methylovorus glucosetrophus* (GCF_000023745.1) is composed of 2 proteins: SanaT (WP_015830669.1)and, SanaA (WP_015830670.1).
+
+## Distribution of the system among prokaryotes
+
+The SanaTA system is present in a total of 504 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1071 genomes (4.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the SanaTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+SanaTA systems were experimentally validated using:
+
+A system from *Shewanella sp. ANA-3* in *Escherichia coli* has an anti-phage effect against T7 (Sberro et al., 2013)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.molcel.2013.02.002
+
+---
+::
diff --git a/content/2.defense-systems/sefir.md b/content/2.defense-systems/sefir.md
new file mode 100644
index 0000000000000000000000000000000000000000..cb4d0835e85d7545671c71286a8614f489a56427
--- /dev/null
+++ b/content/2.defense-systems/sefir.md
@@ -0,0 +1,52 @@
+---
+title: SEFIR
+---
+
+## Description
+The SEFIR defense system is composed of a single bacterial SEFIR (bSEFIR)-domain protein. bSEFIR-domain genes were identified in bacterial genomes, were shown to be enriched in defense islands and the activity of the defense system was first experimentally validated in *Bacillus sp.* NIO-1130 against phage phi29 [1].
+
+Bacterial SEFIR domains were named after their eukaryotic homologs which were already known to be part of several eukayrotic immune proteins (e.g. SEFs and Interleukin-17 Receptors) [2].
+
+## Molecular mechanism
+SEFIR was shown to protect against phage infection through an abortive infection mechanism *via* NAD+ depletion. This is similar to what can be observed in other defense systems containing a TIR domain which shares homology with the SEFIR domain (in eukaryotes, both domains are part of the STIR super family) [1].
+
+## Example of genomic structure
+
+The SEFIR system is composed of one protein: bSEFIR.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+SEFIR system in the genome of *Lactiplantibacillus plantarum* (GCF_003020005.1) is composed of 1 protein: bSEFIR (WP_106904862.1).
+
+## Distribution of the system among prokaryotes
+
+The SEFIR system is present in a total of 226 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 377 genomes (1.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the SEFIR system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+SEFIR systems were experimentally validated using:
+
+A system from *Bacillus sp. NIO-1130* in *Bacillus subtilis* has an anti-phage effect against phi29 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
+
+
+## References
+[1] Millman, A. et al. An expanded arsenal of immune systems that protect bacteria from phages. Cell Host Microbe 30, 1556-1569.e5 (2022).
+[2] Novatchkova, M., Leibbrandt, A., Werzowa, J., Neubüser, A., & Eisenhaber, F. (2003). The STIR-domain superfamily in signal transduction, development and immunity. _Trends in biochemical sciences_, _28_(5), 226-229.
diff --git a/content/2.defense-systems/septu.md b/content/2.defense-systems/septu.md
new file mode 100644
index 0000000000000000000000000000000000000000..5706ef4768cb6ac2788e11334c389d4ff75ed228
--- /dev/null
+++ b/content/2.defense-systems/septu.md
@@ -0,0 +1,43 @@
+---
+title: Septu
+---
+
+## Example of genomic structure
+
+The Septu system is composed of 2 proteins: PtuA and, PtuB.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Septu system in the genome of *Arcobacter porcinus* (GCF_004299785.2) is composed of 2 proteins: PtuA (WP_066386194.1)and, PtuB_2 (WP_066386193.1).
+
+## Distribution of the system among prokaryotes
+
+The Septu system is present in a total of 911 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2193 genomes (9.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Septu system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Septu systems were experimentally validated using:
+
+A system from *Bacillus thuringiensis* in *Bacillus subtilis* has an anti-phage effect against SBSphiJ, SBSphiC (Doron et al., 2018)
+
+A system from *Bacillus weihenstephanensis* in *Bacillus subtilis* has an anti-phage effect against SBSphiC, SpBeta (Doron et al., 2018)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.cell.2020.09.065
+ - 10.1093/nar/gkab883
+ - 10.1126/science.aar4120
+
+---
+::
diff --git a/content/2.defense-systems/shango.md b/content/2.defense-systems/shango.md
new file mode 100644
index 0000000000000000000000000000000000000000..9d3bb40dea8055d7c6f31530ac8311041beeae24
--- /dev/null
+++ b/content/2.defense-systems/shango.md
@@ -0,0 +1,60 @@
+---
+title: Shango
+---
+
+
+## Description
+Shango is a three genes defense system which was discovered in parallel in two works in both *E.coli* and *P.aeruginosa* and was shown to have antiphage activity against the Lambda-phage in *E.coli* [1] and against diverse podo- and siphoviridae in *P.aeruginosa* [2].
+
+Shango is composed of (i) a TerB-like domain, (ii) an Helicase and (iii) an ATPase. The TerB domain was previously shown to be associated to the perisplasmic membrane of bacteria [3].
+
+## Molecular mechanism
+
+The exact mechanism of action of the Shango defense has not yet been characterized, but it was shown that the TerB domain and the catalytic activity of the ATPase and the Helicase are required to provide antiviral defense. The fact that TerB domains are known to be associated to the periplasmic membrane could indicate that Shango might be involved in membrane surveillance [1].
+
+
+## Example of genomic structure
+
+The Shango system is composed of 3 proteins: SngC, SngB and, SngA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Shango system in the genome of *Paenibacillus sp.* (GCF_022637315.1) is composed of 3 proteins: SngA (WP_241931534.1), SngB (WP_241931535.1)and, SngC (WP_241931536.1).
+
+## Distribution of the system among prokaryotes
+
+The Shango system is present in a total of 385 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 1112 genomes (4.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Shango system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Shango systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi18 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
+
+
+## References
+Shango was discovered in parallel by Adi Millman (Sorek group) and the team of J. Bondy-Denomy (UCSF).
+
+[1] Millman, A., Melamed, S., Leavitt, A., Doron, S., Bernheim, A., Hör, J., Garb, J., Bechon, N., Brandis, A., Lopatina, A., Ofir, G., Hochhauser, D., Stokar-Avihail, A., Tal, N., Sharir, S., Voichek, M., Erez, Z., Ferrer, J. L. M., Dar, D., … Sorek, R. (2022). An expanded arsenal of immune systems that protect bacteria from phages. _Cell Host & Microbe_, _30_(11), 1556-1569.e5. [https://doi.org/10.1016/j.chom.2022.09.017](https://doi.org/10.1016/j.chom.2022.09.017)
+
+[2] Johnson, Matthew, Laderman, Eric, Huiting, Erin, Zhang, Charles, Davidson, Alan, & Bondy-Denomy, Joseph. (2022). _Core Defense Hotspots within Pseudomonas aeruginosa are a consistent and rich source of anti-phage defense systems_. [https://doi.org/10.5281/ZENODO.7254690](https://doi.org/10.5281/ZENODO.7254690)
+
+[3] Alekhina, O., Valkovicova, L., & Turna, J. (2011). Study of membrane attachment and in vivo co-localization of TerB protein from uropathogenic Escherichia coli KL53. _General physiology and biophysics_, _30_(3), 286-292.
\ No newline at end of file
diff --git a/content/2.defense-systems/shedu.md b/content/2.defense-systems/shedu.md
new file mode 100644
index 0000000000000000000000000000000000000000..2fedf255915adc3cf6babcbe52b81f0b5cd82542
--- /dev/null
+++ b/content/2.defense-systems/shedu.md
@@ -0,0 +1,39 @@
+---
+title: Shedu
+---
+
+## Example of genomic structure
+
+The Shedu system is composed of one protein: SduA.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Shedu system in the genome of *Mycolicibacterium psychrotolerans* (GCF_010729305.1) is composed of 1 protein: SduA (WP_246228780.1).
+
+## Distribution of the system among prokaryotes
+
+The Shedu system is present in a total of 483 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 899 genomes (3.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Shedu system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Shedu systems were experimentally validated using:
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against phi105, rho14, SPP1, phi29 (Doron et al., 2018)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aar4120
+
+---
+::
diff --git a/content/2.defense-systems/shosta.md b/content/2.defense-systems/shosta.md
new file mode 100644
index 0000000000000000000000000000000000000000..cb953d0f08c588db1454385a4281ca2a529000e5
--- /dev/null
+++ b/content/2.defense-systems/shosta.md
@@ -0,0 +1,43 @@
+---
+title: ShosTA
+---
+
+## Example of genomic structure
+
+The ShosTA system is composed of 2 proteins: ShosA and, ShosT.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+ShosTA system in the genome of *Escherichia coli* (GCF_011404895.1) is composed of 2 proteins: ShosA (WP_001567470.1)and, ShosT (WP_001567471.1).
+
+## Distribution of the system among prokaryotes
+
+The ShosTA system is present in a total of 299 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 668 genomes (2.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the ShosTA system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+ShosTA systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi4, SECphi6, SECphi18, T7 (Millman et al., 2022)
+
+A system from *Escherichia coli (P2 loci)* in *Escherichia coli* has an anti-phage effect against Lambda, T7 (Rousset et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+ - 10.1016/j.chom.2022.09.017
+ - 10.1101/gr.133850.111
+
+---
+::
diff --git a/content/2.defense-systems/sofic.md b/content/2.defense-systems/sofic.md
new file mode 100644
index 0000000000000000000000000000000000000000..44a42d388bb906c45c51dcbf92f004f5a62c39c5
--- /dev/null
+++ b/content/2.defense-systems/sofic.md
@@ -0,0 +1,39 @@
+---
+title: SoFIC
+---
+
+## Example of genomic structure
+
+The SoFIC system is composed of one protein: SoFic.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+SoFic subsystem in the genome of *Fusobacterium nucleatum* (GCF_019552125.1) is composed of 1 protein: SoFic (WP_220308819.1).
+
+## Distribution of the system among prokaryotes
+
+The SoFIC system is present in a total of 1014 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2265 genomes (9.9 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the SoFIC system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+SoFIC systems were experimentally validated using:
+
+A system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T5 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/spbk.md b/content/2.defense-systems/spbk.md
new file mode 100644
index 0000000000000000000000000000000000000000..997540c7a1ddbc76740cdc54a1815c3e06b3cb07
--- /dev/null
+++ b/content/2.defense-systems/spbk.md
@@ -0,0 +1,39 @@
+---
+title: SpbK
+---
+
+## Example of genomic structure
+
+The SpbK system is composed of one protein: SpbK.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+SpbK system in the genome of *Clostridium beijerinckii* (GCF_900010805.1) is composed of 1 protein: SpbK (WP_077841417.1).
+
+## Distribution of the system among prokaryotes
+
+The SpbK system is present in a total of 88 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 219 genomes (1.0 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the SpbK system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+SpbK systems were experimentally validated using:
+
+A system from *Bacillus subtilis* in *Bacillus subtilis* has an anti-phage effect against SPbeta (Johnson et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1371/journal.pgen.1010065
+
+---
+::
diff --git a/content/2.defense-systems/sspbcde.md b/content/2.defense-systems/sspbcde.md
new file mode 100644
index 0000000000000000000000000000000000000000..9fa2782b76a2f77792fe4fec0a5d8c775dc9a843
--- /dev/null
+++ b/content/2.defense-systems/sspbcde.md
@@ -0,0 +1,46 @@
+---
+title: SspBCDE
+---
+
+## Example of genomic structure
+
+The SspBCDE system is composed of 7 proteins: SspB, SspC, SspD, SspE, SspH, SspG and, SspF.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+SspBCDE system in the genome of *Bordetella hinzii* (GCF_006770405.1) is composed of 7 proteins: SspF (WP_221886990.1), SspG (WP_142096192.1), SspH (WP_142096195.1), SspE (WP_142096198.1), SspD (WP_142096201.1), SspC (WP_142096204.1)and, SspB (WP_142096207.1).
+
+## Distribution of the system among prokaryotes
+
+The SspBCDE system is present in a total of 276 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 579 genomes (2.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the SspBCDE system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+SspBCDE systems were experimentally validated using:
+
+Subsystem SspABCD+SspE with a system from *Vibrio cyclitrophicus* in *Escherichia coli* has an anti-phage effect against T4, T1, JMPW1, JMPW2, EEP, T7 (Xiong et al., 2020)
+
+Subsystem SspBCD+SspE with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T4, T1, JMPW1, JMPW2, EEP, T7, PhiX174 (Xiong et al., 2020)
+
+Subsystem SspBCD+SspE with a system from *Streptomyces yokosukanensis* in *Streptomyces lividans* has an anti-phage effect against JXY1 (Xiong et al., 2020)
+
+Subsystem SspBCD+SspFGH with a system from *Vibrio anguillarum* in *Escherichia coli* has an anti-phage effect against T1, JMPW2, T4, EEP (Wang et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1128/mBio.00613-21
+ - 10.1128/mBio.00613-21
+
+---
+::
diff --git a/content/2.defense-systems/stk2.md b/content/2.defense-systems/stk2.md
new file mode 100644
index 0000000000000000000000000000000000000000..0ed290d74d7077d87b7202c87591b41063c2f093
--- /dev/null
+++ b/content/2.defense-systems/stk2.md
@@ -0,0 +1,50 @@
+---
+title: Stk2
+---
+
+## Description
+
+Eukaryotic-like serine/threonine kinases have a variety of functions in prokaryotes. Recently, a single-gene system (Stk2) encoding for a Serine/threonine kinase from Staphylococcus epidermidis has been found to have anti-phage activity both in its native host and in a heterologous S.aureus host (Depardieu et al., 2016).
+
+## Molecular mechanism
+
+Stk2 is an Abortive infection system, which triggers cell death upon phage infection, probably through phosphorylation of diverse essential cellular pathways (Depardieu et al., 2016). Stk2 was shown to detect a phage protein named Pack, which was proposed to be involved in phage genome packaging (Depardieu et al., 2016)
+
+
+## Example of genomic structure
+
+The Stk2 system is composed of one protein: Stk2.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Stk2 system in the genome of *Staphylococcus aureus* (GCF_009739755.1) is composed of 1 protein: Stk2 (WP_001001347.1).
+
+## Distribution of the system among prokaryotes
+
+The Stk2 system is present in a total of 29 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 141 genomes (0.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Stk2 system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Stk2 systems were experimentally validated using:
+
+A system from *Staphylococcus epidermidis* in *Staphylococcus epidermidis* has an anti-phage effect against CNPx (Depardieu et al., 2016)
+
+A system from *Staphylococcus epidermidis* in *Staphylococcus aureus* has an anti-phage effect against phage 80alpha, phage 85, phiNM1, phiNM2, phiNM4 (Depardieu et al., 2016)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2016.08.010
+
+---
+::
diff --git a/content/2.defense-systems/thoeris.md b/content/2.defense-systems/thoeris.md
new file mode 100644
index 0000000000000000000000000000000000000000..fb25d6a7bfc4b3e2f6b9481fa35be5331dc96229
--- /dev/null
+++ b/content/2.defense-systems/thoeris.md
@@ -0,0 +1,48 @@
+---
+title: Thoeris
+---
+
+## Example of genomic structure
+
+The Thoeris system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Thoeris_I subsystem in the genome of *Bacillus thuringiensis* (GCF_020809205.1) is composed of 2 proteins: ThsA_new_grand (WP_021728720.1)and, ThsB_Global (WP_021728719.1).
+
+{max-width=750px}
+
+Thoeris_II subsystem in the genome of *Acinetobacter baumannii* (GCF_014672775.1) is composed of 2 proteins: ThsB_Global (WP_000120680.1)and, ThsA_new_petit (WP_005134880.1).
+
+## Distribution of the system among prokaryotes
+
+The Thoeris system is present in a total of 286 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 812 genomes (3.6 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Thoeris system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Thoeris systems were experimentally validated using:
+
+A system from *Bacillus amyloliquefaciens* in *Bacillus subtilis* has an anti-phage effect against SPO1, SBSphiJ, SBSphiC (Doron et al., 2018)
+
+A system from *Bacillus cereus* in *Bacillus subtilis* has an anti-phage effect against phi29, SBSphiC, SPO1, SBSphiJ (Doron et al., 2018; Ofir et al., 2021)
+
+A system from *Bacillus dafuensis* in *Bacillus subtilis* has an anti-phage effect against phi3T, SPBeta, SPR, SBSphi11, SBSphi13, phi29, SBSphiJ, SPO1 (Ofir et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1038/s41586-021-04098-7
+ - 10.1126/science.aar4120
+
+---
+::
diff --git a/content/2.defense-systems/tiamat.md b/content/2.defense-systems/tiamat.md
new file mode 100644
index 0000000000000000000000000000000000000000..4056a7e0b5aeff9de44fec543ab4ba8f3b140fa0
--- /dev/null
+++ b/content/2.defense-systems/tiamat.md
@@ -0,0 +1,39 @@
+---
+title: Tiamat
+---
+
+## Example of genomic structure
+
+The Tiamat system is composed of one protein: TmtA_2599863134.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Tiamat system in the genome of *Pseudomonas aeruginosa* (GCF_022638055.1) is composed of 1 protein: TmtA_2731770353 (WP_023121076.1).
+
+## Distribution of the system among prokaryotes
+
+The Tiamat system is present in a total of 228 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 342 genomes (1.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Tiamat system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Tiamat systems were experimentally validated using:
+
+A system from *Bacillus cereus* in *Escherichia coli* has an anti-phage effect against T6, T5 (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/uzume.md b/content/2.defense-systems/uzume.md
new file mode 100644
index 0000000000000000000000000000000000000000..14396e886abfa3b1f5b739ffb21aa2af40d706a3
--- /dev/null
+++ b/content/2.defense-systems/uzume.md
@@ -0,0 +1,39 @@
+---
+title: Uzume
+---
+
+## Example of genomic structure
+
+The Uzume system is composed of one protein: UzuA_2660320622.
+
+Here is an example found in the RefSeq database:
+
+{max-width=750px}
+
+Uzume system in the genome of *Nocardioides euryhalodurans* (GCF_004564375.1) is composed of 1 protein: UzuA (WP_135074908.1).
+
+## Distribution of the system among prokaryotes
+
+The Uzume system is present in a total of 76 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 125 genomes (0.5 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Uzume system for the 14 phyla with more than 50 genomes in the RefSeq database.*
+
+## Experimental validation
+
+Uzume systems were experimentally validated using:
+
+A system from *Bacillus sp. FJAT-27231* in *Bacillus subtilis* has an anti-phage effect against SPO1, SP82G, SBSphiC (Millman et al., 2022)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1016/j.chom.2022.09.017
+
+---
+::
diff --git a/content/2.defense-systems/viperin.md b/content/2.defense-systems/viperin.md
index 3e8196ab143c7a55de35572580e72897b5a4162c..441f1427311d72594870a65f8afc2729750e2b79 100644
--- a/content/2.defense-systems/viperin.md
+++ b/content/2.defense-systems/viperin.md
@@ -1,22 +1,21 @@
---
title: Viperin
-layout: article
---
## Description
-Viperins, for “Virus Inhibitory Protein, Endoplasmic Reticulum-associated, INterferon-inducibleâ€, are antiviral enzymes whose expression is stimulated by interferons in eukaryotic cells. They are important components of eukaryotic innate immunity, and present antiviral activity against a wide diversity of viruses, including double-stranded DNA viruses, single-strand RNA viruses and retroviruses (1).
+Viperins, for “Virus Inhibitory Protein, Endoplasmic Reticulum-associated, INterferon-inducibleâ€, are antiviral enzymes whose expression is stimulated by interferons in eukaryotic cells. They are important components of eukaryotic innate immunity, and present antiviral activity against a wide diversity of viruses, including double-stranded DNA viruses, single-strand RNA viruses and retroviruses (1). Â
-Recently, Viperin-like enzymes were found in prokaryotes (pVips). Strikingly, like their eukaryotic counter-part with eukaryotic viruses, pVips provide clear protection against phage infection to their host, and therefore constitute a new defense system (2). Like eukaryotic Viperins, pVips produce modified nucleotides that block phage transcription, acting as chain terminators. They constitute a form of chemical defense. A recent study reported that pVips can be found in around 0.5% of prokaryotic genomes (3).
+Recently, Â Viperin-like enzymes were found in prokaryotes (pVips). Â Strikingly, like their eukaryotic counter-part with eukaryotic viruses, pVips provide clear protection against phage infection to their host, and therefore constitute a new defense system (2). Like eukaryotic Viperins, pVips produce modified nucleotides that block phage transcription, acting as chain terminators. They constitute a form of chemical defense. A recent study reported that pVips can be found in around 0.5% of prokaryotic genomes (3).
## Molecular mechanism
Fig.1: Catalytic activity of human Viperin generates ddhCTP (Ebrahimi et al. al., 2020)
-Viperins are members of the radical S-adenosylmethionine (rSAM) superfamily. This group of enzymes use a \[4Fe-4S\] cluster to cleave S-adenosylmethionine (SAM) reductively, generating a radical which is generally transferred to a substrate. It was demonstrated that through their \[4Fe-4S\] cluster catalytic activity, eukaryotic viperins convert a ribonucleotide, the cytidine triphosphate (CTP) into a modified ribonucleotide, the 3′-deoxy-3′,4′-didehydro-CTP (ddhCTP) (4,5).
+Viperins are members of the radical S-adenosylmethionine (rSAM) superfamily. This group of enzymes use a [4Fe-4S] cluster to cleave S-adenosylmethionine (SAM) reductively, generating a radical which is generally transferred to a substrate. It was demonstrated that through their [4Fe-4S] cluster catalytic activity, eukaryotic viperins convert a ribonucleotide, the cytidine triphosphate (CTP) into a modified ribonucleotide, the 3′-deoxy-3′,4′-didehydro-CTP (ddhCTP) (4,5).Â
-Prokaryotic Viperins also convert ribonucleotides triphosphate into modified ribonucleotides, but contrary to their eukaryotic counterparts can use a diversity of substrates to produce ddhCTP, or ddh-guanosine triphosphate (ddhGTP), or ddh-uridine triphosphate (ddhUTP), or several of these nucleotides for certain pVips (2).
+Prokaryotic Viperins also convert ribonucleotides triphosphate into modified ribonucleotides, but contrary to their eukaryotic counterparts can use a diversity of substrates to produce  ddhCTP,  or ddh-guanosine triphosphate (ddhGTP), or ddh-uridine triphosphate (ddhUTP), or several of these nucleotides for certain pVips (2).
Compared to the initial ribonucleotide triphosphate, the modified ddh-nucleotide product of Viperins lacks a hydroxyl group at the 3′ carbon of the ribose (Fig.1). The ddh-nucleotides produced by Viperins can be used as substrates by some viral RNA polymerases. Because of their lost hydroxyl group at the 3’carbon of the ribose, once incorporated into the newly forming viral RNA chain, these ddh-nucleotides act as chain terminators. By preventing further polymerization of the viral RNA chain, ddh-nucleotides can inhibit viral replication (2,4,5).
@@ -26,9 +25,9 @@ The Viperin system is composed of one protein: pVip.
Here is an example found in the RefSeq database:
-<img src="./data/Viperin.svg">
+{max-width=750px}
-Viperin system in the genome of *Moritella yayanosii* is composed of 1 protein: pVip (WP\_112711942.1).
+Viperin system in the genome of *Moritella yayanosii* is composed of 1 protein: pVip (WP_112711942.1).
## Distribution of the system among prokaryotes
@@ -36,7 +35,7 @@ The Viperin system is present in a total of 85 different species.
Among the 22k complete genomes of RefSeq, this system is present in 118 genomes (0.5 %).
-<img src="./data/Distribution_Viperin.svg" width=800px>
+{max-width=750px}
*Proportion of genome encoding the Viperin system for the 14 phyla with more than 50 genomes in the RefSeq database.*
@@ -44,44 +43,48 @@ Among the 22k complete genomes of RefSeq, this system is present in 118 genomes
Viperin systems were experimentally validated using:
-Subsystem pVip6 with a system from *Selenomonas ruminatium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip6 with a system from *Selenomonas ruminatium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip7 with a system from *Fibrobacter sp. UWT3* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip7 with a system from *Fibrobacter sp. UWT3* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip9 with a system from *Vibrio porteresiae* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip9 with a system from *Vibrio porteresiae* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip12 with a system from *Ruegeria intermedia* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip12 with a system from *Ruegeria intermedia* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip15 with a system from *Coraliomargarita akajimensis* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip15 with a system from *Coraliomargarita akajimensis* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip21 with a system from *Lewinella persica* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip21 with a system from *Lewinella persica* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip32 with a system from *Phormidium sp. OSCR GFM* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip32 with a system from *Phormidium sp. OSCR GFM* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip34 with a system from *Cryomorphaceae bacterium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip34 with a system from *Cryomorphaceae bacterium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip37 with a system from *Shewanella sp. cp20* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip37 with a system from *Shewanella sp. cp20* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip39 with a system from *Burkholderiales-76 (UID4002)* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip39 with a system from *Burkholderiales-76 (UID4002)* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip44 with a system from *Chondromyces crocatus* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip44 with a system from *Chondromyces crocatus* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip46 with a system from *Photobacterium swingsii* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip46 with a system from *Photobacterium swingsii* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip57 with a system from *Flavobacterium lacus* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip57 with a system from *Flavobacterium lacus* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip58 with a system from *Pseudoalteromonas ulvae* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip58 with a system from *Pseudoalteromonas ulvae* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip60 with a system from *Lacinutrix sp. JCM 13824* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip60 with a system from *Lacinutrix sp. JCM 13824* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip61 with a system from *Euryarchaeota archaeon SCGC AG-487_M08* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip61 with a system from *Euryarchaeota archaeon SCGC AG-487_M08* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip62 with a system from *Fibrobacteria bacterium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip62 with a system from *Fibrobacteria bacterium* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
-Subsystem pVip63 with a system from *Pseudoalteromonas sp. XI10* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
+Subsystem pVip63 with a system from *Pseudoalteromonas sp. XI10* in *Escherichia coli* has an anti-phage effect against T7 (Bernheim et al., 2020)
## Relevant abstracts
-**Bernheim, A. et al. Prokaryotic viperins produce diverse antiviral molecules. Nature 589, 120-124 (2021).**
-Viperin is an interferon-induced cellular protein that is conserved in animals1. It has previously been shown to inhibit the replication of multiple viruses by producing the ribonucleotide 3?-deoxy-3?,4?-didehydro (ddh)-cytidine triphosphate (ddhCTP), which acts as a chain terminator for viral RNA polymerase2. Here we show that eukaryotic viperin originated from a clade of bacterial and archaeal proteins that protect against phage infection. Prokaryotic viperins produce a set of modified ribonucleotides that include ddhCTP, ddh-guanosine triphosphate (ddhGTP) and ddh-uridine triphosphate (ddhUTP). We further show that prokaryotic viperins protect against T7 phage infection by inhibiting viral polymerase-dependent transcription, suggesting that it has an antiviral mechanism of action similar to that of animal viperin. Our results reveal a class of potential natural antiviral compounds produced by bacterial immune systems.
+::article-doi-list
+---
+items:
+ - 10.1038/s41586-020-2762-2
+---
+::
diff --git a/content/2.defense-systems/wadjet.md b/content/2.defense-systems/wadjet.md
new file mode 100644
index 0000000000000000000000000000000000000000..14e56e676af27f666bb6355a271efea9aa6f6d45
--- /dev/null
+++ b/content/2.defense-systems/wadjet.md
@@ -0,0 +1,41 @@
+---
+title: Wadjet
+---
+
+## Example of genomic structure
+
+The Wadjet system have been describe in a total of 4 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Wadjet_I subsystem in the genome of *Bifidobacterium pseudocatenulatum* (GCF_021484885.1) is composed of 4 proteins: JetA_I (WP_195524168.1), JetB_I (WP_195523897.1), JetC_I (WP_195523898.1)and, JetD_I (WP_229067172.1).
+
+{max-width=750px}
+
+Wadjet_II subsystem in the genome of *Streptomyces sp.* (GCF_023273835.1) is composed of 4 proteins: JetD_II (WP_248777007.1), JetC_II (WP_248777008.1), JetB_II (WP_248777009.1)and, JetA_II (WP_248777010.1).
+
+{max-width=750px}
+
+Wadjet_III subsystem in the genome of *Caldibacillus thermoamylovorans* (GCF_003096215.1) is composed of 4 proteins: JetD_III (WP_108897743.1), JetA_III (WP_108897744.1), JetB_III (WP_034768879.1)and, JetC_III (WP_108897745.1).
+
+## Distribution of the system among prokaryotes
+
+The Wadjet system is present in a total of 1151 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 2380 genomes (10.4 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Wadjet system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1126/science.aar4120
+
+---
+::
diff --git a/content/2.defense-systems/zorya.md b/content/2.defense-systems/zorya.md
new file mode 100644
index 0000000000000000000000000000000000000000..80cb000ae90fe87d67526566814b99aed75597f0
--- /dev/null
+++ b/content/2.defense-systems/zorya.md
@@ -0,0 +1,48 @@
+---
+title: Zorya
+---
+
+## Example of genomic structure
+
+The Zorya system have been describe in a total of 2 subsystems.
+
+Here is some example found in the RefSeq database:
+
+{max-width=750px}
+
+Zorya_TypeI subsystem in the genome of *Pseudomonas aeruginosa* (GCF_002085605.1) is composed of 4 proteins: ZorD (WP_015649020.1), ZorC (WP_015649021.1), ZorB (WP_015649022.1)and, ZorA (WP_025297974.1).
+
+{max-width=750px}
+
+Zorya_TypeII subsystem in the genome of *Legionella longbeachae* (GCF_011465255.1) is composed of 3 proteins: ZorA2 (WP_050777601.1), ZorB (WP_003632756.1)and, ZorE (WP_050777600.1).
+
+## Distribution of the system among prokaryotes
+
+The Zorya system is present in a total of 304 different species.
+
+Among the 22k complete genomes of RefSeq, this system is present in 840 genomes (3.7 %).
+
+{max-width=750px}
+
+*Proportion of genome encoding the Zorya system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.*
+
+## Experimental validation
+
+Zorya systems were experimentally validated using:
+
+Subsystem Type I with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against LambdaVir, SECphi27, T7 (Doron et al., 2018)
+
+Subsystem Type II with a system from *Escherichia coli* in *Escherichia coli* has an anti-phage effect against T7, SECphi17 (Doron et al., 2018)
+
+Subsystem Type III with a system from *Stenotrophomonas nitritireducens* in *Escherichia coli* has an anti-phage effect against T1, T4, T7, LambdaVir, PVP-SE1 (Payne et al., 2021)
+
+## Relevant abstracts
+
+::article-doi-list
+---
+items:
+ - 10.1093/nar/gkab883
+ - 10.1126/science.aar4120
+
+---
+::
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diff --git a/public/Distribution_AbiE.svg b/public/abie/Distribution_AbiE.svg
similarity index 100%
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diff --git a/public/AVAST_I.svg b/public/avast/AVAST_I.svg
similarity index 100%
rename from public/AVAST_I.svg
rename to public/avast/AVAST_I.svg
diff --git a/public/AVAST_II.svg b/public/avast/AVAST_II.svg
similarity index 100%
rename from public/AVAST_II.svg
rename to public/avast/AVAST_II.svg
diff --git a/public/AVAST_III.svg b/public/avast/AVAST_III.svg
similarity index 100%
rename from public/AVAST_III.svg
rename to public/avast/AVAST_III.svg
diff --git a/public/AVAST_IV.svg b/public/avast/AVAST_IV.svg
similarity index 100%
rename from public/AVAST_IV.svg
rename to public/avast/AVAST_IV.svg
diff --git a/public/AVAST_V.svg b/public/avast/AVAST_V.svg
similarity index 100%
rename from public/AVAST_V.svg
rename to public/avast/AVAST_V.svg
diff --git a/public/Distribution_AVAST.svg b/public/avast/Distribution_AVAST.svg
similarity index 100%
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rename to public/avast/Distribution_AVAST.svg
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diff --git a/public/paris_ii_merge.svg b/public/old/paris_ii_merge.svg
similarity index 100%
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