diff --git a/content/3.defense-systems/abi2.md b/content/3.defense-systems/abi2.md
index 0c2570d41a8f9fda4b4e16a83a8b13bfb7441ea0..a6edcce14c02abd3b86ba829f2669cd79062768a 100644
--- a/content/3.defense-systems/abi2.md
+++ b/content/3.defense-systems/abi2.md
@@ -44,30 +44,14 @@ As far as we are aware, the molecular mechanisms remain unclear.
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Abi2 is detected in 1231 genomes (5.4 %).
-
-The system was detected in 202 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Abi2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-## Structure
-
-### Abi2/AbiD
-
-##### Example 1
+::article-system-distribution-plot
+::
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abid/AbiD__AbiD.cif
+## Structure
----
+::article-structure
::
-
## Experimental validation
As Abi2 is a group of different Abortive infection systems, here is the experimental validation of AbiD:
diff --git a/content/3.defense-systems/abia.md b/content/3.defense-systems/abia.md
index e1c75307d7b7638233a59dc36632defb14e3cf83..c5b8b6d3e9e419f7130d99374ceab5802b2cda5c 100644
--- a/content/3.defense-systems/abia.md
+++ b/content/3.defense-systems/abia.md
@@ -54,24 +54,11 @@ The AbiA_small system in *Alicyclobacillus sp. SO9* (GCF_016406125.1, NZ_CP06633
::article-system-distribution-plot
::
-
## Structure
-
-::system-operon-structure
-::
-
-### pDockQ matrix
-
-::pdockq-matrix
-::
-
-### List predicted structures
-
::article-structure
::
-
## Experimental validation
diff --git a/content/3.defense-systems/abib.md b/content/3.defense-systems/abib.md
index 47765f3e85bf46462658ac92dbad92785bb63bb6..edb821c4932de1aba9b8f3534f03ba0656d8eb12 100644
--- a/content/3.defense-systems/abib.md
+++ b/content/3.defense-systems/abib.md
@@ -38,27 +38,12 @@ The AbiB system in *Lactococcus cremoris* (GCF_000312685.1, NC_019430) is compos
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiB is detected in 11 genomes (0.05 %).
-
-The system was detected in 5 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiB system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiB
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abib/AbiB__AbiB.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abic.md b/content/3.defense-systems/abic.md
index df23651d9b2668d2f4f5da5d1bbe2922d6987fed..fbc7be6d7659cfeef1665929f70d6234c62c2a5b 100644
--- a/content/3.defense-systems/abic.md
+++ b/content/3.defense-systems/abic.md
@@ -45,27 +45,12 @@ The AbiC system in *Cupriavidus pauculus* (GCF_008693385.1, NZ_CP044066) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiC is detected in 91 genomes (0.4 %).
-
-The system was detected in 57 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiC
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abic/AbiC__AbiC.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abid.md b/content/3.defense-systems/abid.md
index 6520eff83ffddfbb620a2017aa4e60534a6dc075..f054af6554f8e038497671c23fbafe463ba129ac 100644
--- a/content/3.defense-systems/abid.md
+++ b/content/3.defense-systems/abid.md
@@ -45,27 +45,12 @@ The AbiD system in *Idiomarina sp. OT37-5b* (GCF_002968395.1, NZ_CP027188) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiD is detected in 2713 genomes (11.9 %).
-
-The system was detected in 964 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiD system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiD
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abid/AbiD__AbiD.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abie.md b/content/3.defense-systems/abie.md
index 10ca234e9b421634d3d3078fa3a761fe812d3943..904557ab8974fc1b58a5ce1338ded9a39579db70 100644
--- a/content/3.defense-systems/abie.md
+++ b/content/3.defense-systems/abie.md
@@ -48,28 +48,12 @@ The AbiE system in *Halomonas piezotolerans* (GCF_012427705.1, NZ_CP048602) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiE is detected in 3708 genomes (16.26 %).
-
-The system was detected in 1107 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiE
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abie/AbiE.AbiE__AbiEi.0.V.cif
- - /abie/AbiE.AbiE__AbiEii.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abig.md b/content/3.defense-systems/abig.md
index 9801bd37ccfdc82a5311af126dec33b98d5fd1b6..b39c6d35d39e354db6dc2fc5201c103bdb771b1a 100644
--- a/content/3.defense-systems/abig.md
+++ b/content/3.defense-systems/abig.md
@@ -45,28 +45,12 @@ The AbiG system in *Staphylococcus simulans* (GCF_900474685.1, NZ_LS483313) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiG is detected in 32 genomes (0.14 %).
-
-The system was detected in 22 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiG system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiG
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abig/AbiG.AbiG__AbiGi.0.V.cif
- - /abig/AbiG.AbiG__AbiGii.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abih.md b/content/3.defense-systems/abih.md
index 3c5afac56a7445f9bf5dc57a3f1860f11dd2777b..e293d00f0bfd5a64fd382795741bae3139da7a40 100644
--- a/content/3.defense-systems/abih.md
+++ b/content/3.defense-systems/abih.md
@@ -43,27 +43,12 @@ The AbiH system in *Bacteroides faecium* (GCF_012113595.1, NZ_CP050831) is compo
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiH is detected in 1225 genomes (5.37 %).
-
-The system was detected in 439 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiH system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiH
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abih/AbiH__AbiH.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abii.md b/content/3.defense-systems/abii.md
index dee72be7742e70f516e237ebde52a8adf87e2d3e..8919e1925ce1381722dca2453faa1f6cbd99d1d4 100644
--- a/content/3.defense-systems/abii.md
+++ b/content/3.defense-systems/abii.md
@@ -39,27 +39,12 @@ The AbiI system in *Macrococcus brunensis* (GCF_022343725.1, NZ_CP092179) is com
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiI is detected in 6 genomes (0.03 %).
-
-The system was detected in 6 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiI system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiI
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abii/AbiI__AbiI.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abij.md b/content/3.defense-systems/abij.md
index e5ca455a486a30c1c2c485cccfb97b88a6dc5929..44fd2f77bae7ea4e396a504f9f5a1d3983292005 100644
--- a/content/3.defense-systems/abij.md
+++ b/content/3.defense-systems/abij.md
@@ -44,27 +44,12 @@ The AbiJ system in *Marinobacter sp. LQ44* (GCF_001447155.2, NZ_CP014754) is com
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiJ is detected in 686 genomes (3.01 %).
-
-The system was detected in 261 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiJ system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiJ
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abij/AbiJ__AbiJ.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abik.md b/content/3.defense-systems/abik.md
index 8d64fed9c19ac3606511620f08b0570e7434b30c..340a2100920bc2446e2bef478fdfe58ca3e22620 100644
--- a/content/3.defense-systems/abik.md
+++ b/content/3.defense-systems/abik.md
@@ -48,27 +48,12 @@ The AbiK system in *Lactobacillus ultunensis* (GCF_016647595.1, NZ_CP059829) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiK is detected in 107 genomes (0.47 %).
-
-The system was detected in 32 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiK system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiK
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abik/AbiK__AbiK.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abil.md b/content/3.defense-systems/abil.md
index f8034e56ac6e068a80d00e303b07deba3be39a18..8fd4f8cc24fa6896b72322337715c3bc79204532 100644
--- a/content/3.defense-systems/abil.md
+++ b/content/3.defense-systems/abil.md
@@ -40,28 +40,12 @@ The AbiL system in *Sulfurimonas sp. SWIR-19* (GCF_020410885.1, NZ_CP084578) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiL is detected in 188 genomes (0.82 %).
-
-The system was detected in 126 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiL system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiL
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abil/AbiL.AbiL__AbiLi.0.V.cif
- - /abil/AbiL.AbiL__AbiLii.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abin.md b/content/3.defense-systems/abin.md
index 4198f089bc081599b84c7a05c7e735bd72ae36dc..9d865a204ee4f41c9c1e743ad70a8c66f446568c 100644
--- a/content/3.defense-systems/abin.md
+++ b/content/3.defense-systems/abin.md
@@ -42,27 +42,12 @@ The AbiN system in *Listeria innocua* (GCF_023078395.1, NZ_CP095723) is composed
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiN is detected in 165 genomes (0.72 %).
-
-The system was detected in 52 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiN system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiN
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abin/AbiN__AbiN.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abio.md b/content/3.defense-systems/abio.md
index efce870bfcf0dd57d7a9ca0275d1f6519fc821c2..e40313653c251c9f31de718839b2d593cc037e63 100644
--- a/content/3.defense-systems/abio.md
+++ b/content/3.defense-systems/abio.md
@@ -45,27 +45,12 @@ The AbiO system in *Pantoea agglomerans* (GCF_004117135.1, NZ_CP034477) is compo
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiO is detected in 100 genomes (0.44 %).
-
-The system was detected in 61 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiO system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiO
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abio/AbiO__AbiO.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abip2.md b/content/3.defense-systems/abip2.md
index 320dd47010d9a6d277889f817633582abb935078..1329a6eefa0a97ab639279933adf168750d9c5e9 100644
--- a/content/3.defense-systems/abip2.md
+++ b/content/3.defense-systems/abip2.md
@@ -50,27 +50,12 @@ The AbiP2 system in *Halomonas alkaliphila* (GCF_003612795.1, NZ_CP024811) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiP2 is detected in 299 genomes (1.31 %).
-
-The system was detected in 96 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiP2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiP2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abip2/AbiP2__AbiP2.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abiq.md b/content/3.defense-systems/abiq.md
index 0772b3891494c1e13f42d01e4cf190d65839886c..b660b83157fe9532d3bc1610a499470c7796436b 100644
--- a/content/3.defense-systems/abiq.md
+++ b/content/3.defense-systems/abiq.md
@@ -49,39 +49,12 @@ The AbiQ system in *Planococcus faecalis* (GCF_002009235.1, NZ_CP019401) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiQ is detected in 258 genomes (1.13 %).
-
-The system was detected in 111 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiQ system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-## Structure
-### Experimentally determined structure
-
-From :ref{doi=10.1111/mmi.12129} in *Lactococcus lactis*:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrl: /abiq/4glk_LlAbiQ_1mer.cif
----
+::article-system-distribution-plot
::
-
## Structure
-### AbiQ
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abiq/AbiQ__AbiQ.cif
-
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abir.md b/content/3.defense-systems/abir.md
index ac281bc6a9ce564e0ddac97b47f230a8f9202aa3..ac8756017ba1436e45a83427092260b063c04186 100644
--- a/content/3.defense-systems/abir.md
+++ b/content/3.defense-systems/abir.md
@@ -45,29 +45,12 @@ The AbiR system in *Clostridium perfringens* (GCF_016027155.1, NZ_CP065677) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiR is detected in 51 genomes (0.22 %).
-
-The system was detected in 28 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiR system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiR
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abir/AbiR.AbiR__AbiRc.0.V.cif
- - /abir/AbiR.AbiR__AbiRb.0.V.cif
- - /abir/AbiR.AbiR__AbiRa.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abit.md b/content/3.defense-systems/abit.md
index 17acc1a42e9eac7f862c9be60eeb3965990e867a..4628d30723dadf94b15c86763025686c744f3d86 100644
--- a/content/3.defense-systems/abit.md
+++ b/content/3.defense-systems/abit.md
@@ -44,28 +44,12 @@ The AbiT system in *Bdellovibrio bacteriovorus* (GCF_000317895.1, NC_019567) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiT is detected in 8 genomes (0.04 %).
-
-The system was detected in 6 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiT system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiT
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abit/AbiT.AbiT__AbiTi.0.V.cif
- - /abit/AbiT.AbiT__AbiTii.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abiu.md b/content/3.defense-systems/abiu.md
index 152653e00632603b95abc8e5adb343e8c9aa9cec..33aa7bc5b817b88eb0ade9f9fe4ff0c5518d22a9 100644
--- a/content/3.defense-systems/abiu.md
+++ b/content/3.defense-systems/abiu.md
@@ -38,27 +38,12 @@ The AbiU system in *Bacillus subtilis* (GCF_001889385.1, NZ_CP018295) is compose
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiU is detected in 950 genomes (4.17 %).
-
-The system was detected in 389 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiU system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiU
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abiu/AbiU__AbiU.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abiv.md b/content/3.defense-systems/abiv.md
index fc5be91c116868f21c3b93b4e720682eb987da8e..4916084073dc1fae18420f4aff4179f518c55e08 100644
--- a/content/3.defense-systems/abiv.md
+++ b/content/3.defense-systems/abiv.md
@@ -41,26 +41,12 @@ The AbiV system in *Bacillus mycoides* (GCF_018739365.1, NZ_CP035984) is compose
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiV is detected in 97 genomes (0.43 %).
-
-The system was detected in 61 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiV system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiV
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abiv/AbiV__AbiV.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/abiz.md b/content/3.defense-systems/abiz.md
index aa6ef19fec1cd5d1fe5c43ff77dbd4d593eedbda..c6adbac480f8ab86234fa863fe5c49b63f516667 100644
--- a/content/3.defense-systems/abiz.md
+++ b/content/3.defense-systems/abiz.md
@@ -41,27 +41,12 @@ The AbiZ system in *Fusobacterium pseudoperiodonticum* (GCF_002763695.1, NZ_CP02
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiZ is detected in 118 genomes (0.52 %).
-
-The system was detected in 97 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### AbiZ
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /abiz/AbiZ__AbiZ.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/aditi.md b/content/3.defense-systems/aditi.md
index 41c7cdf6f49547395861cfc4d03508e8d470400c..c35decdf82df9048aefa1bc40df4dbad1e81960f 100644
--- a/content/3.defense-systems/aditi.md
+++ b/content/3.defense-systems/aditi.md
@@ -38,27 +38,12 @@ The Aditi system in *Streptococcus suis* (GCF_003288175.1, NZ_CP025419) is compo
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Aditi is detected in 40 genomes (0.18 %).
-
-The system was detected in 19 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Aditi system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Aditi
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /aditi/Aditi.Aditi__DitB.0.V.cif
- - /aditi/Aditi.Aditi__DitA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/avs.md b/content/3.defense-systems/avs.md
index dfc62f598f7ad366105c9808cb0549589feb5366..3e06a46638e2d99345585314411ffaa56235c5b2 100644
--- a/content/3.defense-systems/avs.md
+++ b/content/3.defense-systems/avs.md
@@ -66,15 +66,6 @@ The Avs_V system in *Klebsiella variicola* (GCF_015287155.1, NZ_CP063912) is com
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Avs is detected in 978 genomes (4.29 %).
-
-The system was detected in 366 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Avs system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
::article-system-distribution-plot
::
@@ -83,7 +74,6 @@ Proportion of genome encoding the Avs system for the 14 phyla with more than 50
::article-structure
::
-
## Experimental validation
diff --git a/content/3.defense-systems/azaca.md b/content/3.defense-systems/azaca.md
index 4d7b1da5186afd8d2ec0b754dae3a984c3e7c4ef..dd508e7cc7e8f6e30b39c1e358b32b2165472991 100644
--- a/content/3.defense-systems/azaca.md
+++ b/content/3.defense-systems/azaca.md
@@ -27,29 +27,12 @@ The Azaca system in *Gordonia polyisoprenivorans* (GCF_018135605.1, NZ_CP073075)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Azaca is detected in 203 genomes (0.89 %).
-
-The system was detected in 166 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Azaca system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Azaca
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /azaca/Azaca.Azaca__ZacA.0.V.cif
- - /azaca/Azaca.Azaca__ZacB.0.V.cif
- - /azaca/Azaca.Azaca__ZacC.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/borvo.md b/content/3.defense-systems/borvo.md
index ef634f1c745172a080ecf7d54e6ca7f5aac7b44d..0f794844ddd3f940e58d1cb39ae790c28ddf5d48 100644
--- a/content/3.defense-systems/borvo.md
+++ b/content/3.defense-systems/borvo.md
@@ -39,27 +39,12 @@ The Borvo system in *Enterobacter cloacae complex sp. ECL78* (GCF_019056615.1, N
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Borvo is detected in 177 genomes (0.78 %).
-
-The system was detected in 79 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Borvo system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Borvo
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /borvo/Borvo__BovA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/brex.md b/content/3.defense-systems/brex.md
index 015028c900d5a9d1e94cff35105a9fc712906532..68caa04c6923b2c27ce677933244f722f402ee9a 100644
--- a/content/3.defense-systems/brex.md
+++ b/content/3.defense-systems/brex.md
@@ -75,93 +75,14 @@ The BREX_VI system in *Virgibacillus halodenitrificans* (GCF_001878675.1, NZ_CP0
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the BREX is detected in 1658 genomes (7.27 %).
-
-The system was detected in 888 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the BREX system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-
::article-structure
::
-
-### BREX_II
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /brex/BREX_VI.BREX__brxHI.0.DF.cif
- - /brex/BREX_VI.BREX__brxD.0.DF.cif
- - /brex/BREX_II.BREX__pglY.0.DF.cif
- - /brex/BREX_II.BREX__pglX2.0.DF.cif
- - /brex/BREX_II.BREX__pglW.0.DF.cif
-
----
-::
-### BREX_III
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /brex/BREX_III.BREX__brxF.0.DF.cif
- - /brex/BREX_III.BREX__pglXI.0.DF.cif
- - /brex/BREX_V.BREX__brxHII.0.DF.cif
- - /brex/BREX_III.BREX__pglZ3.0.DF.cif
- - /brex/BREX_III.BREX__brxA.0.DF.cif
-
----
-::
-### BREX_IV
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /brex/BREX_IV.BREX__brxP.0.DF.cif
- - /brex/BREX_IV.BREX__PglZ.0.DF.cif
-
----
-::
-### BREX_V
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /brex/BREX_V.BREX__brxHII.0.DF.cif
- - /brex/BREX_VI.BREX__pglZA.0.DF.cif
-
----
-::
-### BREX_VI
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /brex/BREX_VI.BREX__brxHI.0.DF.cif
- - /brex/BREX_VI.BREX__brxD.0.DF.cif
- - /brex/BREX_VI.BREX__pglZA.0.DF.cif
- - /brex/BREX_VI.BREX_brxA.0.DF.cif
- - /brex/BREX_VI.BREX__brxE.0.DF.cif
-
----
-::
-
## Experimental validation
diff --git a/content/3.defense-systems/bsta.md b/content/3.defense-systems/bsta.md
index dd03995df0f8b66c32cd7d9012e27e1246d801a5..bbe760566201b4d1ba59792ea61a3f31dcde87a6 100644
--- a/content/3.defense-systems/bsta.md
+++ b/content/3.defense-systems/bsta.md
@@ -41,29 +41,12 @@ The BstA system in *Vibrio harveyi* (GCF_021397735.1, NZ_CP090179) is composed o
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the BstA is detected in 236 genomes (1.03 %).
-
-The system was detected in 88 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the BstA system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### BstA
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /bsta/BstA__BstA.cif
- - /bsta/BstA__BstA1.cif
- - /bsta/BstA__BstA2.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/bunzi.md b/content/3.defense-systems/bunzi.md
index 8b63b2ed996513c77fa4cc804dd636fa935a1abd..8f7ae754509f6a3503ad3e8e374f6bc241dc1cc1 100644
--- a/content/3.defense-systems/bunzi.md
+++ b/content/3.defense-systems/bunzi.md
@@ -36,28 +36,12 @@ The Bunzi system in *Shewanella loihica* (GCF_000016065.1, NC_009092) is compose
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Bunzi is detected in 103 genomes (0.45 %).
-
-The system was detected in 58 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Bunzi system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Bunzi
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /bunzi/Bunzi.Bunzi__BnzB.0.V.cif
- - /bunzi/Bunzi.Bunzi__BnzA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/butters_gp30_gp31.md b/content/3.defense-systems/butters_gp30_gp31.md
index 371b37a795d8b80423fb242be6bfb80d9caa7c90..2dc5437677e8c15acb6b6e21dab028746aee26dc 100644
--- a/content/3.defense-systems/butters_gp30_gp31.md
+++ b/content/3.defense-systems/butters_gp30_gp31.md
@@ -40,28 +40,12 @@ The Butters_gp30_gp31 system in *Snodgrassella alvi* (GCF_022870965.1, NZ_CP0915
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Butters_gp30_gp31 is detected in 38 genomes (0.17 %).
-
-The system was detected in 34 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Butters_gp30_gp31 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Butters_gp30_gp31
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp30.cif
- - /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp31.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/butters_gp57r.md b/content/3.defense-systems/butters_gp57r.md
index 55c952461dbec51fa6ececf2772d4a9dc08b814b..df6c786cd0d2551e154539bd821fd50cce79c69c 100644
--- a/content/3.defense-systems/butters_gp57r.md
+++ b/content/3.defense-systems/butters_gp57r.md
@@ -26,27 +26,12 @@ The Butters_gp57r system in *Mycobacteroides immunogenum* (GCF_001605725.1, NZ_C
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Butters_gp57r is detected in 10 genomes (0.04 %).
-
-The system was detected in 7 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Butters_gp57r system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Butters_gp57r
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /butters_gp57r/Butters_gp57r__gp57r.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/caprel.md b/content/3.defense-systems/caprel.md
index 0570be53c5f511cc4564fc643ed039659d2770bd..d5d4d56f0b028c409a060b5bc7836eecc9153d8c 100644
--- a/content/3.defense-systems/caprel.md
+++ b/content/3.defense-systems/caprel.md
@@ -42,27 +42,12 @@ The CapRel system in *Campylobacter sp. RM12175* (GCF_002139875.1, NZ_CP018793)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the CapRel is detected in 398 genomes (1.75 %).
-
-The system was detected in 217 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the CapRel system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### CapRel
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /caprel/CapRel__CapRel.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/card_nlr.md b/content/3.defense-systems/card_nlr.md
index e6b6fe9bc4158786443170c7553e713481351c60..c6019923e8cc6b864bdec10c463534006c9178c2 100644
--- a/content/3.defense-systems/card_nlr.md
+++ b/content/3.defense-systems/card_nlr.md
@@ -51,18 +51,12 @@ The CARD_NLR_like system in *Sphingomonas sanguinis* (GCF_019297835.1, NZ_CP0792
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the CARD_NLR is detected in 80 genomes (0.35 %).
-
-The system was detected in 57 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the CARD_NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.
+::article-system-distribution-plot
+::
## Structure
-::info
-This section is empty
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/cas.md b/content/3.defense-systems/cas.md
index 67a297f2f52c9853125db5b85539acdbff0de907..98e4daed13af1b514fc633a96adc1110a7425b9a 100644
--- a/content/3.defense-systems/cas.md
+++ b/content/3.defense-systems/cas.md
@@ -46,18 +46,12 @@ The CAS_Class2-Subtype-VI-A system in *Leptotrichia shahii* (GCF_008327825.1, NZ
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the AbiC is detected in 8581 genomes (37.63 %).
-
-The system was detected in 2905 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.
+::article-system-distribution-plot
+::
## Structure
-::info
-This section is empty
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/cbass.md b/content/3.defense-systems/cbass.md
index c38627e05c0ac748eaa69d632945599cc27e2768..194fd0de17cdd846d0544547de54b6a32aa760d3 100644
--- a/content/3.defense-systems/cbass.md
+++ b/content/3.defense-systems/cbass.md
@@ -44,72 +44,12 @@ The CBASS_IV system in *Flavobacterium alkalisoli* (GCF_008000935.1, NZ_CP042831
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the CBASS is detected in 2914 genomes (12.78 %).
-
-The system was detected in 1290 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the CBASS system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### CBASS_I
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.cif
- - /cbass/CBASS_I.CBASS__TM.0.V.cif
-
----
-::
-### CBASS_II
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /cbass/CBASS_II.CBASS__Phospholipase.0.V.cif
- - /cbass/CBASS_II.CBASS__AG_E2_Prok-E2.0.V.cif
- - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.cif
- - /cbass/CBASS_II.CBASS__Jab.0.V.cif
-
----
-::
-### CBASS_III
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /cbass/CBASS_III.CBASS__Endonuc_small.0.V.cif
- - /cbass/CBASS_I.CBASS__Cyclase_II.0.V.cif
- - /cbass/CBASS_III.CBASS__bacHORMA_2.0.V.cif
- - /cbass/CBASS_III.CBASS__HORMA.0.V.cif
- - /cbass/CBASS_III.CBASS__TRIP13.0.V.cif
-
----
+::article-system-distribution-plot
::
-### CBASS_IV
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /cbass/CBASS_IV.CBASS__QueC.0.DF.cif
- - /cbass/CBASS_IV.CBASS__TGT.0.DF.cif
- - /cbass/CBASS_IV.CBASS__Cyclase_SMODS.0.DF.cif
- - /cbass/CBASS_IV.CBASS__2TM_type_IV.0.DF.cif
- - /cbass/CBASS_IV.CBASS__OGG.0.DF.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/charlie_gp32.md b/content/3.defense-systems/charlie_gp32.md
index 345f56ccca44292ae5969e23f2f2429368042bd4..9125e21fe817a420216e1604260b31b5b0e5cc33 100644
--- a/content/3.defense-systems/charlie_gp32.md
+++ b/content/3.defense-systems/charlie_gp32.md
@@ -26,27 +26,12 @@ The Charlie_gp32 system in *Mycobacterium liflandii* (GCF_000026445.2, NC_020133
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Charlie_gp32 is detected in 343 genomes (1.5 %).
-
-The system was detected in 47 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Charlie_gp32 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Charlie_gp32
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /charlie_gp32/Charlie_gp32__gp32.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dartg.md b/content/3.defense-systems/dartg.md
index 35c3cfb92ba0f223acd718336cb3805f1d4d99a1..0a6eec5fa30279e24dc6917b300116a7d18df121 100644
--- a/content/3.defense-systems/dartg.md
+++ b/content/3.defense-systems/dartg.md
@@ -41,28 +41,12 @@ The DarTG system in *Leptodesmis sichuanensis* (GCF_021379005.1, NZ_CP075171) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the DarTG is detected in 952 genomes (4.17 %).
-
-The system was detected in 386 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the DarTG system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### DarTG
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dartg/DarTG.DarTG_DarT.0.DF.cif
- - /dartg/DarTG.DarTG_DarG.0.DF.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dazbog.md b/content/3.defense-systems/dazbog.md
index b8b0edd37100d3e8edf3552d9ae36ed66e0bd695..e7ad1c68d574b959cc7880cc4a47e66065740550 100644
--- a/content/3.defense-systems/dazbog.md
+++ b/content/3.defense-systems/dazbog.md
@@ -36,40 +36,12 @@ The Dazbog system in *Cyanobium gracile* (GCF_000316515.1, NC_019675) is compose
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Dazbog is detected in 55 genomes (0.24 %).
-
-The system was detected in 50 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Dazbog system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Dazbog
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dazbog/Dazbog.Dazbog__DzbA.1.V.cif
- - /dazbog/Dazbog.Dazbog__DzbB.1.V.cif
-
----
+::article-system-distribution-plot
::
-##### Example 2
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dazbog/Dazbog.Dazbog__DzbA.1.V.cif
- - /dazbog/Dazbog.Dazbog__DzbB.1.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dctpdeaminase.md b/content/3.defense-systems/dctpdeaminase.md
index b09fc6a9a8ac53e194aa15ffe88dd8c315bf6a33..10052c517dd1bfcf8f2abb8e10a07f626f6e4a2e 100644
--- a/content/3.defense-systems/dctpdeaminase.md
+++ b/content/3.defense-systems/dctpdeaminase.md
@@ -41,27 +41,12 @@ The dCTPdeaminase system in *Pseudomonas entomophila* (GCF_023277925.1, NZ_CP063
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the dCTPdeaminase is detected in 501 genomes (2.2 %).
-
-The system was detected in 294 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### dCTPdeaminase
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dctpdeaminase/dCTPdeaminase__dCTPdeaminase.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/ddmde.md b/content/3.defense-systems/ddmde.md
index b0eab0524601043d1c166beec49b47a1d5092a39..9aaa55d7035acbf2d884b8956748e889e5d7e6ce 100644
--- a/content/3.defense-systems/ddmde.md
+++ b/content/3.defense-systems/ddmde.md
@@ -23,31 +23,14 @@ The DdmDE system in *Vibrio coralliilyticus* (GCF_000772065.1, NZ_CP009617) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the DdmDE is detected in 135 genomes (0.59 %).
-
-The system was detected in 50 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the DdmDE system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### DdmDE
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /ddmde/DdmDE.DdmDE__DdmD.0.V.cif
- - /ddmde/DdmDE.DdmDE__DdmE.0.V.cif
----
+::article-structure
::
-
## Experimental validation
::info
diff --git a/content/3.defense-systems/detocs.md b/content/3.defense-systems/detocs.md
index 70b563b23128517fc0d01af72b91d8b4597f6b56..42df722bf15d1e7d888603b70ef4a472f077955e 100644
--- a/content/3.defense-systems/detocs.md
+++ b/content/3.defense-systems/detocs.md
@@ -56,42 +56,12 @@ The Detocs_hydrolase system in *Yersinia canariae* (GCF_009831415.1, NZ_CP043727
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Detocs is detected in 215 genomes (0.94 %).
-
-The system was detected in 128 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Detocs system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Detocs
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /detocs/Detocs__dtcC.cif
- - /detocs/Detocs__dtcB.cif
- - /detocs/Detocs__dtcA.cif
-
----
+::article-system-distribution-plot
::
-### Detocs_hydrolase
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /detocs/Detocs_hydrolase__dtcC.cif
- - /detocs/Detocs_hydrolase__dtcB.cif
- - /detocs/Detocs_hydrolase__dtcA.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dgtpase.md b/content/3.defense-systems/dgtpase.md
index f98bca9752dd43c3aa8bf82cc46f683513e935c3..eaafead9260c68514ad3f0740cc5df2bcd40d794 100644
--- a/content/3.defense-systems/dgtpase.md
+++ b/content/3.defense-systems/dgtpase.md
@@ -36,27 +36,12 @@ The dGTPase system in *Citrobacter sp. RHBSTW-00986* (GCF_013783065.1, NZ_CP0562
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the dGTPase is detected in 1531 genomes (6.71 %).
-
-The system was detected in 449 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### dGTPase
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dgtpase/dGTPase__Sp_dGTPase.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/disarm.md b/content/3.defense-systems/disarm.md
index 8dfbc5b779316d4e916cbdac196dc34f2e92361f..ebee7b68ef7c6fb9acb46d22a748e5df3f713b79 100644
--- a/content/3.defense-systems/disarm.md
+++ b/content/3.defense-systems/disarm.md
@@ -55,56 +55,12 @@ The DISARM_2 system in *Bacillus halotolerans* (GCF_018417515.1, NZ_CP070976) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the DISARM is detected in 298 genomes (1.31 %).
-
-The system was detected in 201 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the DISARM system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-## Structure
-### Experimentally determined structure
-From :ref{doi=10.1038/s41586-023-06855-2} in *Serratia sp*:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /disarm/7s9v_DrmAB_1_1mer.cif
- - /disarm/7s9w_DrmAB_1_1mer_dna.cif
----
+::article-system-distribution-plot
::
-### DISARM_1
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /disarm/DISARM_2.DISARM__drmC.0.V.cif
- - /disarm/DISARM_2.DISARM__drmB.0.V.cif
- - /disarm/DISARM_1.DISARM__drmA.0.DF.cif
- - /disarm/DISARM_1.DISARM_1__drmMI.0.DF.cif
- - /disarm/DISARM_1.DISARM_1__drmD.0.DF.cif
-
----
-::
-### DISARM_2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /disarm/DISARM_1.DISARM__drmA.0.DF.cif
- - /disarm/DISARM_2.DISARM__drmC.0.V.cif
- - /disarm/DISARM_2.DISARM_2__drmMII.0.V.cif
- - /disarm/DISARM_2.DISARM__drmB.0.V.cif
- - /disarm/DISARM_2.DISARM_2__drmE.0.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dnd.md b/content/3.defense-systems/dnd.md
index 29901798500f0a7570322e01024a14fd7a5958ed..a9bc18f0108fd645355e6bfbce6e28ac54d9bdcd 100644
--- a/content/3.defense-systems/dnd.md
+++ b/content/3.defense-systems/dnd.md
@@ -32,50 +32,12 @@ The Dnd_ABCDEFGH system in *Shewanella acanthi* (GCF_019457475.1, NZ_CP080413) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Dnd is detected in 376 genomes (1.65 %).
-
-The system was detected in 237 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Dnd system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Dnd_ABCDE
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.cif
- - /dnd/Dnd_ABCDE.Dnd__DndE.0.DF.cif
- - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.cif
- - /dnd/Dnd_ABCDE.Dnd__DndC.0.DF.cif
- - /dnd/Dnd_ABCDEFGH.Dnd__DndB.0.DF.cif
- - /dnd/Dnd_ABCDE.Dnd__DndA.0.DF.cif
-
----
+::article-system-distribution-plot
::
-### Dnd_ABCDEFGH
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dnd/Dnd_ABCDE.Dnd__DndA.0.DF.cif
- - /dnd/Dnd_ABCDEFGH.Dnd__DndB.0.DF.cif
- - /dnd/Dnd_ABCDE.Dnd__DndC.0.DF.cif
- - /dnd/Dnd_ABCDE.Dnd__DndD.0.DF.cif
- - /dnd/Dnd_ABCDE.Dnd__DndE.0.DF.cif
- - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptH.0.DF.cif
- - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptG.0.DF.cif
- - /dnd/Dnd_ABCDEFGH.Dnd_ABCDEFGH__DptF.0.DF.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dodola.md b/content/3.defense-systems/dodola.md
index 06726599903ebb84ac9b2ff0779aa6061f40849e..59f50cba0bc3f34eb196ae7c708bb722f2636263 100644
--- a/content/3.defense-systems/dodola.md
+++ b/content/3.defense-systems/dodola.md
@@ -39,28 +39,12 @@ The Dodola system in *Lacrimispora saccharolytica* (GCF_000144625.1, NC_014376)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Dodola is detected in 312 genomes (1.37 %).
-
-The system was detected in 91 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Dodola system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Dodola
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dodola/Dodola.Dodola__DolB.0.V.cif
- - /dodola/Dodola.Dodola__DolA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dpd.md b/content/3.defense-systems/dpd.md
index 272ef4b49ee3b4b62c4e38a517929494444a90e0..0359794dcc5ff2343645405d517045c64c6b43de 100644
--- a/content/3.defense-systems/dpd.md
+++ b/content/3.defense-systems/dpd.md
@@ -24,38 +24,12 @@ The Dpd system in *Colwellia sp. PAMC 20917* (GCF_001767295.1, NZ_CP014944) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Dpd is detected in 225 genomes (0.99 %).
-
-The system was detected in 103 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Dpd system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Dpd
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dpd/Dpd.Dpd__QueD.0.DF.cif
- - /dpd/Dpd.Dpd__DpdD.0.DF.cif
- - /dpd/Dpd.Dpd__DpdK.0.DF.cif
- - /dpd/Dpd.Dpd__DpdJ.0.DF.cif
- - /dpd/Dpd.Dpd__DpdI.0.DF.cif
- - /dpd/Dpd.Dpd__DpdH.0.DF.cif
- - /dpd/Dpd.Dpd__DpdG.0.DF.cif
- - /dpd/Dpd.Dpd__DpdF.0.DF.cif
- - /dpd/Dpd.Dpd__DpdE.0.DF.cif
- - /dpd/Dpd.Dpd__DpdB.0.DF.cif
- - /dpd/Dpd.Dpd__DpdA.0.DF.cif
- - /dpd/Dpd.Dpd__DpdC.0.DF.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/drt.md b/content/3.defense-systems/drt.md
index dc38258df175bd1336ef61d25196bf2289e6191a..e7756d050879e05a470def9660cc9b777a54a214 100644
--- a/content/3.defense-systems/drt.md
+++ b/content/3.defense-systems/drt.md
@@ -85,117 +85,12 @@ The DRT_5 system in *Klebsiella pasteurii* (GCF_018139045.1, NZ_CP073236) is com
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the DRT is detected in 1195 genomes (5.24 %).
-
-The system was detected in 577 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the DRT system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### DRT6
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT6__DRT6.cif
-
----
+::article-system-distribution-plot
::
-### DRT7
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT7__DRT7.cif
----
-::
-### DRT8
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT8__DRT8.cif
-
----
-::
-### DRT9
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT9__DRT9.cif
-
----
-::
-### DRT_1
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT_1.DRT_1__drt1b.0.V.cif
- - /drt/DRT_1.DRT_1__drt1a.0.V.cif
-
----
-::
-### DRT_2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT_2__drt2.cif
-
----
-::
-### DRT_3
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT_3.DRT_3__drt3b.0.V.cif
- - /drt/DRT_3.DRT_3__drt3a.0.V.cif
-
----
-::
-### DRT_4
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT_4__drt4.cif
-
----
-::
-### DRT_5
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /drt/DRT_5__drt5.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/druantia.md b/content/3.defense-systems/druantia.md
index 64a4057a30005dca3ee99b75f1463182eb8333c2..943a22717f46912e5c26fec1d92fe1cc53b23b05 100644
--- a/content/3.defense-systems/druantia.md
+++ b/content/3.defense-systems/druantia.md
@@ -46,57 +46,12 @@ The Druantia_III system in *Citrobacter werkmanii* (GCF_002025225.1, NZ_CP019986
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Druantia is detected in 807 genomes (3.54 %).
-
-The system was detected in 303 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Druantia system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Druantia_I
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /druantia/Druantia_I.Druantia_I__DruA.0.V.cif
- - /druantia/Druantia_I.Druantia_I__DruB.0.V.cif
- - /druantia/Druantia_I.Druantia_I__DruC.0.V.cif
- - /druantia/Druantia_I.Druantia_I__DruD.0.V.cif
- - /druantia/Druantia_I.Druantia__DruE.0.V.cif
-
----
+::article-system-distribution-plot
::
-### Druantia_II
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /druantia/Druantia_II.Druantia_II__DruM.0.DF.cif
- - /druantia/Druantia_II.Druantia_II__DruF.0.DF.cif
- - /druantia/Druantia_II.Druantia_II__DruG.0.DF.cif
- - /druantia/Druantia_II.Druantia__DruE_2.0.DF.cif
----
-::
-### Druantia_III
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /druantia/Druantia_III.Druantia_III__DruH.0.DF.cif
- - /druantia/Druantia_III.Druantia__DruE_3.0.DF.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/dsr.md b/content/3.defense-systems/dsr.md
index b8e0d9505424a2140b9c7353f4cbd09074d58fe6..9642375999a69dfe305a97dfaea4737231d50852 100644
--- a/content/3.defense-systems/dsr.md
+++ b/content/3.defense-systems/dsr.md
@@ -32,38 +32,12 @@ The Dsr_II system in *Deinococcus deserti* (GCF_000020685.1, NC_012526) is compo
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Dsr is detected in 246 genomes (1.08 %).
-
-The system was detected in 162 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Dsr system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Dsr_I
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dsr/Dsr_I__Dsr1.cif
-
----
+::article-system-distribution-plot
::
-### Dsr_II
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /dsr/Dsr_II__Dsr2.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/eleos.md b/content/3.defense-systems/eleos.md
index 11b7288d07a4a431cdab8042c520ab9297d1535a..5b4e14a015c0d42c1c9dce077eb1dec8389be432 100644
--- a/content/3.defense-systems/eleos.md
+++ b/content/3.defense-systems/eleos.md
@@ -39,40 +39,12 @@ The Eleos system in *Synechococcus sp. CBW1002* (GCF_015840915.1, NZ_CP060398) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Eleos is detected in 414 genomes (1.82 %).
-
-The system was detected in 223 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Eleos system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Experimentaly determined structure
-From :ref{doi=10.1371/journal.pone.0107211} in *Escherichia coli* (ETEC) strain H10407:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrl: /eleos/4aur_LeoA_1mer.pdb
----
+::article-system-distribution-plot
::
+## Structure
-
-### Eleos
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /eleos/Eleos.Eleos__LeoBC.0.V.cif
- - /eleos/Eleos.Eleos__LeoA.0.V.cif
-
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/fs_giy_yig.md b/content/3.defense-systems/fs_giy_yig.md
index 618bd1814f2749d7c4901ca751635695a4385261..2df3a35d4ea2448b29f41a111a72f0bcd59bc1d0 100644
--- a/content/3.defense-systems/fs_giy_yig.md
+++ b/content/3.defense-systems/fs_giy_yig.md
@@ -37,27 +37,12 @@ The FS_GIY_YIG system in *Klebsiella pneumoniae* (GCF_021389995.1, NZ_CP089989)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the FS_GIY_YIG is detected in 159 genomes (0.7 %).
-
-The system was detected in 87 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the FS_GIY_YIG system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### FS_GIY_YIG
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /fs_giy_yig/FS_GIY_YIG__GIY_YIG.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/fs_hepn_tm.md b/content/3.defense-systems/fs_hepn_tm.md
index 2f22ea488e127bd974e29f7145ee8c75fbea8056..f72d6dd846a7e42c93aef72508375becbcac99de 100644
--- a/content/3.defense-systems/fs_hepn_tm.md
+++ b/content/3.defense-systems/fs_hepn_tm.md
@@ -14,23 +14,12 @@ relevantAbstracts:
## Distribution of the system among prokaryotes
-::info
-This section is empty
+::article-system-distribution-plot
::
-
## Structure
-### FS_HEPN_TM
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /fs_hepn_tm/FS_HEPN_TM__TM.cif
- - /fs_hepn_tm/FS_HEPN_TM__HEPN.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/fs_hp.md b/content/3.defense-systems/fs_hp.md
index 14b818017df721c0a9291036a219dbf0de56dfd8..ac37f91000896cacfd03ed726ee650d1eccc8862 100644
--- a/content/3.defense-systems/fs_hp.md
+++ b/content/3.defense-systems/fs_hp.md
@@ -37,27 +37,12 @@ The FS_HP system in *Escherichia coli* (GCF_016944735.1, NZ_CP063511) is compose
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the FS_HP is detected in 93 genomes (0.41 %).
-
-The system was detected in 29 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the FS_HP system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### FS_HP
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /fs_hp/FS_HP__HP.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/fs_hp_sdh_sah.md b/content/3.defense-systems/fs_hp_sdh_sah.md
index 7eb720c5c38ae95265a34b66558e191f1dd0efa4..0c542dea6e28476f4953027da68beb0f9184feff 100644
--- a/content/3.defense-systems/fs_hp_sdh_sah.md
+++ b/content/3.defense-systems/fs_hp_sdh_sah.md
@@ -27,28 +27,12 @@ The FS_HP_SDH_sah system in *Escherichia coli* (GCF_904831805.1, NZ_LR882990) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the FS_HP_SDH_sah is detected in 6 genomes (0.03 %).
-
-The system was detected in 3 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the FS_HP_SDH_sah system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### FS_HP_SDH_sah
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /fs_hp_sdh_sah/FS_HP_SDH_sah__SDH_sah.cif
- - /fs_hp_sdh_sah/FS_HP_SDH_sah__HP.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/fs_hsdr_like.md b/content/3.defense-systems/fs_hsdr_like.md
index ef1367d9176beaa2672a4a5290b684b06e29fe2c..13c8603bf15a6cd8cef44365b30ed31f3a6acc0a 100644
--- a/content/3.defense-systems/fs_hsdr_like.md
+++ b/content/3.defense-systems/fs_hsdr_like.md
@@ -38,38 +38,12 @@ The FS_HsdR_like system in *Klebsiella pneumoniae* (GCF_009661415.2, NZ_CP062997
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the FS_HsdR_like is detected in 39 genomes (0.17 %).
-
-The system was detected in 15 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the FS_HsdR_like system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### FS_HsdR_like_HP-plddts_74.75219.html
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /fs_hsdr_like/FS_HsdR_like_HP.cif
-
----
+::article-system-distribution-plot
::
-### FS_HsdR_like_HdrR-plddts_88.7069.html
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /fs_hsdr_like/FS_HsdR_like_HdrR.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/fs_sma.md b/content/3.defense-systems/fs_sma.md
index 3f3f87bb86d1cbddeed7e3b409901ba1c11b7562..279c571fc5f479233799694fa805f516165f00fc 100644
--- a/content/3.defense-systems/fs_sma.md
+++ b/content/3.defense-systems/fs_sma.md
@@ -34,27 +34,12 @@ The Sma system in *Staphylococcus aureus* (GCF_022869625.1, NZ_CP064365) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Sma is detected in 578 genomes (2.53 %).
-
-The system was detected in 20 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the FS_Sma system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### FS_Sma
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /fs_sma/FS_Sma__Sma.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gabija.md b/content/3.defense-systems/gabija.md
index 32edba4e3996bb89bbd2d649de99890234c37fc0..8c3da38ac8df92e774c6d3c5fbb6706b781e185d 100644
--- a/content/3.defense-systems/gabija.md
+++ b/content/3.defense-systems/gabija.md
@@ -45,41 +45,12 @@ The Gabija system in *Roseomonas fluvialis* (GCF_022846615.1, NZ_AP025637) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gabija is detected in 2999 genomes (13.15 %).
-
-The system was detected in 1375 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gabija system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-
-### Experimentaly determined structure
-From :ref{doi=10.1038/s41586-023-06855-2} in *Bacillus cereus* VD045:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gabija/8sm3-assembly1_BcGajAB_4_4mer.cif
- - /gabija/8u7i-assembly1_BcGajAB_4_4mer_gad1.cif
----
+::article-system-distribution-plot
::
-### Gabija
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gabija/Gabija.Gabija__GajA.0.V.cif
- - /gabija/Gabija.Gabija_GajB.0.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_ape.md b/content/3.defense-systems/gao_ape.md
index ac95b51bab2ab2081947911e023e283969173094..bdbb00e82cb96dae12a265a1b16783f2f387ba4a 100644
--- a/content/3.defense-systems/gao_ape.md
+++ b/content/3.defense-systems/gao_ape.md
@@ -38,27 +38,12 @@ The Gao_Ape system in *Enterobacter mori* (GCF_018638795.1, NZ_CP071064) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Ape is detected in 76 genomes (0.33 %).
-
-The system was detected in 45 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Ape system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Ape
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_ape/Gao_Ape__ApeA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_her.md b/content/3.defense-systems/gao_her.md
index 4d8cf20bce23a83d3db866158d6e73d7909ebb6d..9d74ec93346188b582d172c869d3d5cb13772da8 100644
--- a/content/3.defense-systems/gao_her.md
+++ b/content/3.defense-systems/gao_her.md
@@ -35,65 +35,12 @@ The Gao_Her_SIR system in *Xanthomonas citri* (GCF_018831325.1, NZ_CP029270) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Her is detected in 231 genomes (1.01 %).
-
-The system was detected in 134 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Her system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-
-### Experimentaly determined structure
-
-From :ref{doi=10.1016/j.molcel.2023.11.010} in *Escherichia coli*:
-
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrl: /gao_her/8j4u_EcHerA_SIR2_6_12mer.cif
----
+::article-system-distribution-plot
::
-From :ref{doi=10.1016/j.molcel.2023.11.007} in *Escherichia coli*:
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_her/8sxx_EcSIR2_12mer.pdb
- - /gao_her/8sxx_EcHerA_SIR2_5_12mer.cif
- - /gao_her/8uae_EcHerA_SIR2_6_12mer_atpgamas.cif
- - /gao_her/8uaf_EcHerA_SIR2_6_12mer_nad.cif
----
-::
-
-### Gao_Her_DUF
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_her/Gao_Her_DUF.Gao_Her_DUF__DUF4297.0.V.cif
- - /gao_her/Gao_Her_DUF.Gao_Her_DUF__HerA_DUF.0.V.cif
-
----
-::
-### Gao_Her_SIR
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_her/Gao_Her_SIR.Gao_Her_SIR__HerA_SIR2.0.V.cif
- - /gao_her/Gao_Her_SIR.Gao_Her_SIR__SIR2.0.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_hhe.md b/content/3.defense-systems/gao_hhe.md
index 14eeda0713a67d91eb78b9919944a97582e61180..1a176be1d262661bba5090e2141895794af0da31 100644
--- a/content/3.defense-systems/gao_hhe.md
+++ b/content/3.defense-systems/gao_hhe.md
@@ -36,27 +36,12 @@ The Gao_Hhe system in *Thioalkalivibrio paradoxus* (GCF_000227685.2, NZ_CP007029
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Hhe is detected in 276 genomes (1.21 %).
-
-The system was detected in 56 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Hhe system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Hhe
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_hhe/Gao_Hhe__HheA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_iet.md b/content/3.defense-systems/gao_iet.md
index 7b059d99c56fa53cec10ee03a808f3ca4d428d61..62ef5b7b87f993238412394bb5f426035c24561a 100644
--- a/content/3.defense-systems/gao_iet.md
+++ b/content/3.defense-systems/gao_iet.md
@@ -38,28 +38,12 @@ The Gao_Iet system in *Salmonella sp. SJTUF14076* (GCF_015534835.1, NZ_CP064674)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Iet is detected in 389 genomes (1.71 %).
-
-The system was detected in 185 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Iet system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Iet
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_iet/Gao_Iet.Gao_Iet__IetA.0.V.cif
- - /gao_iet/Gao_Iet.Gao_Iet__IetS.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_mza.md b/content/3.defense-systems/gao_mza.md
index 7465559aaa1244b3dc36e71910837b737c3d919d..4a35dbb02b8b480a6410080c42f59cecf99a217b 100644
--- a/content/3.defense-systems/gao_mza.md
+++ b/content/3.defense-systems/gao_mza.md
@@ -36,31 +36,12 @@ The Gao_Mza system in *Massilia sp. Se16.2.3* (GCF_014171595.1, NZ_CP050451) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Mza is detected in 68 genomes (0.3 %).
-
-The system was detected in 32 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Mza system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Mza
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_mza/Gao_Mza.Gao_Mza__MzaE.0.V.cif
- - /gao_mza/Gao_Mza.Gao_Mza__MzaD.0.V.cif
- - /gao_mza/Gao_Mza.Gao_Mza__MzaC.0.V.cif
- - /gao_mza/Gao_Mza.Gao_Mza__MzaB.0.V.cif
- - /gao_mza/Gao_Mza.Gao_Mza__MzaA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_ppl.md b/content/3.defense-systems/gao_ppl.md
index 5eb5f79a6e25f29163a6494692e7c77be95d1838..0028e82f05f65b07f89d8c4c134cf2eb86a96740 100644
--- a/content/3.defense-systems/gao_ppl.md
+++ b/content/3.defense-systems/gao_ppl.md
@@ -37,27 +37,12 @@ The Gao_Ppl system in *Enterobacter sp. E76* (GCF_008931465.1, NZ_CP042499) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Ppl is detected in 276 genomes (1.21 %).
-
-The system was detected in 104 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Ppl system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Ppl
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_ppl/Gao_Ppl__PplA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_qat.md b/content/3.defense-systems/gao_qat.md
index 51c8c19f1f194cd64758b2e759afcfc37612db59..c6823ede441163aac253721aef7476dbd72b9050 100644
--- a/content/3.defense-systems/gao_qat.md
+++ b/content/3.defense-systems/gao_qat.md
@@ -27,30 +27,12 @@ The Gao_Qat system in *Ralstonia wenshanensis* (GCF_021173085.1, NZ_CP076413) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Qat is detected in 621 genomes (2.72 %).
-
-The system was detected in 267 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Qat system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Qat
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_qat/Gao_Qat.Gao_Qat__QatA.0.V.cif
- - /gao_qat/Gao_Qat.Gao_Qat__QatB.0.V.cif
- - /gao_qat/Gao_Qat.Gao_Qat__QatC.0.V.cif
- - /gao_qat/Gao_Qat.Gao_Qat__QatD.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_rl.md b/content/3.defense-systems/gao_rl.md
index 3e9c6fc7cb5d32156d2a1792043eb99e23e97a83..cd06c122756ea83b442a8cdb4d4c334b04c3e3d5 100644
--- a/content/3.defense-systems/gao_rl.md
+++ b/content/3.defense-systems/gao_rl.md
@@ -38,30 +38,12 @@ The Gao_RL system in *Methylocystis heyeri* (GCF_004802635.2, NZ_CP046053) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_RL is detected in 131 genomes (0.57 %).
-
-The system was detected in 74 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_RL system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_RL
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_rl/Gao_RL.Gao_RL__RL_A.0.V.cif
- - /gao_rl/Gao_RL.Gao_RL__RL_D.0.V.cif
- - /gao_rl/Gao_RL.Gao_RL__RL_B.0.V.cif
- - /gao_rl/Gao_RL.Gao_RL__RL_C.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_tery.md b/content/3.defense-systems/gao_tery.md
index 315610c61fbee42f2fc977e21bd64fb785364692..5454a27c24eab57ce714f5dc7289964b0acb73dd 100644
--- a/content/3.defense-systems/gao_tery.md
+++ b/content/3.defense-systems/gao_tery.md
@@ -26,29 +26,12 @@ The Gao_TerY system in *Arachidicoccus terrestris* (GCF_020042345.1, NZ_CP083387
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_TerY is detected in 126 genomes (0.55 %).
-
-The system was detected in 74 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_TerY system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_TerY
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_tery/Gao_TerY.Gao_TerY__TerYA.0.V.cif
- - /gao_tery/Gao_TerY.Gao_TerY__TerYB.0.V.cif
- - /gao_tery/Gao_TerY.Gao_TerY__TerYC.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_tmn.md b/content/3.defense-systems/gao_tmn.md
index 75f1ad68438c1186022ca7517b826fd960d32c72..a4340bd16e88d84a01ba8aecbff47044657126a3 100644
--- a/content/3.defense-systems/gao_tmn.md
+++ b/content/3.defense-systems/gao_tmn.md
@@ -37,27 +37,12 @@ The Gao_Tmn system in *Pectobacterium carotovorum* (GCF_009931215.1, NZ_CP034237
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Tmn is detected in 394 genomes (1.73 %).
-
-The system was detected in 84 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Tmn system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Tmn
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_tmn/Gao_Tmn__TmnA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gao_upx.md b/content/3.defense-systems/gao_upx.md
index 5a1c912416482b351709483c6c9dc33410c589e4..9fd8df8001119113acf2ad08d6925fe111d2bd47 100644
--- a/content/3.defense-systems/gao_upx.md
+++ b/content/3.defense-systems/gao_upx.md
@@ -36,27 +36,12 @@ The Gao_Upx system in *Serratia sp. JSRIV001* (GCF_019968745.1, NZ_CP074147) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Gao_Upx is detected in 39 genomes (0.17 %).
-
-The system was detected in 33 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Gao_Upx system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Gao_Upx
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gao_upx/Gao_Upx__UpxA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gaps1.md b/content/3.defense-systems/gaps1.md
index 15b49aa0a335911fb72b28de0074f7f0a743f4f7..224a2d65a264120e232364ee51b5229868dbd587 100644
--- a/content/3.defense-systems/gaps1.md
+++ b/content/3.defense-systems/gaps1.md
@@ -37,27 +37,12 @@ The GAPS1 system in *Hydrogenophaga sp. BPS33* (GCF_009859475.1, NZ_CP044549) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the GAPS1 is detected in 434 genomes (1.9 %).
-
-The system was detected in 56 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the GAPS1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### GAPS1
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gaps1/GAPS1__GAPS1.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gaps2.md b/content/3.defense-systems/gaps2.md
index 83bb496f6032d875107b75bf728a6fac705266ec..61da219424d76be3349f4136dfd727e0224a15be 100644
--- a/content/3.defense-systems/gaps2.md
+++ b/content/3.defense-systems/gaps2.md
@@ -35,27 +35,12 @@ The GAPS2 system in *Mannheimia sp. USDA-ARS-USMARC-1261* (GCF_000521605.1, NZ_C
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the GAPS2 is detected in 725 genomes (3.18 %).
-
-The system was detected in 208 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the GAPS2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### GAPS2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gaps2/GAPS2__GAPS2.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gaps4.md b/content/3.defense-systems/gaps4.md
index 065ccb149d8a4c1ae6412297ca6e7c01638ec67b..566298f64ab55336de9ace837b78d39b47f228b8 100644
--- a/content/3.defense-systems/gaps4.md
+++ b/content/3.defense-systems/gaps4.md
@@ -36,29 +36,12 @@ The GAPS4 system in *Hafnia alvei* (GCF_902387815.1, NZ_LR699008) is composed of
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the GAPS4 is detected in 118 genomes (0.52 %).
-
-The system was detected in 74 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the GAPS4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### GAPS4
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gaps4/GAPS4__GAPS4a.cif
- - /gaps4/GAPS4__GAPS4b.cif
-
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gaps6.md b/content/3.defense-systems/gaps6.md
index 22188f4cf2ea8e694c8e56ec4372b36c9be6dee3..40b7ee209cfcf1beddadad1381d34f353c9afdad 100644
--- a/content/3.defense-systems/gaps6.md
+++ b/content/3.defense-systems/gaps6.md
@@ -38,30 +38,12 @@ The GAPS6 system in *Escherichia coli* (GCF_013372365.1, NZ_CP054227) is compose
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the GAPS6 is detected in 50 genomes (0.22 %).
-
-The system was detected in 33 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the GAPS6 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### GAPS6
-
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gaps6/GAPS6__GAPS6a.cif
- - /gaps6/GAPS6__GAPS6b.cif
-
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/gasdermin.md b/content/3.defense-systems/gasdermin.md
index 277462ffc60f48243b880994df43776651c4bc0f..112c8eea06471de937cc452a75de555a48be7007 100644
--- a/content/3.defense-systems/gasdermin.md
+++ b/content/3.defense-systems/gasdermin.md
@@ -39,32 +39,12 @@ The GasderMIN system in *Flavobacterium johnsoniae* (GCF_000016645.1, NC_009441)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the GasderMIN is detected in 27 genomes (0.12 %).
-
-The system was detected in 26 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the GasderMIN system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### GasderMIN
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /gasdermin/GasderMIN__bGSDM.cif
- - /gasdermin/GasderMIN__Protease1.cif
- - /gasdermin/GasderMIN__Protease2.cif
- - /gasdermin/GasderMIN__ATPase.cif
- - /gasdermin/GasderMIN__Protease.cif
- - /gasdermin/GasderMIN__bGSDM1.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/hachiman.md b/content/3.defense-systems/hachiman.md
index 275b71106e29d23631aedb52bcef9ae29b009a0b..120f3e1fd79281a1adbb779e9d44582138b58a77 100644
--- a/content/3.defense-systems/hachiman.md
+++ b/content/3.defense-systems/hachiman.md
@@ -38,28 +38,12 @@ The Hachiman system in *Vibrio metschnikovii* (GCF_009763925.1, NZ_CP046822) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Hachiman is detected in 1256 genomes (5.51 %).
-
-The system was detected in 541 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Hachiman system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Hachiman
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /hachiman/Hachiman.Hachiman__HamB.0.V.cif
- - /hachiman/Hachiman.Hachiman__HamA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/hna.md b/content/3.defense-systems/hna.md
index d45fc91ef1184f6abcf9a0af5062b0c2eeab291a..4a1558eb4a1c85aa108ec6e3f03bb684a93ecfc1 100644
--- a/content/3.defense-systems/hna.md
+++ b/content/3.defense-systems/hna.md
@@ -27,27 +27,12 @@ The Hna system in *Aggregatimonas sangjinii* (GCF_005943945.1, NZ_CP040710) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Hna is detected in 493 genomes (2.16 %).
-
-The system was detected in 305 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Hna system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Hna
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /hna/Hna__Hna.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/isg15-like.md b/content/3.defense-systems/isg15-like.md
index 083a59c00b102b0aeed91ae00f8d47558dabb67c..350a3656a5977efb3a4909c34038a3f3aeb5cb92 100644
--- a/content/3.defense-systems/isg15-like.md
+++ b/content/3.defense-systems/isg15-like.md
@@ -39,30 +39,12 @@ The ISG15-like system in *Caulobacter segnis* (GCF_023935105.1, NZ_CP096040) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the ISG15-like is detected in 43 genomes (0.19 %).
-
-The system was detected in 39 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the ISG15-like system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### ISG15-like
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /isg15-like/ISG15-like.ISG15-like__BilD.3.V.cif
- - /isg15-like/ISG15-like.ISG15-like__BilC.2.V.cif
- - /isg15-like/ISG15-like.ISG15-like__BilB.4.V.cif
- - /isg15-like/ISG15-like.ISG15-like__BilA.2.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/jukab.md b/content/3.defense-systems/jukab.md
index 95d1c407f54d381269294e91df97da5eaeb21445..a8f42124b920fac886dd89a6b7c5d5abce2d1b68 100644
--- a/content/3.defense-systems/jukab.md
+++ b/content/3.defense-systems/jukab.md
@@ -40,28 +40,12 @@ The JukAB system in *Kosakonia oryzae* (GCF_020544365.1, NZ_CP065358) is compose
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the JukAB is detected in 133 genomes (0.58 %).
-
-The system was detected in 50 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the JukAB system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### JukAB
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /jukab/JukAB__JukB.cif
- - /jukab/JukAB__JukA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/kiwa.md b/content/3.defense-systems/kiwa.md
index 21d26d741035adc869bbbd210f5517a64bb2d4a8..2c9cfa5e6c12058dea71338b85be6c98adddafa9 100644
--- a/content/3.defense-systems/kiwa.md
+++ b/content/3.defense-systems/kiwa.md
@@ -38,28 +38,12 @@ The Kiwa system in *Dickeya zeae* (GCF_019464635.1, NZ_CP040817) is composed of
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Kiwa is detected in 1095 genomes (4.8 %).
-
-The system was detected in 382 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Kiwa system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Kiwa
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /kiwa/Kiwa.Kiwa__KwaB.0.V.cif
- - /kiwa/Kiwa.Kiwa__KwaA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/lamassu-fam.md b/content/3.defense-systems/lamassu-fam.md
index e1820da0f83c0c28bc0065b4ee6646aa1b2160be..b1f5229bf97e79a13f61ea5d656761475e05064f 100644
--- a/content/3.defense-systems/lamassu-fam.md
+++ b/content/3.defense-systems/lamassu-fam.md
@@ -87,148 +87,12 @@ The Lamassu-Sir2 system in *Enterococcus faecalis* (GCF_023375525.1, NZ_CP091235
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Lamassu-Fam is detected in 2867 genomes (12.57 %).
-
-The system was detected in 1220 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Lamassu-Fam system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Lamassu-Amidase
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Amidase.Lamassu-Fam__LmuA_effector_Amidase.0.DF.cif
- - /lamassu-fam/Lamassu-Amidase.Lamassu-Fam__LmuB_SMC_Amidase.0.DF.cif
-
----
-::
-### Lamassu-Cap4_nuclease
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuA_effector_Cap4_nuclease_II.0.DF.cif
- - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuC_acc_Cap4_nuclease.0.DF.cif
- - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuB_SMC_Cap4_nuclease_II.0.DF.cif
-
----
-::
-##### Example 2
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuA_effector_Cap4_nuclease.1.DF.cif
- - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam_undetected_LmuC.1.DF.cif
- - /lamassu-fam/Lamassu-Cap4_nuclease.Lamassu-Fam__LmuB_SMC_Cap4_nuclease.1.DF.cif
-
----
-::
-### Lamassu-FMO
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuB_SMC_FMO.0.DF.cif
- - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuC_acc_FMO.0.DF.cif
- - /lamassu-fam/Lamassu-FMO.Lamassu-Fam__LmuA_effector_FMO.0.DF.cif
-
----
-::
-### Lamassu-Fam_Hydrolase_Protease
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuA_effector_Hydrolase.0.V.cif
- - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuA_effector_Protease.0.V.cif
- - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuC_acc_hydrolase_protease.0.V.cif
- - /lamassu-fam/Lamassu-Fam_Hydrolase_Protease.Lamassu-Fam__LmuB_SMC_Hydrolase_protease.0.V.cif
-
----
-::
-### Lamassu-Fam_Mrr
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuA_effector_Mrr.0.V.cif
- - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuC_acc_Mrr.0.V.cif
- - /lamassu-fam/Lamassu-Fam_Mrr.Lamassu-Fam__LmuB_SMC_Mrr.0.V.cif
-
----
-::
-### Lamassu-Fam_PDDEXK
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuA_effector_PDDEXK.0.V.cif
- - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuB_SMC_PDDEXK.0.V.cif
- - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuC_acc_PDDEXK.0.V.cif
- - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuC_acc_PDDEXK.0.V.cif
- - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuB_SMC_PDDEXK.0.V.cif
- - /lamassu-fam/Lamassu-Fam_PDDEXK.Lamassu-Fam__LmuA_effector_PDDEXK.0.V.cif
-
----
+::article-system-distribution-plot
::
-### Lamassu-Hypothetical
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuB_SMC_hypothetical.0.DF.cif
- - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuC_acc_hypothetical.0.DF.cif
- - /lamassu-fam/Lamassu-Hypothetical.Lamassu-Fam__LmuA_effector_hypothetical.0.DF.cif
-
----
-::
-### Lamassu-Lipase
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuB_SMC_Lipase.0.DF.cif
- - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuC_acc_Lipase.0.DF.cif
- - /lamassu-fam/Lamassu-Lipase.Lamassu-Fam__LmuA_effector_Lipase.0.DF.cif
-
----
-::
-### Lamassu-Sir2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuB_SMC_Sir2.0.DF.cif
- - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuC_acc_Sir2.0.DF.cif
- - /lamassu-fam/Lamassu-Sir2.Lamassu-Fam__LmuA_effector_Sir2.0.DF.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/lit.md b/content/3.defense-systems/lit.md
index f1acccaae6bebe4e74ce6cfe0ec2f96441ca6612..c25978c9b85b3adf6b9a293b34172d4d3597890a 100644
--- a/content/3.defense-systems/lit.md
+++ b/content/3.defense-systems/lit.md
@@ -42,27 +42,12 @@ The Lit system in *Klebsiella pneumoniae* (GCF_002180175.1, NZ_CP021686) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Lit is detected in 222 genomes (0.97 %).
-
-The system was detected in 78 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Lit system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Lit
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /lit/Lit__Lit.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/mads.md b/content/3.defense-systems/mads.md
index 601be4c1e56339c6cf4397319722da15bc695c32..543a3d44a493d962444e4b62d6a17526540c8693 100644
--- a/content/3.defense-systems/mads.md
+++ b/content/3.defense-systems/mads.md
@@ -27,33 +27,12 @@ The MADS system in *Pseudomonas otitidis* (GCF_019879085.1, NZ_CP082244) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the MADS is detected in 72 genomes (0.32 %).
-
-The system was detected in 63 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the MADS system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### MADS
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /mads/MADS__mad8.cif
- - /mads/MADS__mad7.cif
- - /mads/MADS__mad4.cif
- - /mads/MADS__mad3.cif
- - /mads/MADS__mad1.cif
- - /mads/MADS__mad5.cif
- - /mads/MADS__mad2.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/mazef.md b/content/3.defense-systems/mazef.md
index fd6933201205865a055752a6878afb160a00d073..b6344a9477d82e366e4edbfda8d9ad6867d6ab8d 100644
--- a/content/3.defense-systems/mazef.md
+++ b/content/3.defense-systems/mazef.md
@@ -27,18 +27,12 @@ The MazEF system in *Pantoea vagans* (GCF_004792415.1, NZ_CP038853) is composed
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the MazEF is detected in 4457 genomes (19.55 %).
-
-The system was detected in 993 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the MazEF system for the 14 phyla with more than 50 genomes in the RefSeq database.
+::article-system-distribution-plot
+::
-## Structure
+## Structure
-::info
-This section is empty
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/menshen.md b/content/3.defense-systems/menshen.md
index 32158af193de71b8050ad49df88e468139eb8dcd..859cdc0c7d0931408a4c554962940650188b6153 100644
--- a/content/3.defense-systems/menshen.md
+++ b/content/3.defense-systems/menshen.md
@@ -38,29 +38,12 @@ The Menshen system in *Streptomyces marincola* (GCF_020410765.1, NZ_CP084541) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Menshen is detected in 430 genomes (1.89 %).
-
-The system was detected in 263 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Menshen system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Menshen
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /menshen/Menshen.Menshen__NsnA.0.V.cif
- - /menshen/Menshen.Menshen__NsnB.0.V.cif
- - /menshen/Menshen.Menshen__NsnC.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/mmb_gp29_gp30.md b/content/3.defense-systems/mmb_gp29_gp30.md
index edef2f74a8ffb05a823f07b3f6687b40cf05eead..1cd88198ff1598f009264583375c0fcaced4b6e0 100644
--- a/content/3.defense-systems/mmb_gp29_gp30.md
+++ b/content/3.defense-systems/mmb_gp29_gp30.md
@@ -32,28 +32,12 @@ The MMB_gp29_gp30 system in *Mycolicibacterium insubricum* (GCF_010731615.1, NZ_
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the MMB_gp29_gp30 is detected in 5 genomes (0.02 %).
-
-The system was detected in 4 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the MMB_gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### MMB_gp29_gp30
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /mmb_gp29_gp30/MMB_gp29_gp30__gp29.cif
- - /mmb_gp29_gp30/MMB_gp29_gp30__gp30.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/mok_hok_sok.md b/content/3.defense-systems/mok_hok_sok.md
index 4dbdd5f4eeaca3ac4d53bd2444067ceae6eec696..1ab0df71e215b60b90b0fff6cbca8dc7b85e32b9 100644
--- a/content/3.defense-systems/mok_hok_sok.md
+++ b/content/3.defense-systems/mok_hok_sok.md
@@ -42,27 +42,12 @@ The Mok_Hok_Sok system in *Escherichia fergusonii* (GCF_013819565.1, NZ_CP057221
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Mok_Hok_Sok is detected in 1656 genomes (7.26 %).
-
-The system was detected in 83 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Mok_Hok_Sok
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /mok_hok_sok/Mok_Hok_Sok__Hok.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/mokosh.md b/content/3.defense-systems/mokosh.md
index 57e54f978d78db314eb60d846248ab65b94485c1..85bc22ec340c34e966cac620e4276bbec4e3fd99 100644
--- a/content/3.defense-systems/mokosh.md
+++ b/content/3.defense-systems/mokosh.md
@@ -57,48 +57,12 @@ The Mokosh_Type_I_E system in *Planococcus faecalis* (GCF_002009235.1, NZ_CP0194
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Mokosh is detected in 1607 genomes (7.05 %).
-
-The system was detected in 577 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Mokosh system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Mokosh_TypeI
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
-
----
+::article-system-distribution-plot
::
-##### Example 2
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /mokosh/Mokosh_TypeI.Mokosh_TypeI__MkoB.0.V.cif
----
-::
-### Mokosh_TypeII
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /mokosh/Mokosh_TypeII__MkoC.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/mqsrac.md b/content/3.defense-systems/mqsrac.md
index 7342d996f0afee70abf9afe6d23a45a6e39b7652..58100de33ed8a1ba89c1b9cc20c44ba67662711b 100644
--- a/content/3.defense-systems/mqsrac.md
+++ b/content/3.defense-systems/mqsrac.md
@@ -35,17 +35,14 @@ The MqsRAC system in *Shigella dysenteriae* (GCF_002949935.1, NZ_CP026827) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the MqsRAC is detected in 26 genomes (0.11 %).
-
-The system was detected in 20 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the MqsRAC system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
+::article-system-distribution-plot
+::
## Structure
+::article-structure
+::
+
## Experimental validation
<mermaid>
graph LR;
diff --git a/content/3.defense-systems/nhi.md b/content/3.defense-systems/nhi.md
index cc0f4a95df6f29eda83da255e8a0537b814b8638..92f4798cc921570d29a9de4f27877a4716f42429 100644
--- a/content/3.defense-systems/nhi.md
+++ b/content/3.defense-systems/nhi.md
@@ -39,27 +39,12 @@ The Nhi system in *Staphylococcus sp. MZ9* (GCF_018622975.1, NZ_CP076029) is com
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Nhi is detected in 199 genomes (0.87 %).
-
-The system was detected in 61 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Nhi
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /nhi/Nhi__Nhi.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/nixi.md b/content/3.defense-systems/nixi.md
index 697c4e6c3d3e8b8b26a2bb2589cb0982f94019f1..a743f907ca51071244bd7c49cae7cff63c82d464 100644
--- a/content/3.defense-systems/nixi.md
+++ b/content/3.defense-systems/nixi.md
@@ -34,27 +34,12 @@ The NixI system in *Apilactobacillus kunkeei* (GCF_001314945.1, NZ_CP012920) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the NixI is detected in 8 genomes (0.04 %).
-
-The system was detected in 5 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the NixI system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### NixI
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /nixi/NixI__NixI.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/nlr.md b/content/3.defense-systems/nlr.md
index fbe157b73b3a76be889482f2bd819240396e02c6..b337599c207356ae0f987aa6bc53627448e08718 100644
--- a/content/3.defense-systems/nlr.md
+++ b/content/3.defense-systems/nlr.md
@@ -46,38 +46,12 @@ The NLR_like_bNACHT09 system in *Parabacteroides johnsonii* (GCF_020735865.1, NZ
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the NLR is detected in 453 genomes (1.99 %).
-
-The system was detected in 205 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### NLR_like_bNACHT01
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01.cif
-
----
+::article-system-distribution-plot
::
-### NLR_like_bNACHT09
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/old_exonuclease.md b/content/3.defense-systems/old_exonuclease.md
index 23beca38eca6f2864fd7f70941aee13e1643d11b..2ec1786f34059069fa21efedc0df38e6bcbef6ed 100644
--- a/content/3.defense-systems/old_exonuclease.md
+++ b/content/3.defense-systems/old_exonuclease.md
@@ -37,27 +37,12 @@ The Old_exonuclease system in *Shewanella xiamenensis* (GCF_022453805.1, NZ_CP09
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Old_exonuclease is detected in 102 genomes (0.45 %).
-
-The system was detected in 56 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Old_exonuclease system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Old_exonuclease
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /old_exonuclease/Old_exonuclease__Old_exonuclease.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/olokun.md b/content/3.defense-systems/olokun.md
index 2ddd20926153e679daf1228bfd1935b36a8d52db..6da78a290e20a60ca864d1ed79cf72b7a8235fe9 100644
--- a/content/3.defense-systems/olokun.md
+++ b/content/3.defense-systems/olokun.md
@@ -43,28 +43,12 @@ The Olokun system in *Klebsiella quasipneumoniae* (GCF_015286025.1, NZ_CP063902)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Olokun is detected in 242 genomes (1.06 %).
-
-The system was detected in 137 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Olokun system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Olokun
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /olokun/Olokun.Olokun__OloA.0.V.cif
- - /olokun/Olokun.Olokun__OloB.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pago.md b/content/3.defense-systems/pago.md
index 5f012c98725e43e3942fb79722f9bdf72237fb2d..f39d06cdf16201818551c8aed76ef2d64aeb89f0 100644
--- a/content/3.defense-systems/pago.md
+++ b/content/3.defense-systems/pago.md
@@ -89,37 +89,12 @@ The pAgo_SPARTA system in *Roseivivax sp. THAF30* (GCF_009363575.1, NZ_CP045389)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the pAgo is detected in 575 genomes (2.52 %).
-
-The system was detected in 464 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### pAgo
-
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pago/pAgo__pAgo_LongA.cif
- - /pago/pAgo__pAgo_LongB.cif
- - /pago/pAgo__pAgo_S1A.cif
- - /pago/pAgo__SIR2APAZ.cif
- - /pago/pAgo__pAgo_S1B.cif
- - /pago/pAgo__XAPAZ.cif
- - /pago/pAgo__pAgo_S2B.cif
- - /pago/pAgo__TIRAPAZ.cif
- - /pago/pAgo__pAgo_SPARTA.cif
-
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/panchino_gp28.md b/content/3.defense-systems/panchino_gp28.md
index 5600bdc42487077ca41c5599b085a79756279e8d..aa2a29f7855c3a38f7481a9af39339cf4ee75931 100644
--- a/content/3.defense-systems/panchino_gp28.md
+++ b/content/3.defense-systems/panchino_gp28.md
@@ -35,27 +35,12 @@ The Panchino_gp28 system in *Burkholderia pseudomallei* (GCF_018228585.1, NZ_CP0
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Panchino_gp28 is detected in 16 genomes (0.07 %).
-
-The system was detected in 5 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Panchino_gp28 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Panchino_gp28
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /panchino_gp28/Panchino_gp28__gp28.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/paris.md b/content/3.defense-systems/paris.md
index a09b72fca555cde404bc032bccbf8a9fd83f9ce0..61fa56b5f96a1408c6ad09582b817c02c9db998c 100644
--- a/content/3.defense-systems/paris.md
+++ b/content/3.defense-systems/paris.md
@@ -42,62 +42,12 @@ The PARIS_I_merge system in *Rhizobium sp. SL42* (GCF_021729845.1, NZ_CP063397)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Paris is detected in 1128 genomes (4.95 %).
-
-The system was detected in 518 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Paris system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### PARIS_I
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /paris/PARIS_I.PARIS_I__AAA_15.0.V.cif
- - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
-
----
-::
-### PARIS_II
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /paris/PARIS_I.Rst_PARIS__DUF4435.0.V.cif
- - /paris/PARIS_II.PARIS_II__AAA_21.0.V.cif
-
----
-::
-### PARIS_II_merge
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /paris/PARIS_II_merge__AAA_21_DUF4435.cif
-
----
+::article-system-distribution-plot
::
-### PARIS_I_merge
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /paris/PARIS_I_merge__AAA_15_DUF4435.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-lambda-1.md b/content/3.defense-systems/pd-lambda-1.md
index 15d14dfda7ad0fea9b4cb6efcccdae204c961c09..243239750c84fabdb354a509d5304fd059b0b820 100644
--- a/content/3.defense-systems/pd-lambda-1.md
+++ b/content/3.defense-systems/pd-lambda-1.md
@@ -39,27 +39,12 @@ The PD-Lambda-1 system in *Gemmata massiliana* (GCF_901538265.1, NZ_LR593886) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-Lambda-1 is detected in 1301 genomes (5.71 %).
-
-The system was detected in 483 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-Lambda-1
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-lambda-1/PD-Lambda-1__PD-Lambda-1.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-lambda-2.md b/content/3.defense-systems/pd-lambda-2.md
index 7889243fd6a9f90fb87da5eb775aae8f43a55004..9176510602e8f1c17cd307cf86a435c8ad630025 100644
--- a/content/3.defense-systems/pd-lambda-2.md
+++ b/content/3.defense-systems/pd-lambda-2.md
@@ -27,29 +27,12 @@ The PD-Lambda-2 system in *Vibrio parahaemolyticus* (GCF_013393845.1, NZ_CP04010
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-Lambda-2 is detected in 122 genomes (0.54 %).
-
-The system was detected in 59 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-Lambda-2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_C.0.V.cif
- - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_B.0.V.cif
- - /pd-lambda-2/PD-Lambda-2.PD-Lambda-2__PD-Lambda-2_A.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-lambda-3.md b/content/3.defense-systems/pd-lambda-3.md
index 2b8b0dc3d94845a6a0673523efc1ad51ec2b2a97..19a00337155481de2dbbbfb86bb4bd0c85d53a38 100644
--- a/content/3.defense-systems/pd-lambda-3.md
+++ b/content/3.defense-systems/pd-lambda-3.md
@@ -36,29 +36,12 @@ The PD-Lambda-3 system in *Enterobacter sp. CRENT-193* (GCF_002787395.1, NZ_CP02
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-Lambda-3 is detected in 72 genomes (0.32 %).
-
-The system was detected in 28 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-Lambda-3
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_A.0.V.cif
- - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_B.0.V.cif
- - /pd-lambda-3/PD-Lambda-3.PD-Lambda-3__PD-Lambda-3_C.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-lambda-4.md b/content/3.defense-systems/pd-lambda-4.md
index 0759b3d95a2a8589601bedc7f2dfd5d4be7ab140..bb155bd2065cedff887d54e37f0327f3f14e74de 100644
--- a/content/3.defense-systems/pd-lambda-4.md
+++ b/content/3.defense-systems/pd-lambda-4.md
@@ -26,28 +26,12 @@ The PD-Lambda-4 system in *Serratia sp. LS-1* (GCF_003719595.1, NZ_CP033504) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-Lambda-4 is detected in 69 genomes (0.3 %).
-
-The system was detected in 14 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-Lambda-4
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_B.0.V.cif
- - /pd-lambda-4/PD-Lambda-4.PD-Lambda-4__PD-Lambda-4_A.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-lambda-5.md b/content/3.defense-systems/pd-lambda-5.md
index c8c35d1ad495e271a60bcd39c5bd3b824ec5f70d..95b7256fd966f9c8c800b2250430e3ada2f287c0 100644
--- a/content/3.defense-systems/pd-lambda-5.md
+++ b/content/3.defense-systems/pd-lambda-5.md
@@ -35,28 +35,12 @@ The PD-Lambda-5 system in *Plantactinospora sp. BB1* (GCF_003030385.1, NZ_CP0281
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-Lambda-5 is detected in 286 genomes (1.25 %).
-
-The system was detected in 186 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-Lambda-5
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_A.0.V.cif
- - /pd-lambda-5/PD-Lambda-5.PD-Lambda-5__PD-Lambda-5_B.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-lambda-6.md b/content/3.defense-systems/pd-lambda-6.md
index bcd1ab8771d75b24d85352142f779afc4d9c97f8..26d88953a74b1f266799f6fae6630e061ed10a47 100644
--- a/content/3.defense-systems/pd-lambda-6.md
+++ b/content/3.defense-systems/pd-lambda-6.md
@@ -26,27 +26,12 @@ The PD-Lambda-6 system in *Enterobacter asburiae* (GCF_013782005.1, NZ_CP056126)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-Lambda-6 is detected in 20 genomes (0.09 %).
-
-The system was detected in 11 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-Lambda-6
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-lambda-6/PD-Lambda-6__PD-Lambda-6.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-1.md b/content/3.defense-systems/pd-t4-1.md
index b720c788a410abf012a6340ef0f04aa22fa7abb9..6f41e286fbd06b679b4911cc06e63b42b325a8d1 100644
--- a/content/3.defense-systems/pd-t4-1.md
+++ b/content/3.defense-systems/pd-t4-1.md
@@ -27,27 +27,12 @@ The PD-T4-1 system in *Macrococcus armenti* (GCF_020097055.1, NZ_CP083595) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-1 is detected in 209 genomes (0.92 %).
-
-The system was detected in 38 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-1
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-1/PD-T4-1__PD-T4-1.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-10.md b/content/3.defense-systems/pd-t4-10.md
index 2eaa1f3ced05af2f394c40740d66bdaf4142be91..ccd35fbb2117e5acd3ca81da06e54f836a2105e1 100644
--- a/content/3.defense-systems/pd-t4-10.md
+++ b/content/3.defense-systems/pd-t4-10.md
@@ -36,28 +36,12 @@ The PD-T4-10 system in *Escherichia fergusonii* (GCF_019047545.1, NZ_CP077242) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-10 is detected in 33 genomes (0.14 %).
-
-The system was detected in 23 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-10
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_B.0.V.cif
- - /pd-t4-10/PD-T4-10.PD-T4-10__PD-T4-10_A.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-2.md b/content/3.defense-systems/pd-t4-2.md
index c4abdd50222c62369de5eb138e32f0f1dbdfbedd..bf7543883b22c0e3352b5185903be66b3f93bf59 100644
--- a/content/3.defense-systems/pd-t4-2.md
+++ b/content/3.defense-systems/pd-t4-2.md
@@ -27,28 +27,12 @@ The PD-T4-2 system in *Jeotgalibaca sp. PTS2502* (GCF_001975685.1, NZ_CP019433)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-2 is detected in 33 genomes (0.14 %).
-
-The system was detected in 28 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_A.0.DF.cif
- - /pd-t4-2/PD-T4-2.PD-T4-2__PD-T4-2_B.0.DF.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-3.md b/content/3.defense-systems/pd-t4-3.md
index d4b6592a6ae28dbdb738e976bc57d5be1b78c1b9..b06be077a5902f53a9b43c1ab7b25be4d5f67a12 100644
--- a/content/3.defense-systems/pd-t4-3.md
+++ b/content/3.defense-systems/pd-t4-3.md
@@ -37,27 +37,12 @@ The PD-T4-3 system in *Morganella morganii* (GCF_018802485.1, NZ_CP064826) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-3 is detected in 1314 genomes (5.76 %).
-
-The system was detected in 172 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-3
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-3/PD-T4-3__PD-T4-3.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-4.md b/content/3.defense-systems/pd-t4-4.md
index 3fe34c40846aa0486c8cce02be4563b5310f9642..79b5044c36afaf3250d636fb63b546a454d7c4db 100644
--- a/content/3.defense-systems/pd-t4-4.md
+++ b/content/3.defense-systems/pd-t4-4.md
@@ -35,28 +35,12 @@ The PD-T4-4 system in *Thiothrix subterranea* (GCF_016772315.1, NZ_CP053482) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-4 is detected in 50 genomes (0.22 %).
-
-The system was detected in 37 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-4
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-4/PD-T4-4.PD-T4-4__PD-T4-4_B.0.V.cif
- - /pd-t4-4/PD-T4-4.PD-T4-4__PD-T4-4_A.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-5.md b/content/3.defense-systems/pd-t4-5.md
index 920b09c2a3babefa85942be3da8c4538b227e6d6..adf8cc4a8ba18ca29f86558cc56f585171a5164d 100644
--- a/content/3.defense-systems/pd-t4-5.md
+++ b/content/3.defense-systems/pd-t4-5.md
@@ -27,27 +27,12 @@ The PD-T4-5 system in *Grimontia hollisae* (GCF_009665295.1, NZ_CP035690) is com
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-5 is detected in 587 genomes (2.57 %).
-
-The system was detected in 128 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-5
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-5/PD-T4-5__PD-T4-5.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-6.md b/content/3.defense-systems/pd-t4-6.md
index da6dc01aa686fd58b0faa7ae6eb0c1ebbe003aa7..146114650fefb9390331662354031e20a71951b1 100644
--- a/content/3.defense-systems/pd-t4-6.md
+++ b/content/3.defense-systems/pd-t4-6.md
@@ -36,27 +36,12 @@ The PD-T4-6 system in *Streptococcus ruminantium* (GCF_021654555.1, NZ_AP025333)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-6 is detected in 88 genomes (0.39 %).
-
-The system was detected in 18 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-6
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-6/PD-T4-6__PD-T4-6.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-7.md b/content/3.defense-systems/pd-t4-7.md
index 8c174abd462967e77055925224aba0c93bcdba2f..74ee8bbc40a7f3eaea23ee516cc3e0ef3a33fca5 100644
--- a/content/3.defense-systems/pd-t4-7.md
+++ b/content/3.defense-systems/pd-t4-7.md
@@ -38,27 +38,12 @@ The PD-T4-7 system in *Thalassospira sp. B30-1* (GCF_015767575.1, NZ_CP065232) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-7 is detected in 155 genomes (0.68 %).
-
-The system was detected in 100 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-7 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-7
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-7/PD-T4-7__PD-T4-7.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-8.md b/content/3.defense-systems/pd-t4-8.md
index cfdf7c6c17d4d5d7f2a00e6f5866fe2b1e5832c8..bada1bc85e4d09eb5b7a94ad4e614c2396d22eec 100644
--- a/content/3.defense-systems/pd-t4-8.md
+++ b/content/3.defense-systems/pd-t4-8.md
@@ -36,27 +36,12 @@ The PD-T4-8 system in *Algoriphagus sp. Y33* (GCF_014838715.1, NZ_CP061947) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-8 is detected in 89 genomes (0.39 %).
-
-The system was detected in 50 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-8 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-8
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-8/PD-T4-8__PD-T4-8.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t4-9.md b/content/3.defense-systems/pd-t4-9.md
index 5ed10b969a2d1298f74321ae38d022e44ad62a53..92c47f1aedc206eac409b0a1bddf2a7b1f09e102 100644
--- a/content/3.defense-systems/pd-t4-9.md
+++ b/content/3.defense-systems/pd-t4-9.md
@@ -27,29 +27,12 @@ The PD-T4-9 system in *Vibrio parahaemolyticus* (GCF_001700835.1, NZ_CP010883) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T4-9 is detected in 141 genomes (0.62 %).
-
-The system was detected in 88 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T4-9 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T4-9
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_A.0.V.cif
- - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_B.0.V.cif
- - /pd-t4-9/PD-T4-9.PD-T4-9__PD-T4-9_C.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t7-1.md b/content/3.defense-systems/pd-t7-1.md
index 00c6122013f4ec1bfc59b8dd4cfee4fdf10b59f7..88fde3e3153f7b3da2cd9d4ea110bae1df77ed86 100644
--- a/content/3.defense-systems/pd-t7-1.md
+++ b/content/3.defense-systems/pd-t7-1.md
@@ -35,27 +35,12 @@ The PD-T7-1 system in *Klebsiella sp. P1927* (GCF_018204675.1, NZ_CP073377) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T7-1 is detected in 748 genomes (3.28 %).
-
-The system was detected in 146 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T7-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T7-1
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t7-1/PD-T7-1__PD-T7-1.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t7-2.md b/content/3.defense-systems/pd-t7-2.md
index 614e71237173f40a8e7c4d3cab53372f6aa57ebd..a44c97061e0748e8052ea746edb2df5e3a62dccd 100644
--- a/content/3.defense-systems/pd-t7-2.md
+++ b/content/3.defense-systems/pd-t7-2.md
@@ -27,28 +27,12 @@ The PD-T7-2 system in *Lederbergia lenta* (GCF_900478165.1, NZ_LS483476) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T7-2 is detected in 1483 genomes (6.5 %).
-
-The system was detected in 667 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T7-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T7-2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t7-2/PD-T7-2.PD-T7-2__PD-T7-2_B.0.V.cif
- - /pd-t7-2/PD-T7-2.PD-T7-2__PD-T7-2_A.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t7-3.md b/content/3.defense-systems/pd-t7-3.md
index 7ab9e5264482aad4a4f20ac6f8a87044ed6e5256..c85b2b0e1fdbf5308899ef26255acac986c29f90 100644
--- a/content/3.defense-systems/pd-t7-3.md
+++ b/content/3.defense-systems/pd-t7-3.md
@@ -36,27 +36,12 @@ The PD-T7-3 system in *Paraglaciecola psychrophila* (GCF_000347635.1, NC_020514)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T7-3 is detected in 209 genomes (0.92 %).
-
-The system was detected in 130 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T7-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T7-3
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t7-3/PD-T7-3__PD-T7-3.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t7-4.md b/content/3.defense-systems/pd-t7-4.md
index 06321a931276f2ce6961f8a07cd8e4ceaad35480..2bee176a7076a2042a8b88af6a451a5574cf2404 100644
--- a/content/3.defense-systems/pd-t7-4.md
+++ b/content/3.defense-systems/pd-t7-4.md
@@ -27,27 +27,12 @@ The PD-T7-4 system in *Salinibacterium hongtaonis* (GCF_003065485.1, NZ_CP026951
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T7-4 is detected in 492 genomes (2.16 %).
-
-The system was detected in 218 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T7-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T7-4
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t7-4/PD-T7-4__PD-T7-4.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pd-t7-5.md b/content/3.defense-systems/pd-t7-5.md
index 7fd1bf8fd0400235a11fcd7b5f5d7c3e0022982f..a4f19749f919f82cd2a39c550861fb2cf225de22 100644
--- a/content/3.defense-systems/pd-t7-5.md
+++ b/content/3.defense-systems/pd-t7-5.md
@@ -34,27 +34,12 @@ The PD-T7-5 system in *Shewanella putrefaciens* (GCF_019599085.1, NZ_CP080633) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PD-T7-5 is detected in 336 genomes (1.47 %).
-
-The system was detected in 129 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PD-T7-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PD-T7-5
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pd-t7-5/PD-T7-5__PD-T7-5.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pfiat.md b/content/3.defense-systems/pfiat.md
index 7cd97f602a8eab62147ac153c2c7505a0cd0e10b..18875aba1c67c452a419c6b3817f624bc0c9eaa6 100644
--- a/content/3.defense-systems/pfiat.md
+++ b/content/3.defense-systems/pfiat.md
@@ -50,33 +50,12 @@ The PfiAT system in *Desulfoscipio gibsoniae* (GCF_000233715.2, NC_021184) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PfiAT is detected in 819 genomes (3.59 %).
-Among the 22,803 complete genomes of RefSeq, the PfiAT is detected in 819 genomes (3.59 %).
-
-The system was detected in 308 different species.
-The system was detected in 308 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PfiAT system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-Proportion of genome encoding the PfiAT system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PfiAT
-##### Example 1
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pfiat/PfiAT.PfiAT__PfiA.0.V.cif
- - /pfiat/PfiAT.PfiAT__PfiT.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/phrann_gp29_gp30.md b/content/3.defense-systems/phrann_gp29_gp30.md
index d604dfb0c90d3c9461a08ec446debfbd932c07e1..f2cea4f771d42d1919948733b5e002bbb6d5b7a0 100644
--- a/content/3.defense-systems/phrann_gp29_gp30.md
+++ b/content/3.defense-systems/phrann_gp29_gp30.md
@@ -23,18 +23,12 @@ The Phrann_gp29_gp30 system in *Demequina sp. TMPB413* (GCF_020447105.2, NZ_CP09
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Phrann_gp29_gp30 is detected in 312 genomes (1.37 %).
-
-The system was detected in 35 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Phrann_gp29_gp30 system for the 14 phyla with more than 50 genomes in the RefSeq database.
+::article-system-distribution-plot
+::
## Structure
-::info
-This section is empty
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pif.md b/content/3.defense-systems/pif.md
index c7486c9bd715e4a92a71b26adc84761c16218b50..bf2977abc259fc0d12cbf63320d19cd6a9de7460 100644
--- a/content/3.defense-systems/pif.md
+++ b/content/3.defense-systems/pif.md
@@ -41,28 +41,12 @@ The Pif system in *Shigella flexneri* (GCF_022353545.1, NZ_CP055168) is composed
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Pif is detected in 140 genomes (0.61 %).
-
-The system was detected in 25 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Pif system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Pif
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pif/Pif.Pif__PifA.0.V.cif
- - /pif/Pif.Pif__PifC.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/prrc.md b/content/3.defense-systems/prrc.md
index 7fe3c82653313edca174235db5642fc008d9f5a0..6b8a5d2a12b397a2065fa46e4253cc5aec8e1f85 100644
--- a/content/3.defense-systems/prrc.md
+++ b/content/3.defense-systems/prrc.md
@@ -41,40 +41,12 @@ The PrrC system in *Parazoarcus communis* (GCF_003111645.1, NZ_CP022187) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PrrC is detected in 705 genomes (3.09 %).
-
-The system was detected in 309 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PrrC system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### PrrC
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /prrc/PrrC__EcoprrI.cif
- - /prrc/PrrC__PrrC.cif
-
----
+::article-system-distribution-plot
::
-### RM
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /prrc/RM__Type_I_S.cif
- - /prrc/RM__Type_I_REases.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/psyrta.md b/content/3.defense-systems/psyrta.md
index b0bdf27c3fe3717c424c4e2bae97076bf8c39bb7..832f4a29a2add507928437bead226981ab837ec0 100644
--- a/content/3.defense-systems/psyrta.md
+++ b/content/3.defense-systems/psyrta.md
@@ -57,28 +57,12 @@ The PsyrTA system in *Providencia rettgeri* (GCF_013702265.1, NZ_CP059348) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the PsyrTA is detected in 629 genomes (2.76 %).
-
-The system was detected in 132 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the PsyrTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### PsyrTA
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /psyrta/PsyrTA.PsyrTA__PsyrT.0.V.cif
- - /psyrta/PsyrTA.PsyrTA__PsyrA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/pycsar.md b/content/3.defense-systems/pycsar.md
index 1cd9084bef8607b47b121435a3521615f51d0aca..038c398246a511a3c436b3d79aad17f0e31f3eb1 100644
--- a/content/3.defense-systems/pycsar.md
+++ b/content/3.defense-systems/pycsar.md
@@ -46,52 +46,12 @@ The Pycsar system in *Nocardioides sambongensis* (GCF_006494815.1, NZ_CP041091)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Pycsar is detected in 552 genomes (2.42 %).
-
-The system was detected in 295 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Pycsar system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-
-### Experimentaly determined structure
-From :ref{doi=10.1016/j.cell.2021.09.031} in *Burkholderia cepacia* LK29:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pycsar/7r65-assembly1_Cyclase_2mer.cif
----
+::article-system-distribution-plot
::
+## Structure
-### Pycsar
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pycsar/Pycsar.Pycsar__AG_cyclase.1.V.cif
- - /pycsar/Pycsar.CBASS__TIR.0.V.cif
-
----
-::
-##### Example 2
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /pycsar/Pycsar.CBASS_TM.1.V.cif
- - /pycsar/Pycsar.Pycsar__AG_cyclase.1.V.cif
-
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/radar.md b/content/3.defense-systems/radar.md
index 026774951311807f47c07ce57e127b8968face49..1b0d5ca9d0a6ca66f00ba7af0a79946f0eb2fc87 100644
--- a/content/3.defense-systems/radar.md
+++ b/content/3.defense-systems/radar.md
@@ -44,82 +44,12 @@ The radar_II system in *Enterobacter sp. JH25* (GCF_021725435.1, NZ_CP091319) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the RADAR is detected in 135 genomes (0.59 %).
-
-The system was detected in 44 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the RADAR system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-
-### Experimentally determined structure
-
-From :ref{doi=10.1016/j.cell.2023.01.012} in *Escherichia coli*:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /radar/8fnt_EcRdrA_7mer.pdb
- - /radar/8fnv_EcRdrB_12mer.pdb
- - /radar/8fnw_EcRdrAB_7_12mer.cif
----
-::
-
-
-From :ref{doi=10.1016/j.cell.2023.01.012} in *Streptococcus suis*:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /radar/8fnu_SsRdrA_7mer.pdb
----
-::
-
-From :ref{doi=10.1016/j.cell.2023.01.026} in *Escherichia coli*:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /radar/8hr8_EcRdrA_7mer.pdb
- - /radar/8hr9_EcRdrA_14mer.pdb
- - /radar/8hrc_EcRdrB_12mer.pdb
- - /radar/8hr7_EcRdrAB_7_12mer.cif
- - /radar/8hra_EcRdrA_7mer_rna.pdb
- - /radar/8hrb_EcRdrA_14mer_rna.pdb
----
-::
-
-### radar_I
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /radar/radar_I.radar_I__rdrB_I.0.V.cif
- - /radar/radar_I.radar_I__rdrA_I.0.V.cif
-
----
+::article-system-distribution-plot
::
-### radar_II
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /radar/radar_II.radar_II__rdrC_II.0.V.cif
- - /radar/radar_II.radar_II__rdrB_II.0.V.cif
- - /radar/radar_II.radar_II__rdrA_II.0.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/retron.md b/content/3.defense-systems/retron.md
index 7bc29cfe10b17b35855bf07b527db11338e361d5..d3ed4756043eb21cd487cec1f295123af4e3dda2 100644
--- a/content/3.defense-systems/retron.md
+++ b/content/3.defense-systems/retron.md
@@ -114,148 +114,12 @@ The Retron_XIII system in *Clostridium saccharobutylicum* (GCF_002003365.1, NZ_C
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Retron is detected in 2537 genomes (11.13 %).
-
-The system was detected in 840 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Retron system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### RT_Ec67_SLATT
-##### Example Ec57
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/RT_Ec67_SLATT.AbiA__AbiA_small_SLATT.Ec57.V.cif
-
----
-::
-##### Example Ec67
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/DRT_3.DRT_3__drt3a.0.V.cif
-
----
-::
-### Retron_II
-##### Example Ec73
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_II.Retron_II__NDT.Ec73.V.cif
-
----
-::
-##### Example Ec86
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_II.Retron_II__NDT.Ec73.V.cif
-
----
-::
-### Retron_III
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_III.Retron_III__PRTase.0.DF.cif
- - /retron/Retron_III.Retron_III__WH.0.DF.cif
-
----
-::
-##### Example 2
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_III.Retron_III__PRTase_WH.1.DF.cif
-
----
-::
-### Retron_IV
-##### Example Ec48
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_IV.Retron_IV__2TM.Ec48.V.cif
-
----
-::
-### Retron_I_A
-##### Example Ec83
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_I_A.Retron__RT_Tot.Ec83.V.cif
- - /retron/Retron_I_A.Retron_I_A__ATPase_TypeIA.Vc95.V.cif
-
----
-::
-##### Example Vc95
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_I_A.Retron_I_A__ATPase_TypeIA.Vc95.V.cif
- - /retron/Retron_I_A.Retron__RT_Tot.Ec83.V.cif
-
----
-::
-### Retron_I_B
-##### Example Eco8
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_I_B.Retron_I_B__ATPase_TOPRIM_COG3593.Eco8.V.cif
-
----
+::article-system-distribution-plot
::
-### Retron_VI
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_VI.Retron_VI__HTH.0.DF.cif
- - /retron/Retron_VI.Possible_Retron_VI__SP.0.DF.cif
-
----
-::
-### Retron_VII_2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /retron/Retron_VII_2.Retron_VII_2__DUF3800.0.DF.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rexab.md b/content/3.defense-systems/rexab.md
index c2f0f8d3cc4d0acc4941786b430e0b3c6c0fb1f3..299844b558f4ea5d4fadfdf6ea33f5bb66ec7034 100644
--- a/content/3.defense-systems/rexab.md
+++ b/content/3.defense-systems/rexab.md
@@ -27,28 +27,12 @@ The RexAB system in *Klebsiella pneumoniae* (GCF_016780145.1, NZ_CP068798) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the RexAB is detected in 73 genomes (0.32 %).
-
-The system was detected in 18 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the RexAB system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### RexAB
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rexab/RexAB.RexAB_RexB.0.V.cif
- - /rexab/RexAB.RexAB_RexA.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rloc.md b/content/3.defense-systems/rloc.md
index 446ca90b8f504131309655a2218c37aaa4e9e84c..baf1f06e34e1ffb46495f8769d2f25d2bd36d363 100644
--- a/content/3.defense-systems/rloc.md
+++ b/content/3.defense-systems/rloc.md
@@ -41,27 +41,12 @@ The RloC system in *Pseudomonas aeruginosa* (GCF_000981825.1, NZ_CP011317) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the RloC is detected in 1944 genomes (8.53 %).
-
-The system was detected in 919 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the RloC system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### RloC
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rloc/RloC__RloC.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rm.md b/content/3.defense-systems/rm.md
index 2cb561dc6f022d59344393e5d55abbf55bbd6d93..a50ea0f5421f8b84a0a0c693536e78ac78393924 100644
--- a/content/3.defense-systems/rm.md
+++ b/content/3.defense-systems/rm.md
@@ -61,35 +61,12 @@ The RM_Type_IV system in *Halobaculum rubrum* (GCF_019880225.1, NZ_CP082284) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the RM is detected in 18264 genomes (80.09 %).
-
-The system was detected in 6137 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
::article-system-distribution-plot
::
## Structure
-### Experimentaly determined structure
-
-Many structure for the different types of restriction-modification system are available on the [Protein Data Bank](https://www.rcsb.org).
-
-### RM
-#### Restriction modification Type I Prr
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rm/RM__Type_I_REases-plddts_86.33796.pdb
- - /rm/RM__Type_I_S-plddts_91.98582.pdb
- - /prrc/PrrC__EcoprrI-plddts_91.30003.pdb
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rnlab.md b/content/3.defense-systems/rnlab.md
index 27394c82fc50136bbe60a6b7a53b57346aee0955..de724598a01cdc13303394cf5a912db14774ceec 100644
--- a/content/3.defense-systems/rnlab.md
+++ b/content/3.defense-systems/rnlab.md
@@ -38,28 +38,12 @@ The RnlAB system in *Bacteroides caecimuris* (GCF_001688725.2, NZ_CP015401) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the RnlAB is detected in 279 genomes (1.22 %).
-
-The system was detected in 68 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the RnlAB system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### RnlAB
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rnlab/RnlAB.RnlAB__RnlA.0.DF.cif
- - /rnlab/RnlAB.RnlAB__RnlB.0.DF.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rosmerta.md b/content/3.defense-systems/rosmerta.md
index 6d2af2a5b2aacca64cff7b3f6ad2818cc1a1d8d2..dfe5a5ac34734620e35d1aa2ac788218022a81f9 100644
--- a/content/3.defense-systems/rosmerta.md
+++ b/content/3.defense-systems/rosmerta.md
@@ -39,28 +39,12 @@ The RosmerTA system in *Paucibacter sp. KCTC 42545* (GCF_001477625.1, NZ_CP01369
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the RosmerTA is detected in 2080 genomes (9.12 %).
-
-The system was detected in 613 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the RosmerTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### RosmerTA
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rosmerta/RosmerTA.RosmerTA__RmrA.0.V.cif
- - /rosmerta/RosmerTA.RosmerTA__RmrT.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rst_2tm_1tm_tir.md b/content/3.defense-systems/rst_2tm_1tm_tir.md
index 7346d9f485ab545dee74b6a08f234133858299a3..cbcd331bf0b30cdfef417bcd07e6fe9d780e9104 100644
--- a/content/3.defense-systems/rst_2tm_1tm_tir.md
+++ b/content/3.defense-systems/rst_2tm_1tm_tir.md
@@ -39,28 +39,13 @@ The Rst_2TM_1TM_TIR system in *Escherichia coli* (GCF_004006575.1, NZ_CP034787)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_2TM_1TM_TIR is detected in 2 genomes (0.01 %).
-
-The system was detected in 1 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_2TM_1TM_TIR
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_2TM_TIR.0.V.cif
- - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_1TM_TIR.0.V.cif
- - /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR.Rst_2TM_1TM_TIR__Rst_TIR_tm.0.V.cif
+::article-structure
+::
## Experimental validation
diff --git a/content/3.defense-systems/rst_3hp.md b/content/3.defense-systems/rst_3hp.md
index b20735b5fc4ef56171c160df6cc19958949dcb24..8fe7c10b04cca288430d7a1817ff8cc9eb7ee21c 100644
--- a/content/3.defense-systems/rst_3hp.md
+++ b/content/3.defense-systems/rst_3hp.md
@@ -38,29 +38,12 @@ The Rst_3HP system in *Aquitalea denitrificans* (GCF_009856625.1, NZ_CP047241) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_3HP is detected in 417 genomes (1.83 %).
-
-The system was detected in 89 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_3HP system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_3HP
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_3hp/Rst_3HP.Rst_3HP__Hp1.0.V.cif
- - /rst_3hp/Rst_3HP.Rst_3HP__Hp3.0.V.cif
- - /rst_3hp/Rst_3HP.Rst_3HP__Hp2.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rst_duf4238.md b/content/3.defense-systems/rst_duf4238.md
index 4ba8aeb38ae836bbf44eec47d7373f303543f8ac..9a350bdc757afe4dd6b8cc44c206481fca0a037c 100644
--- a/content/3.defense-systems/rst_duf4238.md
+++ b/content/3.defense-systems/rst_duf4238.md
@@ -38,27 +38,12 @@ The Rst_DUF4238 system in *Novosphingobium pentaromativorans* (GCF_000767465.1,
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_DUF4238 is detected in 46 genomes (0.2 %).
-
-The system was detected in 37 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_DUF4238 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_DUF4238
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_duf4238/Rst_DUF4238__DUF4238_Pers.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rst_gop_beta_cll.md b/content/3.defense-systems/rst_gop_beta_cll.md
index 28bba6749670be92e057d5fb6cd3312823aae48d..2d5c7838ca5ac2a831035b989f370cc37795046e 100644
--- a/content/3.defense-systems/rst_gop_beta_cll.md
+++ b/content/3.defense-systems/rst_gop_beta_cll.md
@@ -45,29 +45,12 @@ The Rst_gop_beta_cll system in *Klebsiella grimontii* (GCF_019334465.1, NZ_CP079
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_gop_beta_cll is detected in 37 genomes (0.16 %).
-
-The system was detected in 15 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_gop_beta_cll system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_gop_beta_cll
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__cll.0.V.cif
- - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__gop.0.V.cif
- - /rst_gop_beta_cll/Rst_gop_beta_cll.Rst_gop_beta_cll__beta.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rst_helicaseduf2290.md b/content/3.defense-systems/rst_helicaseduf2290.md
index 43b3872ebb4916bc6ba00f0fa4412e94b81f2e28..69d0eb5e7366edb84aa2728869f07a248dc02835 100644
--- a/content/3.defense-systems/rst_helicaseduf2290.md
+++ b/content/3.defense-systems/rst_helicaseduf2290.md
@@ -40,28 +40,12 @@ The Rst_HelicaseDUF2290 system in *Klebsiella quasipneumoniae* (GCF_003020825.1,
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_HelicaseDUF2290 is detected in 207 genomes (0.91 %).
-
-The system was detected in 123 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_HelicaseDUF2290 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_HelicaseDUF2290
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_helicaseduf2290/Rst_HelicaseDUF2290.Rst_HelicaseDUF2290__DUF2290.0.V.cif
- - /rst_helicaseduf2290/Rst_HelicaseDUF2290.Rst_HelicaseDUF2290__Helicase.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rst_hydrolase-3tm.md b/content/3.defense-systems/rst_hydrolase-3tm.md
index b5ada2fa2a13df132f18e07677c5056e312f7b6e..6af5e89de6eb866f6d5fd9308cbaa369ae471562 100644
--- a/content/3.defense-systems/rst_hydrolase-3tm.md
+++ b/content/3.defense-systems/rst_hydrolase-3tm.md
@@ -27,28 +27,12 @@ The Rst_Hydrolase-Tm system in *Pectobacterium versatile* (GCF_003031305.1, NZ_C
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_Hydrolase-3Tm is detected in 42 genomes (0.18 %).
-
-The system was detected in 34 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_Hydrolase-3Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_Hydrolase-Tm
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_hydrolase-3tm/Rst_Hydrolase-Tm.Rst_Hydrolase-Tm__Hydrolase.0.V.cif
- - /rst_hydrolase-3tm/Rst_Hydrolase-Tm.Rst_Hydrolase-Tm__Hydrolase-Tm.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rst_rt-nitrilase-tm.md b/content/3.defense-systems/rst_rt-nitrilase-tm.md
index 1856604663ba3f098ccf46d362b690257c8a4499..15d062e4d31341566cdf45d0b7518f455cb305c7 100644
--- a/content/3.defense-systems/rst_rt-nitrilase-tm.md
+++ b/content/3.defense-systems/rst_rt-nitrilase-tm.md
@@ -42,28 +42,12 @@ The Rst_RT-Tm system in *Morganella morganii* (GCF_900478755.1, NZ_LS483498) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_RT-nitrilase-Tm is detected in 25 genomes (0.11 %).
-
-The system was detected in 5 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_RT-nitrilase-Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_RT-Tm
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_rt-nitrilase-tm/Rst_RT-Tm.Rst_RT-Tm__RT-Tm.0.V.cif
- - /rst_rt-nitrilase-tm/Rst_RT-Tm.Rst_RT-Tm__RT.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/rst_tir-nlr.md b/content/3.defense-systems/rst_tir-nlr.md
index 3b7a456d2d0bee18bb2693b18d59727760795d5e..2258bcf6f9f7ee93f85dcba938d421c9847b2c3d 100644
--- a/content/3.defense-systems/rst_tir-nlr.md
+++ b/content/3.defense-systems/rst_tir-nlr.md
@@ -40,27 +40,12 @@ The Rst_TIR-NLR system in *Methylosinus sp. C49* (GCF_009936375.1, NZ_AP022332)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Rst_TIR-NLR is detected in 233 genomes (1.02 %).
-
-The system was detected in 42 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Rst_TIR-NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Rst_TIR-NLR
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /rst_tir-nlr/Rst_TIR-NLR__TIR.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/sanata.md b/content/3.defense-systems/sanata.md
index 19ce4926cde3f0bf96026a32f7c1c73276127a73..6683a3249a5a415132d2b179b491a5683e0edc5d 100644
--- a/content/3.defense-systems/sanata.md
+++ b/content/3.defense-systems/sanata.md
@@ -39,28 +39,12 @@ The SanaTA system in *Euzebyella marina* (GCF_003687485.1, NZ_CP032050) is compo
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the SanaTA is detected in 992 genomes (4.35 %).
-
-The system was detected in 519 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the SanaTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### SanaTA
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /sanata/SanaTA.SanaTA_SanaA.0.V.cif
- - /sanata/SanaTA.SanaTA_SanaT.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/sefir.md b/content/3.defense-systems/sefir.md
index 992d587fb6b98ae2e1328a5ab1be65879966120f..f10999aab4f11de1b45ac0f25366147cd798780d 100644
--- a/content/3.defense-systems/sefir.md
+++ b/content/3.defense-systems/sefir.md
@@ -43,27 +43,12 @@ The SEFIR system in *Haliangium ochraceum* (GCF_000024805.1, NC_013440) is compo
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the SEFIR is detected in 358 genomes (1.57 %).
-
-The system was detected in 218 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the SEFIR system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### SEFIR
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /sefir/SEFIR__bSEFIR.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/septu.md b/content/3.defense-systems/septu.md
index f31c2b2ba5fceb6f567ec441ef96f74f93096bd9..351a888b2a03904ca6a4fc022d55588690e83777 100644
--- a/content/3.defense-systems/septu.md
+++ b/content/3.defense-systems/septu.md
@@ -52,55 +52,12 @@ The Septu system in *Burkholderia pyrrocinia* (GCF_001028665.1, NZ_CP011503) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Septu is detected in 2130 genomes (9.34 %).
-
-The system was detected in 1112 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Septu system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-
-### Experimentaly determined structure
-
-From :ref{doi=10.1038/s41594-023-01172-8} in *Escherichia coli*:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /septu/8ee4_EcPtuA_6mer.pdb
- - /septu/8ee7_EcPtuAB_2_1mer.pdb
- - /septu/8eea_EcPtuAB_6_3mer.pdb
----
+::article-system-distribution-plot
::
-### Septu
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /septu/Septu.Septu__PtuA.1.V.cif
- - /septu/Septu.Septu__PtuB.1.V.cif
-
----
-::
-
-##### Example 2
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /septu/Septu.Septu__PtuB.1.V.cif
- - /septu/Septu.Septu__PtuA.1.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/shango.md b/content/3.defense-systems/shango.md
index bca0b50064a346ad2be5ddc5234e68933ee7fd98..210faba73f0beed88e1d5513f510930c24d2dc1b 100644
--- a/content/3.defense-systems/shango.md
+++ b/content/3.defense-systems/shango.md
@@ -40,29 +40,12 @@ The Shango system in *Anoxybacillus sp. B2M1* (GCF_001634265.1, NZ_CP015435) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Shango is detected in 1095 genomes (4.8 %).
-
-The system was detected in 446 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Shango system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Shango
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /shango/Shango.Shango__SngA.0.V.cif
- - /shango/Shango.Shango__SngB.0.V.cif
- - /shango/Shango.Shango__SngC.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/shedu.md b/content/3.defense-systems/shedu.md
index df718488f265f2e296e4943f7b8c43bc5560e852..9a8b88aa03bfb1e19491daf0c129b705f1d551ab 100644
--- a/content/3.defense-systems/shedu.md
+++ b/content/3.defense-systems/shedu.md
@@ -44,27 +44,12 @@ The Shedu system in *Bradyrhizobium ottawaense* (GCF_002278135.2, NZ_CP029425) i
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Shedu is detected in 876 genomes (3.84 %).
-
-The system was detected in 552 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Shedu system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Shedu
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /shedu/Shedu__SduA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/shosta.md b/content/3.defense-systems/shosta.md
index 2228e895ed3564cca21d078f8ec65b1b2dea54ab..53094b3b4b17610ff29b71a0c0334b29b699845d 100644
--- a/content/3.defense-systems/shosta.md
+++ b/content/3.defense-systems/shosta.md
@@ -41,28 +41,12 @@ The ShosTA system in *Enterobacter cloacae* (GCF_009707405.1, NZ_CP046116) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the ShosTA is detected in 535 genomes (2.35 %).
-
-The system was detected in 240 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the ShosTA system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### ShosTA
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /shosta/ShosTA.ShosTA__ShosA.0.V.cif
- - /shosta/ShosTA.ShosTA__ShosT.0.V.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/sofic.md b/content/3.defense-systems/sofic.md
index 0723dfdfe0a5f93b428b7e778ac547c704b50848..798f45fc2a3cf3c4b2e44b912f0260984e5f189b 100644
--- a/content/3.defense-systems/sofic.md
+++ b/content/3.defense-systems/sofic.md
@@ -27,27 +27,12 @@ The SoFic system in *Morococcus cerebrosus* (GCF_022749515.1, NZ_CP094242) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the SoFIC is detected in 2266 genomes (9.94 %).
-
-The system was detected in 1160 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the SoFIC system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### SoFic
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /sofic/SoFic__SoFic.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/spbk.md b/content/3.defense-systems/spbk.md
index 9bc251c51ee1f21e4ddb7efda09117e6fd75aa3f..5655b74d4669430ef76c51d19c51c2e1e80b23e7 100644
--- a/content/3.defense-systems/spbk.md
+++ b/content/3.defense-systems/spbk.md
@@ -27,27 +27,12 @@ The SpbK system in *Hymenobacter busanensis* (GCF_009906935.1, NZ_CP047647) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the SpbK is detected in 214 genomes (0.94 %).
-
-The system was detected in 90 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the SpbK system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### SpbK
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /spbk/SpbK__SpbK.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/sspbcde.md b/content/3.defense-systems/sspbcde.md
index 725dbd1f62ff9e296bde6c775285542ba7d6a675..5659a20dcd7e93f696f8ac46b7e151529249faac 100644
--- a/content/3.defense-systems/sspbcde.md
+++ b/content/3.defense-systems/sspbcde.md
@@ -28,45 +28,12 @@ The SspBCDE system in *Vibrio fluvialis* (GCF_018140575.1, NZ_CP073273) is compo
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the SspBCDE is detected in 578 genomes (2.53 %).
-
-The system was detected in 299 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the SspBCDE system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### SspBCDE
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /sspbcde/SspBCDE.SspBCDE__SspC.1.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspD.0.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspE.0.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspB.1.V.cif
-
----
+::article-system-distribution-plot
::
-##### Example 2
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /sspbcde/SspBCDE.SspBCDE__SspH.1.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspG.1.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspF.1.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspD.0.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspC.1.V.cif
- - /sspbcde/SspBCDE.SspBCDE__SspB.1.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/stk2.md b/content/3.defense-systems/stk2.md
index ce301fae8c714d1c2279e6378d1b795b561e4c9a..c3f16eacc1ba1c23d7fbee8ac28884020449c3e3 100644
--- a/content/3.defense-systems/stk2.md
+++ b/content/3.defense-systems/stk2.md
@@ -40,27 +40,12 @@ The Stk2 system in *Bacillus rugosus* (GCF_023238245.1, NZ_CP096590) is composed
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Stk2 is detected in 140 genomes (0.61 %).
-
-The system was detected in 29 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Stk2 system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Stk2
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /stk2/Stk2__Stk2.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/thoeris.md b/content/3.defense-systems/thoeris.md
index cbe4bcbc09d84eb247335561f95b2630f47af65a..8a4662e8ddd7e9d9f97599ea2fa5bb053de77e3a 100644
--- a/content/3.defense-systems/thoeris.md
+++ b/content/3.defense-systems/thoeris.md
@@ -47,55 +47,12 @@ The Thoeris_I system in *Sneathia vaginalis* (GCF_000973085.1, NZ_CP011280) is c
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Thoeris is detected in 777 genomes (3.41 %).
-
-The system was detected in 298 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Thoeris system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-
-### Experimentaly determined structure
-
-From :ref{doi=10.1038/s41467-020-16703-w} in *Bacillus cereus* MSX-D12:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /thoeris/6lhx_BcThsA_4mer.pdb
- - /thoeris/6lhy_BcThsB_1mer.pdb
- - /thoeris/7uxs_BcThsA_2mer_cdpr.pdb
----
-::
-
-### Thoeris_I
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /thoeris/Thoeris_I.Thoeris_I__ThsA_new_grand.0.V.cif
- - /thoeris/Thoeris_I.Thoeris__ThsB_Global.0.V.cif
-
----
+::article-system-distribution-plot
::
-### Thoeris_II
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /thoeris/Thoeris_I.Thoeris__ThsB_Global.0.V.cif
- - /thoeris/Thoeris_II.Thoeris_II__ThsA_new_petit.0.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/tiamat.md b/content/3.defense-systems/tiamat.md
index 278140549b45a95b8e0be5b7362d02d965c1e527..b36e722feab6382aff51052291d9d825da0e87be 100644
--- a/content/3.defense-systems/tiamat.md
+++ b/content/3.defense-systems/tiamat.md
@@ -40,27 +40,12 @@ The Tiamat system in *Undibacterium parvum* (GCF_003955735.1, NZ_CP034464) is co
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Tiamat is detected in 326 genomes (1.43 %).
-
-The system was detected in 251 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Tiamat system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Tiamat
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /tiamat/Tiamat__TmtA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/uzume.md b/content/3.defense-systems/uzume.md
index 1e80fc278674513e868aa05bc369d19a9c148c86..1ca661eb074792c6604962719dc8be0447766c15 100644
--- a/content/3.defense-systems/uzume.md
+++ b/content/3.defense-systems/uzume.md
@@ -26,27 +26,12 @@ The Uzume system in *Priestia megaterium* (GCF_013146705.1, NZ_CP045273) is comp
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Uzume is detected in 125 genomes (0.55 %).
-
-The system was detected in 87 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Uzume system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Uzume
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /uzume/Uzume__UzmA.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/viperin.md b/content/3.defense-systems/viperin.md
index 55cfa34ce9c98c933470a13d9be2416d472c9cc4..05980489d5f686beb9d864475b68fae1d3d2ebd1 100644
--- a/content/3.defense-systems/viperin.md
+++ b/content/3.defense-systems/viperin.md
@@ -47,27 +47,12 @@ The Viperin system in *Vibrio sp. SCSIO 43009* (GCF_023716525.1, NZ_CP071842) is
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Viperin is detected in 118 genomes (0.52 %).
-
-The system was detected in 95 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Viperin system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
+::article-system-distribution-plot
+::
## Structure
-### Viperin
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /viperin/Viperin__pVip.cif
----
+::article-structure
::
## Experimental validation
diff --git a/content/3.defense-systems/wadjet.md b/content/3.defense-systems/wadjet.md
index b7cf6be62449173f33eaaef6de7e216c0c361984..c0b313b9262964abdb41e0ed4c6bb44669806ce4 100644
--- a/content/3.defense-systems/wadjet.md
+++ b/content/3.defense-systems/wadjet.md
@@ -51,76 +51,14 @@ The Wadjet_III system in *Cytobacillus spongiae* (GCF_021390075.1, NZ_CP089997)
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Wadjet is detected in 2351 genomes (10.31 %).
-
-The system was detected in 1467 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Wadjet system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-
-### Experimentally determined structure
-
-From :ref{doi=10.1098/rstb.2004.1606} in *Pseudomonas aeruginosa* PA14:
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /wadjet/7til_JetD_2mer.pdb
- - /wadjet/8dk1_JetABC_2_4_2mer_head.pdb
- - /wadjet/8dk2_JetABC_2_4_2mer_dna.cif
----
+::article-system-distribution-plot
::
-### Wadjet_I
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /wadjet/Wadjet_I.Wadjet__JetA_I.0.V.cif
- - /wadjet/Wadjet_I.Wadjet__JetB_I.0.V.cif
- - /wadjet/Wadjet_I.Wadjet__JetC_I.0.V.cif
- - /wadjet/Wadjet_I.Wadjet__JetD_I.0.V.cif
-
----
-::
-### Wadjet_II
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /wadjet/Wadjet_II.Wadjet__JetD_II.0.V.cif
- - /wadjet/Wadjet_II.Wadjet__JetC_II.0.V.cif
- - /wadjet/Wadjet_II.Wadjet__JetB_II.0.V.cif
- - /wadjet/Wadjet_II.Wadjet__JetA_II.0.V.cif
-
----
-::
-### Wadjet_III
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /wadjet/Wadjet_III.Wadjet__JetD_III.0.V.cif
- - /wadjet/Wadjet_III.Wadjet__JetA_III.0.V.cif
- - /wadjet/Wadjet_III.Wadjet__JetB_III.0.V.cif
- - /wadjet/Wadjet_III.Wadjet__JetC_III.0.V.cif
+## Structure
----
+::article-structure
::
-
## Experimental validation
::info
diff --git a/content/3.defense-systems/zorya.md b/content/3.defense-systems/zorya.md
index 0ec6e008c4038805300971a17aaef380e93eda1b..c9dfe6bda4a4d93b859c6adb1d410bd5fd34c190 100644
--- a/content/3.defense-systems/zorya.md
+++ b/content/3.defense-systems/zorya.md
@@ -54,43 +54,12 @@ The Zorya_TypeII system in *Pectobacterium aroidearum* (GCF_015689195.1, NZ_CP06
## Distribution of the system among prokaryotes
-Among the 22,803 complete genomes of RefSeq, the Zorya is detected in 803 genomes (3.52 %).
-
-The system was detected in 310 different species.
-
-{max-width=750px}
-
-Proportion of genome encoding the Zorya system for the 14 phyla with more than 50 genomes in the RefSeq database.
-
-
-
-## Structure
-### Zorya_TypeI
-##### Example 1
-
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /zorya/Zorya_TypeI.Zorya_TypeI__ZorC.0.V.cif
- - /zorya/Zorya_TypeI.Zorya_TypeI__ZorD.0.V.cif
- - /zorya/Zorya_TypeII.Zorya__ZorA.0.V.cif
- - /zorya/Zorya_TypeI.Zorya__ZorB.0.V.cif
-
----
+::article-system-distribution-plot
::
-### Zorya_TypeII
-##### Example 1
-::molstar-pdbe-plugin
----
-height: 700
-dataUrls:
- - /zorya/Zorya_TypeII.Zorya__ZorA.0.V.cif
- - /zorya/Zorya_TypeI.Zorya__ZorB.0.V.cif
- - /zorya/Zorya_TypeII.Zorya_TypeII__ZorE.0.V.cif
+## Structure
----
+::article-structure
::
## Experimental validation