From e6b4d3f300185ace28e0e6b956ae51dba76c6cab Mon Sep 17 00:00:00 2001
From: Remi PLANEL <rplanel@pasteur.fr>
Date: Thu, 22 Feb 2024 19:00:52 +0100
Subject: [PATCH] get the preprint as well
---
packages/df-wiki-cli/df_wiki_cli/articles/__init__.py | 8 ++++----
packages/df-wiki-cli/df_wiki_cli/articles/main.py | 3 ++-
2 files changed, 6 insertions(+), 5 deletions(-)
diff --git a/packages/df-wiki-cli/df_wiki_cli/articles/__init__.py b/packages/df-wiki-cli/df_wiki_cli/articles/__init__.py
index fd164cd5..7e90a068 100644
--- a/packages/df-wiki-cli/df_wiki_cli/articles/__init__.py
+++ b/packages/df-wiki-cli/df_wiki_cli/articles/__init__.py
@@ -22,7 +22,7 @@ def fetch_articles_from_zotero(
format="csljson",
limit=batch_size,
start=i,
- # itemType="journalArticle",
+ itemType="journalArticle || Preprint",
sort="title",
)["items"]
for item in items:
@@ -143,7 +143,7 @@ def add_articles_to_zotero_from_doi(doi, key):
items_to_add = [zitem]
zot.check_items(items_to_add)
- res = zot.create_items(items_to_add)
- new_item = res["successful"]["0"]
- zot.addto_collection("BSWL96X3", new_item)
+ # res = zot.create_items(items_to_add)
+ # new_item = res["successful"]["0"]
+ # zot.addto_collection("BSWL96X3", new_item)
console.print("[green]done")
diff --git a/packages/df-wiki-cli/df_wiki_cli/articles/main.py b/packages/df-wiki-cli/df_wiki_cli/articles/main.py
index c1ff6b32..5c4bc2c8 100644
--- a/packages/df-wiki-cli/df_wiki_cli/articles/main.py
+++ b/packages/df-wiki-cli/df_wiki_cli/articles/main.py
@@ -63,7 +63,8 @@ def missing_doi(
zotero_data = json.load(zotero_f)
for d in zotero_data:
if "DOI" in d:
- zotero_dois_set.add(d["DOI"].lower())
+ doi_lower = d["DOI"].lower()
+ zotero_dois_set.add(doi_lower)
dois_set = set()
for file in dir.rglob("*"):
--
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