From fe038c24df70c93454f592641f56bed4de6364ec Mon Sep 17 00:00:00 2001 From: ftesson <florian.tesson@pasteur.fr> Date: Fri, 6 Oct 2023 10:52:26 +0200 Subject: [PATCH] add mol start module in all the pages --- content/2.defense-systems/abia.md | 27 ++ content/2.defense-systems/abib.md | 11 + content/2.defense-systems/abic.md | 11 + content/2.defense-systems/abid.md | 11 + content/2.defense-systems/abie.md | 18 ++ content/2.defense-systems/abig.md | 18 ++ content/2.defense-systems/abih.md | 11 + content/2.defense-systems/abii.md | 11 + content/2.defense-systems/abij.md | 11 + content/2.defense-systems/abik.md | 11 + content/2.defense-systems/abil.md | 18 ++ content/2.defense-systems/abin.md | 11 + content/2.defense-systems/abio.md | 11 + content/2.defense-systems/abip2.md | 11 + content/2.defense-systems/abiq.md | 11 + content/2.defense-systems/abir.md | 25 ++ content/2.defense-systems/abit.md | 18 ++ content/2.defense-systems/abiu.md | 11 + content/2.defense-systems/abiv.md | 11 + content/2.defense-systems/abiz.md | 11 + content/2.defense-systems/aditi.md | 18 ++ content/2.defense-systems/avs.md | 68 +++++ content/2.defense-systems/azaca.md | 25 ++ content/2.defense-systems/borvo.md | 11 + content/2.defense-systems/brex.md | 215 ++++++++++++++++ content/2.defense-systems/bsta.md | 25 ++ content/2.defense-systems/bunzi.md | 18 ++ .../2.defense-systems/butters_gp30_gp31.md | 18 ++ content/2.defense-systems/butters_gp57r.md | 11 + content/2.defense-systems/caprel.md | 11 + content/2.defense-systems/cbass.md | 122 +++++++++ content/2.defense-systems/charlie_gp32.md | 11 + content/2.defense-systems/dartg.md | 18 ++ content/2.defense-systems/dazbog.md | 34 +++ content/2.defense-systems/dctpdeaminase.md | 11 + content/2.defense-systems/detocs.md | 48 ++++ content/2.defense-systems/dgtpase.md | 11 + content/2.defense-systems/dmdde.md | 18 ++ content/2.defense-systems/dnd.md | 97 ++++++++ content/2.defense-systems/dodola.md | 18 ++ content/2.defense-systems/dpd.md | 90 +++++++ content/2.defense-systems/drt.md | 97 ++++++++ content/2.defense-systems/druantia.md | 85 +++++++ content/2.defense-systems/dsr.md | 20 ++ content/2.defense-systems/eleos.md | 18 ++ content/2.defense-systems/fs_giy_yig.md | 11 + content/2.defense-systems/fs_hepn_tm.md | 18 ++ content/2.defense-systems/fs_hp.md | 11 + content/2.defense-systems/fs_hp_sdh_sah.md | 18 ++ content/2.defense-systems/fs_hsdr_like.md | 18 ++ content/2.defense-systems/fs_sma.md | 11 + content/2.defense-systems/gabija.md | 18 ++ content/2.defense-systems/gao_ape.md | 11 + content/2.defense-systems/gao_her.md | 34 +++ content/2.defense-systems/gao_hhe.md | 11 + content/2.defense-systems/gao_iet.md | 18 ++ content/2.defense-systems/gao_mza.md | 39 +++ content/2.defense-systems/gao_ppl.md | 11 + content/2.defense-systems/gao_qat.md | 32 +++ content/2.defense-systems/gao_rl.md | 32 +++ content/2.defense-systems/gao_tery.md | 25 ++ content/2.defense-systems/gao_tmn.md | 11 + content/2.defense-systems/gao_upx.md | 11 + content/2.defense-systems/gaps1.md | 11 + content/2.defense-systems/gaps2.md | 11 + content/2.defense-systems/gaps4.md | 18 ++ content/2.defense-systems/gaps6.md | 18 ++ content/2.defense-systems/gasdermin.md | 46 ++++ content/2.defense-systems/hachiman.md | 20 ++ content/2.defense-systems/hna.md | 11 + content/2.defense-systems/isg15-like.md | 149 +++++++++++ content/2.defense-systems/jukab.md | 18 ++ content/2.defense-systems/kiwa.md | 18 ++ content/2.defense-systems/lamassu-fam.md | 232 ++++++++++++++++++ content/2.defense-systems/lit.md | 11 + content/2.defense-systems/mads.md | 53 ++++ content/2.defense-systems/menshen.md | 25 ++ content/2.defense-systems/mmb_gp29_gp30.md | 18 ++ content/2.defense-systems/mok_hok_sok.md | 11 + content/2.defense-systems/mokosh.md | 43 ++++ content/2.defense-systems/nhi.md | 11 + content/2.defense-systems/nixi.md | 11 + content/2.defense-systems/nlr.md | 20 ++ content/2.defense-systems/old_exonuclease.md | 11 + content/2.defense-systems/olokun.md | 18 ++ content/2.defense-systems/pago.md | 73 ++++++ content/2.defense-systems/panchino_gp28.md | 11 + content/2.defense-systems/paris.md | 52 ++++ content/2.defense-systems/pd-lambda-1.md | 11 + content/2.defense-systems/pd-lambda-2.md | 25 ++ content/2.defense-systems/pd-lambda-3.md | 25 ++ content/2.defense-systems/pd-lambda-4.md | 18 ++ content/2.defense-systems/pd-lambda-5.md | 18 ++ content/2.defense-systems/pd-lambda-6.md | 11 + content/2.defense-systems/pd-t4-1.md | 11 + content/2.defense-systems/pd-t4-10.md | 18 ++ content/2.defense-systems/pd-t4-2.md | 18 ++ content/2.defense-systems/pd-t4-3.md | 11 + content/2.defense-systems/pd-t4-4.md | 18 ++ content/2.defense-systems/pd-t4-5.md | 11 + content/2.defense-systems/pd-t4-6.md | 11 + content/2.defense-systems/pd-t4-7.md | 11 + content/2.defense-systems/pd-t4-8.md | 11 + content/2.defense-systems/pd-t4-9.md | 25 ++ content/2.defense-systems/pd-t7-1.md | 11 + content/2.defense-systems/pd-t7-2.md | 18 ++ content/2.defense-systems/pd-t7-3.md | 11 + content/2.defense-systems/pd-t7-4.md | 11 + content/2.defense-systems/pd-t7-5.md | 11 + content/2.defense-systems/pfiat.md | 18 ++ content/2.defense-systems/pif.md | 18 ++ content/2.defense-systems/prrc.md | 18 ++ content/2.defense-systems/psyrta.md | 18 ++ content/2.defense-systems/pycsar.md | 34 +++ content/2.defense-systems/radar.md | 41 ++++ content/2.defense-systems/retron.md | 198 +++++++++++++++ content/2.defense-systems/rexab.md | 18 ++ content/2.defense-systems/rloc.md | 11 + content/2.defense-systems/rm.md | 92 +++++++ content/2.defense-systems/rnlab.md | 18 ++ content/2.defense-systems/rosmerta.md | 18 ++ content/2.defense-systems/rst_2tm_1tm_tir.md | 25 ++ content/2.defense-systems/rst_3hp.md | 25 ++ content/2.defense-systems/rst_duf4238.md | 11 + content/2.defense-systems/rst_gop_beta_cll.md | 25 ++ .../2.defense-systems/rst_helicaseduf2290.md | 18 ++ .../2.defense-systems/rst_hydrolase-3tm.md | 18 ++ .../2.defense-systems/rst_rt-nitrilase-tm.md | 18 ++ content/2.defense-systems/rst_tir-nlr.md | 11 + content/2.defense-systems/sanata.md | 18 ++ content/2.defense-systems/sefir.md | 11 + content/2.defense-systems/septu.md | 34 +++ content/2.defense-systems/shango.md | 27 ++ content/2.defense-systems/shedu.md | 11 + content/2.defense-systems/shosta.md | 18 ++ content/2.defense-systems/sofic.md | 11 + content/2.defense-systems/spbk.md | 11 + content/2.defense-systems/sspbcde.md | 76 ++++++ content/2.defense-systems/stk2.md | 11 + content/2.defense-systems/thoeris.md | 34 +++ content/2.defense-systems/tiamat.md | 11 + content/2.defense-systems/uzume.md | 11 + content/2.defense-systems/viperin.md | 11 + content/2.defense-systems/wadjet.md | 92 +++++++ content/2.defense-systems/zorya.md | 55 +++++ 145 files changed, 4066 insertions(+) diff --git a/content/2.defense-systems/abia.md b/content/2.defense-systems/abia.md index dfc59ca9..3e5d554c 100644 --- a/content/2.defense-systems/abia.md +++ b/content/2.defense-systems/abia.md @@ -34,6 +34,33 @@ Among the 22k complete genomes of RefSeq, this system is present in 50 genomes ( *Proportion of genome encoding the AbiA system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### AbiA_large + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abia/AbiA_large__AbiA_large-plddts_90.82916.pdb +--- +:: + +### AbiA_small + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abia/AbiA_small,AbiA_small__AbiA_SLATT,0,DF-plddts_94.13374.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abia/AbiA_small,AbiA_small__AbiA_small,0,DF-plddts_89.82347.pdb +--- +:: + ## Experimental validation AbiA systems were experimentally validated using: diff --git a/content/2.defense-systems/abib.md b/content/2.defense-systems/abib.md index 1951d72e..959c1e9f 100644 --- a/content/2.defense-systems/abib.md +++ b/content/2.defense-systems/abib.md @@ -29,6 +29,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 13 genomes ( *Proportion of genome encoding the AbiB system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiB + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abib/AbiB__AbiB-plddts_74.5545.pdb +--- +:: + ## Experimental validation AbiB systems were experimentally validated using: diff --git a/content/2.defense-systems/abic.md b/content/2.defense-systems/abic.md index aa9f9f39..4c321b67 100644 --- a/content/2.defense-systems/abic.md +++ b/content/2.defense-systems/abic.md @@ -30,6 +30,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 196 genomes *Proportion of genome encoding the AbiC system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiC + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abic/AbiC__AbiC-plddts_83.80335.pdb +--- +:: + ## Experimental validation AbiC systems were experimentally validated using: diff --git a/content/2.defense-systems/abid.md b/content/2.defense-systems/abid.md index 41f5e4b6..859e3ff9 100644 --- a/content/2.defense-systems/abid.md +++ b/content/2.defense-systems/abid.md @@ -30,6 +30,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 2748 genomes *Proportion of genome encoding the AbiD system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiD + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abid/AbiD__AbiD-plddts_91.87407.pdb +--- +:: + ## Experimental validation AbiD systems were experimentally validated using: diff --git a/content/2.defense-systems/abie.md b/content/2.defense-systems/abie.md index b6b5fac0..97c486ca 100644 --- a/content/2.defense-systems/abie.md +++ b/content/2.defense-systems/abie.md @@ -42,6 +42,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 3742 genomes *Proportion of genome encoding the AbiE system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiE + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abie/AbiE,AbiE__AbiEi,0,V-plddts_85.81224.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abie/AbiE,AbiE__AbiEii,0,V-plddts_90.73768.pdb +--- +:: + ## Experimental validation AbiE systems were experimentally validated using: diff --git a/content/2.defense-systems/abig.md b/content/2.defense-systems/abig.md index 56d3ffb4..c09c51da 100644 --- a/content/2.defense-systems/abig.md +++ b/content/2.defense-systems/abig.md @@ -30,6 +30,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 33 genomes ( *Proportion of genome encoding the AbiG system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiG + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abig/AbiG,AbiG__AbiGi,0,V-plddts_92.08021.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abig/AbiG,AbiG__AbiGii,0,V-plddts_88.01846.pdb +--- +:: + ## Experimental validation AbiG systems were experimentally validated using: diff --git a/content/2.defense-systems/abih.md b/content/2.defense-systems/abih.md index c03615df..1cdbca8e 100644 --- a/content/2.defense-systems/abih.md +++ b/content/2.defense-systems/abih.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 1277 genomes *Proportion of genome encoding the AbiH system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiH + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abih/AbiH__AbiH-plddts_91.3485.pdb +--- +:: + ## Experimental validation AbiH systems were experimentally validated using: diff --git a/content/2.defense-systems/abii.md b/content/2.defense-systems/abii.md index 92b213f9..51258f24 100644 --- a/content/2.defense-systems/abii.md +++ b/content/2.defense-systems/abii.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0 *Proportion of genome encoding the AbiI system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiI + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abii/AbiI__AbiI-plddts_90.31131.pdb +--- +:: + ## Experimental validation AbiI systems were experimentally validated using: diff --git a/content/2.defense-systems/abij.md b/content/2.defense-systems/abij.md index b2e9663d..3dd7202f 100644 --- a/content/2.defense-systems/abij.md +++ b/content/2.defense-systems/abij.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 807 genomes *Proportion of genome encoding the AbiJ system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiJ + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abij/AbiJ__AbiJ-plddts_85.12535.pdb +--- +:: + ## Experimental validation AbiJ systems were experimentally validated using: diff --git a/content/2.defense-systems/abik.md b/content/2.defense-systems/abik.md index e8646b5d..302dfa96 100644 --- a/content/2.defense-systems/abik.md +++ b/content/2.defense-systems/abik.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 107 genomes *Proportion of genome encoding the AbiK system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiK + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abik/AbiK__AbiK-plddts_91.42521.pdb +--- +:: + ## Experimental validation AbiK systems were experimentally validated using: diff --git a/content/2.defense-systems/abil.md b/content/2.defense-systems/abil.md index dedac392..7366105c 100644 --- a/content/2.defense-systems/abil.md +++ b/content/2.defense-systems/abil.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 783 genomes *Proportion of genome encoding the AbiL system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiL + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abil/AbiL,AbiL__AbiLi,0,V-plddts_89.17612.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abil/AbiL,AbiL__AbiLii,0,V-plddts_86.69766.pdb +--- +:: + ## Experimental validation AbiL systems were experimentally validated using: diff --git a/content/2.defense-systems/abin.md b/content/2.defense-systems/abin.md index 466e2528..1fd77dd7 100644 --- a/content/2.defense-systems/abin.md +++ b/content/2.defense-systems/abin.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 167 genomes *Proportion of genome encoding the AbiN system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiN + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abin/AbiN__AbiN-plddts_84.27216.pdb +--- +:: + ## Experimental validation AbiN systems were experimentally validated using: diff --git a/content/2.defense-systems/abio.md b/content/2.defense-systems/abio.md index c445c3c4..dc3c7605 100644 --- a/content/2.defense-systems/abio.md +++ b/content/2.defense-systems/abio.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 109 genomes *Proportion of genome encoding the AbiO system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiO + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abio/AbiO__AbiO-plddts_87.43501.pdb +--- +:: + ## Experimental validation AbiO systems were experimentally validated using: diff --git a/content/2.defense-systems/abip2.md b/content/2.defense-systems/abip2.md index d3882bf2..21826d2e 100644 --- a/content/2.defense-systems/abip2.md +++ b/content/2.defense-systems/abip2.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 299 genomes *Proportion of genome encoding the AbiP2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiP2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abip2/AbiP2__AbiP2-plddts_93.08218.pdb +--- +:: + ## Experimental validation AbiP2 systems were experimentally validated using: diff --git a/content/2.defense-systems/abiq.md b/content/2.defense-systems/abiq.md index c1a35984..6ebaf509 100644 --- a/content/2.defense-systems/abiq.md +++ b/content/2.defense-systems/abiq.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 262 genomes *Proportion of genome encoding the AbiQ system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiQ + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abiq/AbiQ__AbiQ-plddts_90.84212.pdb +--- +:: + ## Experimental validation AbiQ systems were experimentally validated using: diff --git a/content/2.defense-systems/abir.md b/content/2.defense-systems/abir.md index f6192898..a6fe10b1 100644 --- a/content/2.defense-systems/abir.md +++ b/content/2.defense-systems/abir.md @@ -32,6 +32,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 56 genomes ( *Proportion of genome encoding the AbiR system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiR + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abir/AbiR,AbiR__AbiRa,0,V-plddts_88.45598.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abir/AbiR,AbiR__AbiRb,0,V-plddts_92.82829.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abir/AbiR,AbiR__AbiRc,0,V-plddts_86.60767.pdb +--- +:: + ## Experimental validation AbiR systems were experimentally validated using: diff --git a/content/2.defense-systems/abit.md b/content/2.defense-systems/abit.md index 745ffd70..8633cc68 100644 --- a/content/2.defense-systems/abit.md +++ b/content/2.defense-systems/abit.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 8 genomes (0 *Proportion of genome encoding the AbiT system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiT + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abit/AbiT,AbiT__AbiTi,0,V-plddts_81.84478.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abit/AbiT,AbiT__AbiTii,0,V-plddts_88.46375.pdb +--- +:: + ## Experimental validation AbiT systems were experimentally validated using: diff --git a/content/2.defense-systems/abiu.md b/content/2.defense-systems/abiu.md index aab3cac1..8538b98c 100644 --- a/content/2.defense-systems/abiu.md +++ b/content/2.defense-systems/abiu.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 1017 genomes *Proportion of genome encoding the AbiU system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiU + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abiu/AbiU__AbiU-plddts_84.61928.pdb +--- +:: + ## Experimental validation AbiU systems were experimentally validated using: diff --git a/content/2.defense-systems/abiv.md b/content/2.defense-systems/abiv.md index 9264f4ba..4109b049 100644 --- a/content/2.defense-systems/abiv.md +++ b/content/2.defense-systems/abiv.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 126 genomes *Proportion of genome encoding the AbiV system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiV + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abiv/AbiV__AbiV-plddts_93.56204.pdb +--- +:: + ## Experimental validation AbiV systems were experimentally validated using: diff --git a/content/2.defense-systems/abiz.md b/content/2.defense-systems/abiz.md index b58ed7f1..e14cb4c0 100644 --- a/content/2.defense-systems/abiz.md +++ b/content/2.defense-systems/abiz.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 831 genomes *Proportion of genome encoding the AbiZ system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### AbiZ + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /abiz/AbiZ__AbiZ-plddts_78.85683.pdb +--- +:: + ## Experimental validation AbiZ systems were experimentally validated using: diff --git a/content/2.defense-systems/aditi.md b/content/2.defense-systems/aditi.md index 7cf40394..80440778 100644 --- a/content/2.defense-systems/aditi.md +++ b/content/2.defense-systems/aditi.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 40 genomes ( *Proportion of genome encoding the Aditi system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Aditi + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /aditi/Aditi,Aditi__DitA,0,V-plddts_93.42072.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /aditi/Aditi,Aditi__DitB,0,V-plddts_90.75274.pdb +--- +:: + ## Experimental validation Aditi systems were experimentally validated using: diff --git a/content/2.defense-systems/avs.md b/content/2.defense-systems/avs.md index 66b3ae80..b2a45709 100644 --- a/content/2.defense-systems/avs.md +++ b/content/2.defense-systems/avs.md @@ -76,6 +76,74 @@ dataUrl: /avs/AVAST_I,AVAST_I__Avs1B,0,V-plddts_80.96481.pdb --- :: +## Structure + +### Avs_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_I,AVAST_I__Avs1A,0,V-plddts_85.07081.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_I,AVAST_I__Avs1B,0,V-plddts_80.96481.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_I,AVAST_I__Avs1C,0,V-plddts_81.74849.pdb +--- +:: + +### Avs_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_II__Avs2A-plddts_86.07393.pdb +--- +:: + +### Avs_III + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_III,AVAST_III__Avs3A,0,V-plddts_81.87773.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_III,AVAST_III__Avs3B,0,V-plddts_71.16048.pdb +--- +:: + +### Avs_IV + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_IV__Avs4A-plddts_87.35544.pdb +--- +:: + +### Avs_V + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /avs/AVAST_V__Avs5A-plddts_89.56857.pdb +--- +:: + ## Experimental validation Avs systems were experimentally validated using: diff --git a/content/2.defense-systems/azaca.md b/content/2.defense-systems/azaca.md index 68d72594..d1bcfc5e 100644 --- a/content/2.defense-systems/azaca.md +++ b/content/2.defense-systems/azaca.md @@ -32,6 +32,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 206 genomes *Proportion of genome encoding the Azaca system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Azaca + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /azaca/Azaca,Azaca__ZacA,0,V-plddts_85.13072.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /azaca/Azaca,Azaca__ZacB,0,V-plddts_87.34712.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /azaca/Azaca,Azaca__ZacC,0,V-plddts_86.69875.pdb +--- +:: + ## Experimental validation Azaca systems were experimentally validated using: diff --git a/content/2.defense-systems/borvo.md b/content/2.defense-systems/borvo.md index 204dda16..ae79276b 100644 --- a/content/2.defense-systems/borvo.md +++ b/content/2.defense-systems/borvo.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 650 genomes *Proportion of genome encoding the Borvo system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Borvo + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /borvo/Borvo__BovA-plddts_90.79263.pdb +--- +:: + ## Experimental validation Borvo systems were experimentally validated using: diff --git a/content/2.defense-systems/brex.md b/content/2.defense-systems/brex.md index 00a9a263..0a775b8f 100644 --- a/content/2.defense-systems/brex.md +++ b/content/2.defense-systems/brex.md @@ -59,6 +59,221 @@ Among the 22k complete genomes of RefSeq, this system is present in 1612 genomes *Proportion of genome encoding the BREX system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### BREX_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_II,BREX__brxD,0,DF-plddts_88.40179.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_II,BREX__pglW,0,DF-plddts_77.91126.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_II,BREX__pglX2,0,DF-plddts_87.98644.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_II,BREX__pglY,0,DF-plddts_83.07386.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_II,BREX__pglZ2,0,DF-plddts_86.2672.pdb +--- +:: + +### BREX_III + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_III,BREX__brxA,0,DF-plddts_92.03753.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_III,BREX__brxC,0,DF-plddts_85.62129.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_III,BREX__brxF,0,DF-plddts_95.59973.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_III,BREX__brxHII,0,DF-plddts_82.85526.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_III,BREX__pglXI,0,DF-plddts_86.98487.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_III,BREX__pglZ3,0,DF-plddts_89.03152.pdb +--- +:: + +### BREX_IV + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_IV,BREX__PglZ,0,DF-plddts_86.90171.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_IV,BREX__brxC,0,DF-plddts_85.82022.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_IV,BREX__brxL,0,DF-plddts_92.06923.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_IV,BREX__brxP,0,DF-plddts_88.53431.pdb +--- +:: + +### BREX_V + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_V,BREX__brxA_DUF1819,0,DF-plddts_96.04893.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_V,BREX__brxB_DUF1788,0,DF-plddts_90.45365.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_V,BREX__brxC,0,DF-plddts_82.61479.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_V,BREX__brxHII,0,DF-plddts_83.9134.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_V,BREX__pglX1,0,DF-plddts_92.49306.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_V,BREX__pglZA,0,DF-plddts_92.2016.pdb +--- +:: + +### BREX_VI + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX__brxB_DUF1788,0,DF-plddts_91.60152.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX__brxC,0,DF-plddts_86.1139.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX__brxD,0,DF-plddts_90.67427.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX__brxE,0,DF-plddts_90.30329.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX__brxHI,0,DF-plddts_87.87451.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX__pglX1,0,DF-plddts_78.09923.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX__pglZA,0,DF-plddts_88.59061.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /brex/BREX_VI,BREX_brxA,0,DF-plddts_93.93224.pdb +--- +:: + ## Experimental validation BREX systems were experimentally validated using: diff --git a/content/2.defense-systems/bsta.md b/content/2.defense-systems/bsta.md index 3b06e7f6..b09a2c2d 100644 --- a/content/2.defense-systems/bsta.md +++ b/content/2.defense-systems/bsta.md @@ -41,6 +41,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 236 genomes *Proportion of genome encoding the BstA system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### BstA + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /bsta/BstA__BstA-plddts_84.76542.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /bsta/BstA__BstA1-plddts_85.78689.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /bsta/BstA__BstA2-plddts_92.11235.pdb +--- +:: + ## Experimental validation BstA systems were experimentally validated using: diff --git a/content/2.defense-systems/bunzi.md b/content/2.defense-systems/bunzi.md index 8b1612a2..80521d88 100644 --- a/content/2.defense-systems/bunzi.md +++ b/content/2.defense-systems/bunzi.md @@ -31,6 +31,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 286 genomes *Proportion of genome encoding the Bunzi system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Bunzi + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /bunzi/Bunzi,Bunzi__BnzA,0,V-plddts_83.13475.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /bunzi/Bunzi,Bunzi__BnzB,0,V-plddts_86.79774.pdb +--- +:: + ## Experimental validation Bunzi systems were experimentally validated using: diff --git a/content/2.defense-systems/butters_gp30_gp31.md b/content/2.defense-systems/butters_gp30_gp31.md index 6f03ec35..2c2d571a 100644 --- a/content/2.defense-systems/butters_gp30_gp31.md +++ b/content/2.defense-systems/butters_gp30_gp31.md @@ -11,6 +11,24 @@ tableColumns: ## To do +## Structure + +### Butters_gp30_gp31 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp30-plddts_79.33298.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /butters_gp30_gp31/Butters_gp30_gp31__Butters_gp31-plddts_84.75463.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/butters_gp57r.md b/content/2.defense-systems/butters_gp57r.md index 520d08dd..667e04be 100644 --- a/content/2.defense-systems/butters_gp57r.md +++ b/content/2.defense-systems/butters_gp57r.md @@ -11,6 +11,17 @@ tableColumns: ## To do +## Structure + +### Butters_gp57r + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /butters_gp57r/Butters_gp57r__gp57r-plddts_90.7432.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/caprel.md b/content/2.defense-systems/caprel.md index 0af2ca37..8da95d75 100644 --- a/content/2.defense-systems/caprel.md +++ b/content/2.defense-systems/caprel.md @@ -44,6 +44,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 407 genomes *Proportion of genome encoding the CapRel system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### CapRel + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /caprel/CapRel__CapRel-plddts_90.09132.pdb +--- +:: + ## Experimental validation CapRel systems were experimentally validated using: diff --git a/content/2.defense-systems/cbass.md b/content/2.defense-systems/cbass.md index 0283bb78..9f8d7bb7 100644 --- a/content/2.defense-systems/cbass.md +++ b/content/2.defense-systems/cbass.md @@ -44,6 +44,128 @@ Among the 22k complete genomes of RefSeq, this system is present in 2938 genomes *Proportion of genome encoding the CBASS system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### CBASS_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_I,CBASS__Cyclase_II,0,V-plddts_92.48144.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_I,CBASS__TM,0,V-plddts_91.45177.pdb +--- +:: + +### CBASS_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_II,CBASS__AG_E2_Prok-E2,0,V-plddts_89.8018.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_II,CBASS__Cyclase_II,0,V-plddts_89.65358.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_II,CBASS__Jab,0,V-plddts_95.53434.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_II,CBASS__Phospholipase,0,V-plddts_89.1622.pdb +--- +:: + +### CBASS_III + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_III,CBASS__Cyclase_II,0,V-plddts_97.70389.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_III,CBASS__Endonuc_small,0,V-plddts_97.03481.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_III,CBASS__HORMA,0,V-plddts_89.50696.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_III,CBASS__TRIP13,0,V-plddts_89.6492.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_III,CBASS__bacHORMA_2,0,V-plddts_84.43633.pdb +--- +:: + +### CBASS_IV + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_IV,CBASS__2TM_type_IV,0,DF-plddts_87.89742.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_IV,CBASS__Cyclase_SMODS,0,DF-plddts_87.98201.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_IV,CBASS__OGG,0,DF-plddts_95.21551.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_IV,CBASS__QueC,0,DF-plddts_93.98141.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /cbass/CBASS_IV,CBASS__TGT,0,DF-plddts_93.84001.pdb +--- +:: + ## Experimental validation CBASS systems were experimentally validated using: diff --git a/content/2.defense-systems/charlie_gp32.md b/content/2.defense-systems/charlie_gp32.md index 39c1703a..3eb45867 100644 --- a/content/2.defense-systems/charlie_gp32.md +++ b/content/2.defense-systems/charlie_gp32.md @@ -11,6 +11,17 @@ tableColumns: ## To do +## Structure + +### Charlie_gp32 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /charlie_gp32/Charlie_gp32__gp32-plddts_82.99758.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/dartg.md b/content/2.defense-systems/dartg.md index 43360126..f1701699 100644 --- a/content/2.defense-systems/dartg.md +++ b/content/2.defense-systems/dartg.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 955 genomes *Proportion of genome encoding the DarTG system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### DarTG + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dartg/DarTG,DarTG_DarG,0,DF-plddts_94.40611.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dartg/DarTG,DarTG_DarT,0,DF-plddts_94.62475.pdb +--- +:: + ## Experimental validation DarTG systems were experimentally validated using: diff --git a/content/2.defense-systems/dazbog.md b/content/2.defense-systems/dazbog.md index 8bd4c17f..75d1c319 100644 --- a/content/2.defense-systems/dazbog.md +++ b/content/2.defense-systems/dazbog.md @@ -31,6 +31,40 @@ Among the 22k complete genomes of RefSeq, this system is present in 73 genomes ( *Proportion of genome encoding the Dazbog system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Dazbog + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dazbog/Dazbog,Dazbog__DzbA,0,V-plddts_87.87307.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dazbog/Dazbog,Dazbog__DzbB,0,V-plddts_93.82789.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dazbog/Dazbog,Dazbog__DzbA,0,V-plddts_87.87307.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dazbog/Dazbog,Dazbog__DzbB,0,V-plddts_93.82789.pdb +--- +:: + ## Experimental validation Dazbog systems were experimentally validated using: diff --git a/content/2.defense-systems/dctpdeaminase.md b/content/2.defense-systems/dctpdeaminase.md index 76e0ef11..81cee478 100644 --- a/content/2.defense-systems/dctpdeaminase.md +++ b/content/2.defense-systems/dctpdeaminase.md @@ -42,6 +42,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 501 genomes *Proportion of genome encoding the dCTPdeaminase system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### dCTPdeaminase + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dctpdeaminase/dCTPdeaminase__dCTPdeaminase-plddts_91.37723.pdb +--- +:: + ## Experimental validation dCTPdeaminase systems were experimentally validated using: diff --git a/content/2.defense-systems/detocs.md b/content/2.defense-systems/detocs.md index f85fdc51..eb185621 100644 --- a/content/2.defense-systems/detocs.md +++ b/content/2.defense-systems/detocs.md @@ -12,6 +12,54 @@ tableColumns: ## To do +## Structure + +### Detocs + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /detocs/Detocs__dtcA-plddts_86.06608.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /detocs/Detocs__dtcB-plddts_95.55971.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /detocs/Detocs__dtcC-plddts_94.54261.pdb +--- +:: + +### Detocs_hydrolase + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /detocs/Detocs_hydrolase__dtcA-plddts_85.48132.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /detocs/Detocs_hydrolase__dtcB-plddts_93.6662.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /detocs/Detocs_hydrolase__dtcC-plddts_89.47253.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/dgtpase.md b/content/2.defense-systems/dgtpase.md index 0002507c..b35ac920 100644 --- a/content/2.defense-systems/dgtpase.md +++ b/content/2.defense-systems/dgtpase.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 1532 genomes *Proportion of genome encoding the dGTPase system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### dGTPase + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dgtpase/dGTPase__Sp_dGTPase-plddts_94.35719.pdb +--- +:: + ## Experimental validation dGTPase systems were experimentally validated using: diff --git a/content/2.defense-systems/dmdde.md b/content/2.defense-systems/dmdde.md index 1aa12aa1..25c3aca6 100644 --- a/content/2.defense-systems/dmdde.md +++ b/content/2.defense-systems/dmdde.md @@ -28,6 +28,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 145 genomes *Proportion of genome encoding the DmdDE system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### DdmDE + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dmdde/DdmDE,DdmDE__DdmD,0,V-plddts_86.22213.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dmdde/DdmDE,DdmDE__DdmE,0,V-plddts_90.70804.pdb +--- +:: + ## Relevant abstracts ::article-doi-list diff --git a/content/2.defense-systems/dnd.md b/content/2.defense-systems/dnd.md index bb5b8f40..7b5e8dfa 100644 --- a/content/2.defense-systems/dnd.md +++ b/content/2.defense-systems/dnd.md @@ -36,6 +36,103 @@ Among the 22k complete genomes of RefSeq, this system is present in 388 genomes *Proportion of genome encoding the Dnd system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Dnd_ABCDE + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDE,Dnd__DndA,0,DF-plddts_93.47347.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDE,Dnd__DndB,0,DF-plddts_92.88424.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDE,Dnd__DndC,0,DF-plddts_88.29934.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDE,Dnd__DndD,0,DF-plddts_86.40104.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDE,Dnd__DndE,0,DF-plddts_94.0153.pdb +--- +:: + +### Dnd_ABCDEFGH + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd_ABCDEFGH__DptF,0,DF-plddts_90.5398.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd_ABCDEFGH__DptG,0,DF-plddts_92.29053.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd_ABCDEFGH__DptH,0,DF-plddts_83.00895.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd__DndA,0,DF-plddts_95.7234.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd__DndB,0,DF-plddts_94.63597.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd__DndC,0,DF-plddts_90.06321.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd__DndD,0,DF-plddts_85.70431.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dnd/Dnd_ABCDEFGH,Dnd__DndE,0,DF-plddts_95.24932.pdb +--- +:: + ## Experimental validation Dnd systems were experimentally validated using: diff --git a/content/2.defense-systems/dodola.md b/content/2.defense-systems/dodola.md index 546c3eb7..ec967ec7 100644 --- a/content/2.defense-systems/dodola.md +++ b/content/2.defense-systems/dodola.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 313 genomes *Proportion of genome encoding the Dodola system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Dodola + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dodola/Dodola,Dodola__DolA,0,V-plddts_78.91796.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dodola/Dodola,Dodola__DolB,0,V-plddts_92.53304.pdb +--- +:: + ## Experimental validation Dodola systems were experimentally validated using: diff --git a/content/2.defense-systems/dpd.md b/content/2.defense-systems/dpd.md index eb479e92..72476559 100644 --- a/content/2.defense-systems/dpd.md +++ b/content/2.defense-systems/dpd.md @@ -29,6 +29,96 @@ Among the 22k complete genomes of RefSeq, this system is present in 226 genomes *Proportion of genome encoding the Dpd system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Dpd + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd.Dpd__DpdF.0.DF-plddts_89.51241.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd.Dpd__DpdF.0.DF-plddts_89.51241.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdA,0,DF-plddts_94.55021.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdB,0,DF-plddts_93.00056.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdC,0,DF-plddts_93.71712.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdD,0,DF-plddts_85.62349.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdE,0,DF-plddts_88.00382.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdG,0,DF-plddts_91.59671.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdH,0,DF-plddts_85.20178.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdI,0,DF-plddts_83.71254.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdJ,0,DF-plddts_89.00672.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dpd/Dpd,Dpd__DpdK,0,DF-plddts_93.96529.pdb +--- +:: + ## Relevant abstracts ::article-doi-list diff --git a/content/2.defense-systems/drt.md b/content/2.defense-systems/drt.md index d880cdf3..3a27a761 100644 --- a/content/2.defense-systems/drt.md +++ b/content/2.defense-systems/drt.md @@ -60,6 +60,103 @@ Among the 22k complete genomes of RefSeq, this system is present in 1365 genomes *Proportion of genome encoding the DRT system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### DRT6 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT6__DRT6-plddts_92.73056.pdb +--- +:: + +### DRT7 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT7__DRT7-plddts_85.85621.pdb +--- +:: + +### DRT8 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT8__DRT8-plddts_92.44735.pdb +--- +:: + +### DRT9 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT9__DRT9-plddts_91.47402.pdb +--- +:: + +### DRT_1 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT_1,DRT_1__drt1a,0,V-plddts_88.59974.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT_1,DRT_1__drt1b,0,V-plddts_92.26985.pdb +--- +:: + +### DRT_2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT_2__drt2-plddts_95.09027.pdb +--- +:: + +### DRT_3 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT_3,DRT_3__drt3a,0,V-plddts_91.16835.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT_3,DRT_3__drt3b,0,V-plddts_87.11665.pdb +--- +:: + +### DRT_4 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT_4__drt4-plddts_92.79751.pdb +--- +:: + +### DRT_5 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /drt/DRT_5__drt5-plddts_90.89502.pdb +--- +:: + ## Experimental validation DRT systems were experimentally validated using: diff --git a/content/2.defense-systems/druantia.md b/content/2.defense-systems/druantia.md index 7eaab9cf..df988b0a 100644 --- a/content/2.defense-systems/druantia.md +++ b/content/2.defense-systems/druantia.md @@ -40,6 +40,91 @@ Among the 22k complete genomes of RefSeq, this system is present in 827 genomes *Proportion of genome encoding the Druantia system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Druantia_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_I,Druantia_I__DruA,0,V-plddts_88.89293.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_I,Druantia_I__DruB,0,V-plddts_82.83057.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_I,Druantia_I__DruC,0,V-plddts_85.18836.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_I,Druantia_I__DruD,0,V-plddts_91.26112.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_I,Druantia__DruE,0,V-plddts_86.11628.pdb +--- +:: + +### Druantia_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_II,Druantia_II__DruF,0,DF-plddts_86.11001.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_II,Druantia_II__DruG,0,DF-plddts_80.40261.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_II,Druantia_II__DruM,0,DF-plddts_90.00131.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_II,Druantia__DruE_2,0,DF-plddts_84.77074.pdb +--- +:: + +### Druantia_III + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_III,Druantia_III__DruH,0,DF-plddts_82.87318.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /druantia/Druantia_III,Druantia__DruE_3,0,DF-plddts_83.26091.pdb +--- +:: + ## Experimental validation Druantia systems were experimentally validated using: diff --git a/content/2.defense-systems/dsr.md b/content/2.defense-systems/dsr.md index 165b5832..a7905085 100644 --- a/content/2.defense-systems/dsr.md +++ b/content/2.defense-systems/dsr.md @@ -36,6 +36,26 @@ Among the 22k complete genomes of RefSeq, this system is present in 641 genomes *Proportion of genome encoding the Dsr system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Dsr_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dsr/Dsr_I__Dsr1-plddts_87.99578.pdb +--- +:: + +### Dsr_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /dsr/Dsr_II__Dsr2-plddts_86.62203.pdb +--- +:: + ## Experimental validation Dsr systems were experimentally validated using: diff --git a/content/2.defense-systems/eleos.md b/content/2.defense-systems/eleos.md index f1738f4d..9527d1a9 100644 --- a/content/2.defense-systems/eleos.md +++ b/content/2.defense-systems/eleos.md @@ -33,6 +33,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 2652 genomes *Proportion of genome encoding the Eleos system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Eleos + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /eleos/Eleos,Eleos__LeoA,0,V-plddts_81.66314.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /eleos/Eleos,Eleos__LeoBC,0,V-plddts_83.32056.pdb +--- +:: + ## Experimental validation Eleos systems were experimentally validated using: diff --git a/content/2.defense-systems/fs_giy_yig.md b/content/2.defense-systems/fs_giy_yig.md index 5d946fe1..f9affe9c 100644 --- a/content/2.defense-systems/fs_giy_yig.md +++ b/content/2.defense-systems/fs_giy_yig.md @@ -11,6 +11,17 @@ tableColumns: ## To do +## Structure + +### FS_GIY_YIG + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_giy_yig/FS_GIY_YIG__GIY_YIG-plddts_93.05664.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/fs_hepn_tm.md b/content/2.defense-systems/fs_hepn_tm.md index 239eb07f..f8697b2d 100644 --- a/content/2.defense-systems/fs_hepn_tm.md +++ b/content/2.defense-systems/fs_hepn_tm.md @@ -11,6 +11,24 @@ tableColumns: ## To do +## Structure + +### FS_HEPN_TM + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_hepn_tm/FS_HEPN_TM__HEPN-plddts_69.12248.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_hepn_tm/FS_HEPN_TM__TM-plddts_90.28126.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/fs_hp.md b/content/2.defense-systems/fs_hp.md index 7e66e331..81787539 100644 --- a/content/2.defense-systems/fs_hp.md +++ b/content/2.defense-systems/fs_hp.md @@ -11,6 +11,17 @@ tableColumns: ## To do +## Structure + +### FS_HP + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_hp/FS_HP__HP-plddts_94.44828.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/fs_hp_sdh_sah.md b/content/2.defense-systems/fs_hp_sdh_sah.md index 7db0ba9c..ce4bc5a5 100644 --- a/content/2.defense-systems/fs_hp_sdh_sah.md +++ b/content/2.defense-systems/fs_hp_sdh_sah.md @@ -12,6 +12,24 @@ tableColumns: ## To do +## Structure + +### FS_HP_SDH_sah + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_hp_sdh_sah/FS_HP_SDH_sah__HP-plddts_58.30935.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_hp_sdh_sah/FS_HP_SDH_sah__SDH_sah-plddts_95.32024.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/fs_hsdr_like.md b/content/2.defense-systems/fs_hsdr_like.md index 3f668c21..e4728223 100644 --- a/content/2.defense-systems/fs_hsdr_like.md +++ b/content/2.defense-systems/fs_hsdr_like.md @@ -11,6 +11,24 @@ tableColumns: ## To do +## Structure + +### FS_HsdR_like + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_hsdr_like/FS_HsdR_like__HP-plddts_74.75219.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_hsdr_like/FS_HsdR_like__HdrR-plddts_88.7069.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/fs_sma.md b/content/2.defense-systems/fs_sma.md index 502da111..c46982c8 100644 --- a/content/2.defense-systems/fs_sma.md +++ b/content/2.defense-systems/fs_sma.md @@ -12,6 +12,17 @@ tableColumns: ## To do +## Structure + +### FS_Sma + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /fs_sma/FS_Sma__Sma-plddts_94.14969.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/gabija.md b/content/2.defense-systems/gabija.md index 5de114e4..3bfbef7c 100644 --- a/content/2.defense-systems/gabija.md +++ b/content/2.defense-systems/gabija.md @@ -42,6 +42,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 3762 genomes *Proportion of genome encoding the Gabija system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gabija + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gabija/Gabija,Gabija_GajB,0,V-plddts_91.3911.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gabija/Gabija,Gabija__GajA,0,V-plddts_86.08162.pdb +--- +:: + ## Experimental validation Gabija systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_ape.md b/content/2.defense-systems/gao_ape.md index c104f609..dc4c279a 100644 --- a/content/2.defense-systems/gao_ape.md +++ b/content/2.defense-systems/gao_ape.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 199 genomes *Proportion of genome encoding the Gao_Ape system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Ape + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_ape/Gao_Ape__ApeA-plddts_90.44181.pdb +--- +:: + ## Experimental validation Gao_Ape systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_her.md b/content/2.defense-systems/gao_her.md index 771a2e63..01ff9317 100644 --- a/content/2.defense-systems/gao_her.md +++ b/content/2.defense-systems/gao_her.md @@ -36,6 +36,40 @@ Among the 22k complete genomes of RefSeq, this system is present in 233 genomes *Proportion of genome encoding the Gao_Her system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Gao_Her_DUF + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_her/Gao_Her_DUF,Gao_Her_DUF__DUF4297,0,V-plddts_91.87572.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_her/Gao_Her_DUF,Gao_Her_DUF__HerA_DUF,0,V-plddts_88.91697.pdb +--- +:: + +### Gao_Her_SIR + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_her/Gao_Her_SIR,Gao_Her_SIR__HerA_SIR2,0,V-plddts_86.52691.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_her/Gao_Her_SIR,Gao_Her_SIR__SIR2,0,V-plddts_87.76893.pdb +--- +:: + ## Experimental validation Gao_Her systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_hhe.md b/content/2.defense-systems/gao_hhe.md index 77d1201a..1670158b 100644 --- a/content/2.defense-systems/gao_hhe.md +++ b/content/2.defense-systems/gao_hhe.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 279 genomes *Proportion of genome encoding the Gao_Hhe system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Hhe + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_hhe/Gao_Hhe__HheA-plddts_81.41701.pdb +--- +:: + ## Experimental validation Gao_Hhe systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_iet.md b/content/2.defense-systems/gao_iet.md index d618744e..30a1bb7f 100644 --- a/content/2.defense-systems/gao_iet.md +++ b/content/2.defense-systems/gao_iet.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 436 genomes *Proportion of genome encoding the Gao_Iet system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Iet + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_iet/Gao_Iet,Gao_Iet__IetA,0,V-plddts_85.57017.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_iet/Gao_Iet,Gao_Iet__IetS,0,V-plddts_90.4167.pdb +--- +:: + ## Experimental validation Gao_Iet systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_mza.md b/content/2.defense-systems/gao_mza.md index 546f21f6..c0175bcd 100644 --- a/content/2.defense-systems/gao_mza.md +++ b/content/2.defense-systems/gao_mza.md @@ -32,6 +32,45 @@ Among the 22k complete genomes of RefSeq, this system is present in 99 genomes ( *Proportion of genome encoding the Gao_Mza system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Mza + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_mza/Gao_Mza,Gao_Mza__MzaA,0,V-plddts_73.82237.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_mza/Gao_Mza,Gao_Mza__MzaB,0,V-plddts_88.82333.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_mza/Gao_Mza,Gao_Mza__MzaC,0,V-plddts_83.55691.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_mza/Gao_Mza,Gao_Mza__MzaD,0,V-plddts_88.07953.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_mza/Gao_Mza,Gao_Mza__MzaE,0,V-plddts_87.92462.pdb +--- +:: + ## Experimental validation Gao_Mza systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_ppl.md b/content/2.defense-systems/gao_ppl.md index 06870207..e5b09671 100644 --- a/content/2.defense-systems/gao_ppl.md +++ b/content/2.defense-systems/gao_ppl.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 364 genomes *Proportion of genome encoding the Gao_Ppl system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Ppl + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_ppl/Gao_Ppl__PplA-plddts_89.89639.pdb +--- +:: + ## Experimental validation Gao_Ppl systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_qat.md b/content/2.defense-systems/gao_qat.md index ad110e33..44bcd63d 100644 --- a/content/2.defense-systems/gao_qat.md +++ b/content/2.defense-systems/gao_qat.md @@ -32,6 +32,38 @@ Among the 22k complete genomes of RefSeq, this system is present in 645 genomes *Proportion of genome encoding the Gao_Qat system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Qat + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_qat/Gao_Qat,Gao_Qat__QatA,0,V-plddts_81.28827.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_qat/Gao_Qat,Gao_Qat__QatB,0,V-plddts_86.3728.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_qat/Gao_Qat,Gao_Qat__QatC,0,V-plddts_93.16811.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_qat/Gao_Qat,Gao_Qat__QatD,0,V-plddts_94.78681.pdb +--- +:: + ## Experimental validation Gao_Qat systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_rl.md b/content/2.defense-systems/gao_rl.md index 76346a1d..81638280 100644 --- a/content/2.defense-systems/gao_rl.md +++ b/content/2.defense-systems/gao_rl.md @@ -32,6 +32,38 @@ Among the 22k complete genomes of RefSeq, this system is present in 133 genomes *Proportion of genome encoding the Gao_RL system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_RL + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_rl/Gao_RL,Gao_RL__RL_A,0,V-plddts_87.81206.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_rl/Gao_RL,Gao_RL__RL_B,0,V-plddts_87.72993.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_rl/Gao_RL,Gao_RL__RL_C,0,V-plddts_90.086.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_rl/Gao_RL,Gao_RL__RL_D,0,V-plddts_85.47115.pdb +--- +:: + ## Experimental validation Gao_RL systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_tery.md b/content/2.defense-systems/gao_tery.md index c00fc534..3136f99b 100644 --- a/content/2.defense-systems/gao_tery.md +++ b/content/2.defense-systems/gao_tery.md @@ -31,6 +31,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 126 genomes *Proportion of genome encoding the Gao_TerY system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_TerY + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_tery/Gao_TerY,Gao_TerY__TerYA,0,V-plddts_91.43497.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_tery/Gao_TerY,Gao_TerY__TerYB,0,V-plddts_95.75285.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_tery/Gao_TerY,Gao_TerY__TerYC,0,V-plddts_81.328.pdb +--- +:: + ## Experimental validation Gao_TerY systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_tmn.md b/content/2.defense-systems/gao_tmn.md index 948e8490..5286c665 100644 --- a/content/2.defense-systems/gao_tmn.md +++ b/content/2.defense-systems/gao_tmn.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 414 genomes *Proportion of genome encoding the Gao_Tmn system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Tmn + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_tmn/Gao_Tmn__TmnA-plddts_82.0142.pdb +--- +:: + ## Experimental validation Gao_Tmn systems were experimentally validated using: diff --git a/content/2.defense-systems/gao_upx.md b/content/2.defense-systems/gao_upx.md index 6380af64..eaabc6f4 100644 --- a/content/2.defense-systems/gao_upx.md +++ b/content/2.defense-systems/gao_upx.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 39 genomes ( *Proportion of genome encoding the Gao_Upx system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Gao_Upx + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gao_upx/Gao_Upx__UpxA-plddts_90.66658.pdb +--- +:: + ## Experimental validation Gao_Upx systems were experimentally validated using: diff --git a/content/2.defense-systems/gaps1.md b/content/2.defense-systems/gaps1.md index 317126a9..cdc79ff3 100644 --- a/content/2.defense-systems/gaps1.md +++ b/content/2.defense-systems/gaps1.md @@ -11,6 +11,17 @@ tableColumns: ## To do +## Structure + +### GAPS1 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gaps1/GAPS1__GAPS1-plddts_91.57482.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/gaps2.md b/content/2.defense-systems/gaps2.md index 5dda7086..f91cb36d 100644 --- a/content/2.defense-systems/gaps2.md +++ b/content/2.defense-systems/gaps2.md @@ -12,6 +12,17 @@ tableColumns: ## To do +## Structure + +### GAPS2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gaps2/GAPS2__GAPS2-plddts_87.94657.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/gaps4.md b/content/2.defense-systems/gaps4.md index 982c9a60..91d8f855 100644 --- a/content/2.defense-systems/gaps4.md +++ b/content/2.defense-systems/gaps4.md @@ -11,6 +11,24 @@ tableColumns: ## To do +## Structure + +### GAPS4 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gaps4/GAPS4__GAPS4a-plddts_91.74015.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gaps4/GAPS4__GAPS4b-plddts_86.45931.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/gaps6.md b/content/2.defense-systems/gaps6.md index 36906584..e2050db5 100644 --- a/content/2.defense-systems/gaps6.md +++ b/content/2.defense-systems/gaps6.md @@ -11,6 +11,24 @@ tableColumns: ## To do +## Structure + +### GAPS6 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gaps6/GAPS6__GAPS6a-plddts_82.29413.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gaps6/GAPS6__GAPS6b-plddts_90.04892.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/gasdermin.md b/content/2.defense-systems/gasdermin.md index 0f0fa0d5..65288df8 100644 --- a/content/2.defense-systems/gasdermin.md +++ b/content/2.defense-systems/gasdermin.md @@ -31,6 +31,52 @@ Among the 22k complete genomes of RefSeq, this system is present in 29 genomes ( *Proportion of genome encoding the GasderMIN system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### GasderMIN + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gasdermin/GasderMIN__ATPase-plddts_79.44181.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gasdermin/GasderMIN__Protease-plddts_85.56354.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gasdermin/GasderMIN__Protease1-plddts_86.2054.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gasdermin/GasderMIN__Protease2-plddts_85.10965.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gasdermin/GasderMIN__bGSDM-plddts_83.88977.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /gasdermin/GasderMIN__bGSDM1-plddts_65.95252.pdb +--- +:: + ## Experimental validation GasderMIN systems were experimentally validated using: diff --git a/content/2.defense-systems/hachiman.md b/content/2.defense-systems/hachiman.md index ef66cd4e..af4c59c4 100644 --- a/content/2.defense-systems/hachiman.md +++ b/content/2.defense-systems/hachiman.md @@ -38,6 +38,26 @@ Among the 22k complete genomes of RefSeq, this system is present in 1361 genomes *Proportion of genome encoding the Hachiman system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Hachiman + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /hachiman/Hachiman.Hachiman__HamB.0.V-plddts_88.00493.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /hachiman/Hachiman.Hachiman__HamB.0.V-plddts_88.00493.pdb +--- +:: + ## Experimental validation Hachiman systems were experimentally validated using: diff --git a/content/2.defense-systems/hna.md b/content/2.defense-systems/hna.md index 1933e3ce..d9811842 100644 --- a/content/2.defense-systems/hna.md +++ b/content/2.defense-systems/hna.md @@ -12,6 +12,17 @@ tableColumns: ## To do +## Structure + +### Hna + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /hna/Hna__Hna-plddts_91.2064.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/isg15-like.md b/content/2.defense-systems/isg15-like.md index d5894b86..fce57793 100644 --- a/content/2.defense-systems/isg15-like.md +++ b/content/2.defense-systems/isg15-like.md @@ -31,6 +31,155 @@ Among the 22k complete genomes of RefSeq, this system is present in 43 genomes ( *Proportion of genome encoding the ISG15-like system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### ISG15-like + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilA,0,V-plddts_93.65636.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilB,0,V-plddts_95.49136.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilC,0,V-plddts_92.06734.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilD,0,V-plddts_93.10226.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilA,0,V-plddts_93.65636.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilB,0,V-plddts_95.49136.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilC,0,V-plddts_92.06734.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilD,0,V-plddts_93.10226.pdb +--- +:: + +Example 3: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilA,0,V-plddts_93.65636.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilB,0,V-plddts_95.49136.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilC,0,V-plddts_92.06734.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilD,0,V-plddts_93.10226.pdb +--- +:: + +Example 4: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilA,0,V-plddts_93.65636.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilB,0,V-plddts_95.49136.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilC,0,V-plddts_92.06734.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilD,0,V-plddts_93.10226.pdb +--- +:: + +Example 5: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilA,0,V-plddts_93.65636.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilB,0,V-plddts_95.49136.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilC,0,V-plddts_92.06734.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /isg15-like/ISG15-like,ISG15-like__BilD,0,V-plddts_93.10226.pdb +--- +:: + ## Experimental validation ISG15-like systems were experimentally validated using: diff --git a/content/2.defense-systems/jukab.md b/content/2.defense-systems/jukab.md index 55295693..d7fdecf9 100644 --- a/content/2.defense-systems/jukab.md +++ b/content/2.defense-systems/jukab.md @@ -12,6 +12,24 @@ tableColumns: ## To do +## Structure + +### JukAB + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /jukab/JukAB__JukA-plddts_77.76916.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /jukab/JukAB__JukB-plddts_67.28863.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/kiwa.md b/content/2.defense-systems/kiwa.md index 517226cb..f4dfcf5e 100644 --- a/content/2.defense-systems/kiwa.md +++ b/content/2.defense-systems/kiwa.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 1104 genomes *Proportion of genome encoding the Kiwa system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Kiwa + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /kiwa/Kiwa,Kiwa__KwaA,0,V-plddts_86.99693.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /kiwa/Kiwa,Kiwa__KwaB,0,V-plddts_93.65136.pdb +--- +:: + ## Experimental validation Kiwa systems were experimentally validated using: diff --git a/content/2.defense-systems/lamassu-fam.md b/content/2.defense-systems/lamassu-fam.md index 436fcca0..d5543318 100644 --- a/content/2.defense-systems/lamassu-fam.md +++ b/content/2.defense-systems/lamassu-fam.md @@ -85,6 +85,238 @@ Among the 22k complete genomes of RefSeq, this system is present in 3939 genomes *Proportion of genome encoding the Lamassu-Fam system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Lamassu-Amidase + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Amidase,Lamassu-Fam__LmuA_effector_Amidase,0,DF-plddts_93.15132.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Amidase,Lamassu-Fam__LmuB_SMC_Amidase,0,DF-plddts_83.58631.pdb +--- +:: + +### Lamassu-Cap4_nuclease + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Cap4_nuclease,Lamassu-Fam__LmuA_effector_Cap4_nuclease_II,0,DF-plddts_93.57957.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Cap4_nuclease,Lamassu-Fam__LmuB_SMC_Cap4_nuclease_II,0,DF-plddts_90.05853.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Cap4_nuclease,Lamassu-Fam__LmuC_acc_Cap4_nuclease,0,DF-plddts_91.47415.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Cap4_nuclease,Lamassu-Fam__LmuA_effector_Cap4_nuclease_II,0,DF-plddts_93.57957.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Cap4_nuclease,Lamassu-Fam__LmuB_SMC_Cap4_nuclease_II,0,DF-plddts_90.05853.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Cap4_nuclease,Lamassu-Fam__LmuC_acc_Cap4_nuclease,0,DF-plddts_91.47415.pdb +--- +:: + +### Lamassu-FMO + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-FMO,Lamassu-Fam__LmuA_effector_FMO,0,DF-plddts_90.83272.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-FMO,Lamassu-Fam__LmuB_SMC_FMO,0,DF-plddts_83.19523.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-FMO,Lamassu-Fam__LmuC_acc_FMO,0,DF-plddts_89.32543.pdb +--- +:: + +### Lamassu-Fam_Hydrolase_Protease + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_Hydrolase_Protease,Lamassu-Fam__LmuA_effector_Hydrolase,0,V-plddts_93.45211.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_Hydrolase_Protease,Lamassu-Fam__LmuA_effector_Protease,0,V-plddts_90.19112.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_Hydrolase_Protease,Lamassu-Fam__LmuB_SMC_Hydrolase_protease,0,V-plddts_80.40324.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_Hydrolase_Protease,Lamassu-Fam__LmuC_acc_hydrolase_protease,0,V-plddts_89.02396.pdb +--- +:: + +### Lamassu-Fam_Mrr + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_Mrr,Lamassu-Fam__LmuA_effector_Mrr,0,V-plddts_84.76528.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_Mrr,Lamassu-Fam__LmuB_SMC_Mrr,0,V-plddts_85.79974.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_Mrr,Lamassu-Fam__LmuC_acc_Mrr,0,V-plddts_86.75101.pdb +--- +:: + +### Lamassu-Fam_PDDEXK + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_PDDEXK,Lamassu-Fam__LmuA_effector_PDDEXK,0,V-plddts_90.62277.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_PDDEXK,Lamassu-Fam__LmuB_SMC_PDDEXK,0,V-plddts_83.57058.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Fam_PDDEXK,Lamassu-Fam__LmuC_acc_PDDEXK,0,V-plddts_93.07571.pdb +--- +:: + +### Lamassu-Hypothetical + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Hypothetical,Lamassu-Fam__LmuA_effector_hypothetical,0,DF-plddts_87.29909.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Hypothetical,Lamassu-Fam__LmuB_SMC_hypothetical,0,DF-plddts_90.35013.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Hypothetical,Lamassu-Fam__LmuC_acc_hypothetical,0,DF-plddts_90.49821.pdb +--- +:: + +### Lamassu-Lipase + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Lipase,Lamassu-Fam__LmuA_effector_Lipase,0,DF-plddts_86.47244.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Lipase,Lamassu-Fam__LmuB_SMC_Lipase,0,DF-plddts_89.07634.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Lipase,Lamassu-Fam__LmuC_acc_Lipase,0,DF-plddts_86.70507.pdb +--- +:: + +### Lamassu-Sir2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Sir2,Lamassu-Fam__LmuA_effector_Sir2,0,DF-plddts_89.3866.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Sir2,Lamassu-Fam__LmuB_SMC_Sir2,0,DF-plddts_86.39095.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lamassu-fam/Lamassu-Sir2,Lamassu-Fam__LmuC_acc_Sir2,0,DF-plddts_85.94734.pdb +--- +:: + ## Experimental validation Lamassu-Fam systems were experimentally validated using: diff --git a/content/2.defense-systems/lit.md b/content/2.defense-systems/lit.md index fd7f1c62..32b06cbc 100644 --- a/content/2.defense-systems/lit.md +++ b/content/2.defense-systems/lit.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 455 genomes *Proportion of genome encoding the Lit system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Lit + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /lit/Lit__Lit-plddts_91.19971.pdb +--- +:: + ## Experimental validation Lit systems were experimentally validated using: diff --git a/content/2.defense-systems/mads.md b/content/2.defense-systems/mads.md index ef5756d1..da87bd01 100644 --- a/content/2.defense-systems/mads.md +++ b/content/2.defense-systems/mads.md @@ -12,6 +12,59 @@ tableColumns: ## To do +## Structure + +### MADS + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mads/MADS__mad1-plddts_82.3118.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mads/MADS__mad2-plddts_87.54253.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mads/MADS__mad3-plddts_93.27207.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mads/MADS__mad4-plddts_92.44061.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mads/MADS__mad5-plddts_93.90587.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mads/MADS__mad7-plddts_91.54141.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mads/MADS__mad8-plddts_82.23514.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/menshen.md b/content/2.defense-systems/menshen.md index 06f45bc2..21f5014d 100644 --- a/content/2.defense-systems/menshen.md +++ b/content/2.defense-systems/menshen.md @@ -32,6 +32,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 446 genomes *Proportion of genome encoding the Menshen system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Menshen + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /menshen/Menshen,Menshen__NsnA,0,V-plddts_87.39628.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /menshen/Menshen,Menshen__NsnB,0,V-plddts_89.66947.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /menshen/Menshen,Menshen__NsnC,0,V-plddts_91.07244.pdb +--- +:: + ## Experimental validation Menshen systems were experimentally validated using: diff --git a/content/2.defense-systems/mmb_gp29_gp30.md b/content/2.defense-systems/mmb_gp29_gp30.md index 4003dd63..ff876182 100644 --- a/content/2.defense-systems/mmb_gp29_gp30.md +++ b/content/2.defense-systems/mmb_gp29_gp30.md @@ -11,6 +11,24 @@ tableColumns: ## To do +## Structure + +### MMB_gp29_gp30 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mmb_gp29_gp30/MMB_gp29_gp30__gp29-plddts_82.71079.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mmb_gp29_gp30/MMB_gp29_gp30__gp30-plddts_65.6043.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/mok_hok_sok.md b/content/2.defense-systems/mok_hok_sok.md index 4ba47b49..b85774b0 100644 --- a/content/2.defense-systems/mok_hok_sok.md +++ b/content/2.defense-systems/mok_hok_sok.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 1687 genomes *Proportion of genome encoding the Mok_Hok_Sok system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Mok_Hok_Sok + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mok_hok_sok/Mok_Hok_Sok__Hok-plddts_80.98652.pdb +--- +:: + ## Experimental validation Mok_Hok_Sok systems were experimentally validated using: diff --git a/content/2.defense-systems/mokosh.md b/content/2.defense-systems/mokosh.md index a49346b2..63c3ac3c 100644 --- a/content/2.defense-systems/mokosh.md +++ b/content/2.defense-systems/mokosh.md @@ -36,6 +36,49 @@ Among the 22k complete genomes of RefSeq, this system is present in 2540 genomes *Proportion of genome encoding the Mokosh system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Mokosh_TypeI + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoA,0,V-plddts_81.37154.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoB,0,V-plddts_91.10094.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoA,0,V-plddts_81.37154.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mokosh/Mokosh_TypeI,Mokosh_TypeI__MkoB,0,V-plddts_91.10094.pdb +--- +:: + +### Mokosh_TypeII + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /mokosh/Mokosh_TypeII__MkoC-plddts_90.69139.pdb +--- +:: + ## Experimental validation Mokosh systems were experimentally validated using: diff --git a/content/2.defense-systems/nhi.md b/content/2.defense-systems/nhi.md index 675aa49a..bd224438 100644 --- a/content/2.defense-systems/nhi.md +++ b/content/2.defense-systems/nhi.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 202 genomes *Proportion of genome encoding the Nhi system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Nhi + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /nhi/Nhi__Nhi-plddts_83.89425.pdb +--- +:: + ## Experimental validation Nhi systems were experimentally validated using: diff --git a/content/2.defense-systems/nixi.md b/content/2.defense-systems/nixi.md index 5b44630e..6f1f25c0 100644 --- a/content/2.defense-systems/nixi.md +++ b/content/2.defense-systems/nixi.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 19 genomes ( *Proportion of genome encoding the NixI system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### NixI + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /nixi/NixI__NixI-plddts_92.38782.pdb +--- +:: + ## Experimental validation NixI systems were experimentally validated using: diff --git a/content/2.defense-systems/nlr.md b/content/2.defense-systems/nlr.md index 47795fc9..5397c4ba 100644 --- a/content/2.defense-systems/nlr.md +++ b/content/2.defense-systems/nlr.md @@ -36,6 +36,26 @@ Among the 22k complete genomes of RefSeq, this system is present in 453 genomes *Proportion of genome encoding the NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### NLR_like_bNACHT01 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /nlr/NLR_like_bNACHT01__NLR_like_bNACHT01-plddts_87.90581.pdb +--- +:: + +### NLR_like_bNACHT09 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /nlr/NLR_like_bNACHT09__NLR_like_bNACHT09-plddts_85.63627.pdb +--- +:: + ## Experimental validation NLR systems were experimentally validated using: diff --git a/content/2.defense-systems/old_exonuclease.md b/content/2.defense-systems/old_exonuclease.md index f87ae962..4421e4b1 100644 --- a/content/2.defense-systems/old_exonuclease.md +++ b/content/2.defense-systems/old_exonuclease.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 102 genomes *Proportion of genome encoding the Old_exonuclease system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Old_exonuclease + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /old_exonuclease/Old_exonuclease__Old_exonuclease-plddts_88.62156.pdb +--- +:: + ## Experimental validation Old_exonuclease systems were experimentally validated using: diff --git a/content/2.defense-systems/olokun.md b/content/2.defense-systems/olokun.md index 5b4693f4..5ce6b72b 100644 --- a/content/2.defense-systems/olokun.md +++ b/content/2.defense-systems/olokun.md @@ -31,6 +31,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 252 genomes *Proportion of genome encoding the Olokun system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Olokun + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /olokun/Olokun,Olokun__OloA,0,V-plddts_89.84697.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /olokun/Olokun,Olokun__OloB,0,V-plddts_85.67714.pdb +--- +:: + ## Experimental validation Olokun systems were experimentally validated using: diff --git a/content/2.defense-systems/pago.md b/content/2.defense-systems/pago.md index b0c6c6cb..c1cb6d2f 100644 --- a/content/2.defense-systems/pago.md +++ b/content/2.defense-systems/pago.md @@ -32,6 +32,79 @@ Among the 22k complete genomes of RefSeq, this system is present in 598 genomes *Proportion of genome encoding the pAgo system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### pAgo + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb +--- +:: + +Example 3: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb +--- +:: + +Example 4: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongB-plddts_92.47739.pdb +--- +:: + +Example 5: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongB-plddts_92.47739.pdb +--- +:: + +Example 6: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongA-plddts_90.01396.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pago/pAgo__pAgo_LongB-plddts_92.47739.pdb +--- +:: + ## Experimental validation pAgo systems were experimentally validated using: diff --git a/content/2.defense-systems/panchino_gp28.md b/content/2.defense-systems/panchino_gp28.md index 7af6b020..b38b38a3 100644 --- a/content/2.defense-systems/panchino_gp28.md +++ b/content/2.defense-systems/panchino_gp28.md @@ -12,6 +12,17 @@ tableColumns: ## To do +## Structure + +### Panchino_gp28 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /panchino_gp28/Panchino_gp28__gp28-plddts_90.80762.pdb +--- +:: + ## Relevant abstract ::article-doi-list --- diff --git a/content/2.defense-systems/paris.md b/content/2.defense-systems/paris.md index 6a881f78..56cf3f06 100644 --- a/content/2.defense-systems/paris.md +++ b/content/2.defense-systems/paris.md @@ -50,6 +50,58 @@ Among the 22k complete genomes of RefSeq, this system is present in 1145 genomes *Proportion of genome encoding the Paris system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### PARIS_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /paris/PARIS_I,PARIS_I__AAA_15,0,V-plddts_82.06453.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /paris/PARIS_I,Rst_PARIS__DUF4435,0,V-plddts_91.32921.pdb +--- +:: + +### PARIS_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /paris/PARIS_II,PARIS_II__AAA_21,0,V-plddts_81.78189.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /paris/PARIS_II,Rst_PARIS__DUF4435,0,V-plddts_95.50028.pdb +--- +:: + +### PARIS_II_merge + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /paris/PARIS_II_merge__AAA_21_DUF4435-plddts_93.06529.pdb +--- +:: + +### PARIS_I_merge + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /paris/PARIS_I_merge__AAA_15_DUF4435-plddts_85.1867.pdb +--- +:: + ## Experimental validation Paris systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-lambda-1.md b/content/2.defense-systems/pd-lambda-1.md index 2d28cf71..6b1e2dad 100644 --- a/content/2.defense-systems/pd-lambda-1.md +++ b/content/2.defense-systems/pd-lambda-1.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 1323 genomes *Proportion of genome encoding the PD-Lambda-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-Lambda-1 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-1/PD-Lambda-1__PD-Lambda-1-plddts_85.64965.pdb +--- +:: + ## Experimental validation PD-Lambda-1 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-lambda-2.md b/content/2.defense-systems/pd-lambda-2.md index 15f2f182..a2c6bd45 100644 --- a/content/2.defense-systems/pd-lambda-2.md +++ b/content/2.defense-systems/pd-lambda-2.md @@ -32,6 +32,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 122 genomes *Proportion of genome encoding the PD-Lambda-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-Lambda-2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-2/PD-Lambda-2,PD-Lambda-2__PD-Lambda-2_A,0,V-plddts_84.87041.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-2/PD-Lambda-2,PD-Lambda-2__PD-Lambda-2_B,0,V-plddts_82.06596.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-2/PD-Lambda-2,PD-Lambda-2__PD-Lambda-2_C,0,V-plddts_94.25495.pdb +--- +:: + ## Experimental validation PD-Lambda-2 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-lambda-3.md b/content/2.defense-systems/pd-lambda-3.md index 751423dd..c7de32e2 100644 --- a/content/2.defense-systems/pd-lambda-3.md +++ b/content/2.defense-systems/pd-lambda-3.md @@ -32,6 +32,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 74 genomes ( *Proportion of genome encoding the PD-Lambda-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-Lambda-3 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-3/PD-Lambda-3,PD-Lambda-3__PD-Lambda-3_A,0,V-plddts_93.15726.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-3/PD-Lambda-3,PD-Lambda-3__PD-Lambda-3_B,0,V-plddts_92.44549.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-3/PD-Lambda-3,PD-Lambda-3__PD-Lambda-3_C,0,V-plddts_92.92218.pdb +--- +:: + ## Experimental validation PD-Lambda-3 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-lambda-4.md b/content/2.defense-systems/pd-lambda-4.md index 416d9938..b0c6dc61 100644 --- a/content/2.defense-systems/pd-lambda-4.md +++ b/content/2.defense-systems/pd-lambda-4.md @@ -31,6 +31,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 75 genomes ( *Proportion of genome encoding the PD-Lambda-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-Lambda-4 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-4/PD-Lambda-4,PD-Lambda-4__PD-Lambda-4_A,0,V-plddts_84.51259.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-4/PD-Lambda-4,PD-Lambda-4__PD-Lambda-4_B,0,V-plddts_81.06371.pdb +--- +:: + ## Experimental validation PD-Lambda-4 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-lambda-5.md b/content/2.defense-systems/pd-lambda-5.md index 32604e77..41229f6f 100644 --- a/content/2.defense-systems/pd-lambda-5.md +++ b/content/2.defense-systems/pd-lambda-5.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 361 genomes *Proportion of genome encoding the PD-Lambda-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-Lambda-5 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-5/PD-Lambda-5,PD-Lambda-5__PD-Lambda-5_A,0,V-plddts_83.30421.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-5/PD-Lambda-5,PD-Lambda-5__PD-Lambda-5_B,0,V-plddts_90.05221.pdb +--- +:: + ## Experimental validation PD-Lambda-5 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-lambda-6.md b/content/2.defense-systems/pd-lambda-6.md index 6fe30c0b..61f1e615 100644 --- a/content/2.defense-systems/pd-lambda-6.md +++ b/content/2.defense-systems/pd-lambda-6.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 21 genomes ( *Proportion of genome encoding the PD-Lambda-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-Lambda-6 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-lambda-6/PD-Lambda-6__PD-Lambda-6-plddts_89.62781.pdb +--- +:: + ## Experimental validation PD-Lambda-6 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-1.md b/content/2.defense-systems/pd-t4-1.md index 02a95e9c..8bc8b4ff 100644 --- a/content/2.defense-systems/pd-t4-1.md +++ b/content/2.defense-systems/pd-t4-1.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 209 genomes *Proportion of genome encoding the PD-T4-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-1 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-1/PD-T4-1__PD-T4-1-plddts_87.89553.pdb +--- +:: + ## Experimental validation PD-T4-1 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-10.md b/content/2.defense-systems/pd-t4-10.md index 703a26ad..1f678a9b 100644 --- a/content/2.defense-systems/pd-t4-10.md +++ b/content/2.defense-systems/pd-t4-10.md @@ -31,6 +31,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 68 genomes ( *Proportion of genome encoding the PD-T4-10 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-10 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-10/PD-T4-10,PD-T4-10__PD-T4-10_A,0,V-plddts_88.65128.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-10/PD-T4-10,PD-T4-10__PD-T4-10_B,0,V-plddts_88.59779.pdb +--- +:: + ## Experimental validation PD-T4-10 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-2.md b/content/2.defense-systems/pd-t4-2.md index ccf93b28..f6768684 100644 --- a/content/2.defense-systems/pd-t4-2.md +++ b/content/2.defense-systems/pd-t4-2.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 33 genomes ( *Proportion of genome encoding the PD-T4-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-2/PD-T4-2,PD-T4-2__PD-T4-2_A,0,DF-plddts_90.58136.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-2/PD-T4-2,PD-T4-2__PD-T4-2_B,0,DF-plddts_93.48773.pdb +--- +:: + ## Experimental validation PD-T4-2 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-3.md b/content/2.defense-systems/pd-t4-3.md index 49c94b69..215913f8 100644 --- a/content/2.defense-systems/pd-t4-3.md +++ b/content/2.defense-systems/pd-t4-3.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 1313 genomes *Proportion of genome encoding the PD-T4-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-3 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-3/PD-T4-3__PD-T4-3-plddts_88.02514.pdb +--- +:: + ## Experimental validation PD-T4-3 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-4.md b/content/2.defense-systems/pd-t4-4.md index 68953b39..6aca4758 100644 --- a/content/2.defense-systems/pd-t4-4.md +++ b/content/2.defense-systems/pd-t4-4.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 53 genomes ( *Proportion of genome encoding the PD-T4-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-4 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-4/PD-T4-4,PD-T4-4__PD-T4-4_A,0,V-plddts_89.6125.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-4/PD-T4-4,PD-T4-4__PD-T4-4_B,0,V-plddts_92.18973.pdb +--- +:: + ## Experimental validation PD-T4-4 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-5.md b/content/2.defense-systems/pd-t4-5.md index d64a4933..560b59e7 100644 --- a/content/2.defense-systems/pd-t4-5.md +++ b/content/2.defense-systems/pd-t4-5.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 587 genomes *Proportion of genome encoding the PD-T4-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-5 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-5/PD-T4-5__PD-T4-5-plddts_94.58803.pdb +--- +:: + ## Experimental validation PD-T4-5 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-6.md b/content/2.defense-systems/pd-t4-6.md index 59f76420..e834aa47 100644 --- a/content/2.defense-systems/pd-t4-6.md +++ b/content/2.defense-systems/pd-t4-6.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 88 genomes ( *Proportion of genome encoding the PD-T4-6 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-6 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-6/PD-T4-6__PD-T4-6-plddts_84.95824.pdb +--- +:: + ## Experimental validation PD-T4-6 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-7.md b/content/2.defense-systems/pd-t4-7.md index 8042bc4c..e46f5538 100644 --- a/content/2.defense-systems/pd-t4-7.md +++ b/content/2.defense-systems/pd-t4-7.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 156 genomes *Proportion of genome encoding the PD-T4-7 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-7 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-7/PD-T4-7__PD-T4-7-plddts_91.28596.pdb +--- +:: + ## Experimental validation PD-T4-7 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-8.md b/content/2.defense-systems/pd-t4-8.md index d0af03b2..4d11f300 100644 --- a/content/2.defense-systems/pd-t4-8.md +++ b/content/2.defense-systems/pd-t4-8.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 91 genomes ( *Proportion of genome encoding the PD-T4-8 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-8 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-8/PD-T4-8__PD-T4-8-plddts_91.39016.pdb +--- +:: + ## Experimental validation PD-T4-8 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t4-9.md b/content/2.defense-systems/pd-t4-9.md index e490e094..81a13f7c 100644 --- a/content/2.defense-systems/pd-t4-9.md +++ b/content/2.defense-systems/pd-t4-9.md @@ -32,6 +32,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 148 genomes *Proportion of genome encoding the PD-T4-9 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T4-9 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-9/PD-T4-9,PD-T4-9__PD-T4-9_A,0,V-plddts_93.71807.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-9/PD-T4-9,PD-T4-9__PD-T4-9_B,0,V-plddts_71.02357.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t4-9/PD-T4-9,PD-T4-9__PD-T4-9_C,0,V-plddts_93.05735.pdb +--- +:: + ## Experimental validation PD-T4-9 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t7-1.md b/content/2.defense-systems/pd-t7-1.md index 7374c6a0..c6503147 100644 --- a/content/2.defense-systems/pd-t7-1.md +++ b/content/2.defense-systems/pd-t7-1.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 755 genomes *Proportion of genome encoding the PD-T7-1 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T7-1 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t7-1/PD-T7-1__PD-T7-1-plddts_93.91174.pdb +--- +:: + ## Experimental validation PD-T7-1 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t7-2.md b/content/2.defense-systems/pd-t7-2.md index 08b19589..544e68ed 100644 --- a/content/2.defense-systems/pd-t7-2.md +++ b/content/2.defense-systems/pd-t7-2.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 1535 genomes *Proportion of genome encoding the PD-T7-2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T7-2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t7-2/PD-T7-2,PD-T7-2__PD-T7-2_A,0,V-plddts_90.8134.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t7-2/PD-T7-2,PD-T7-2__PD-T7-2_B,0,V-plddts_86.88934.pdb +--- +:: + ## Experimental validation PD-T7-2 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t7-3.md b/content/2.defense-systems/pd-t7-3.md index f7451c72..384105bc 100644 --- a/content/2.defense-systems/pd-t7-3.md +++ b/content/2.defense-systems/pd-t7-3.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 215 genomes *Proportion of genome encoding the PD-T7-3 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T7-3 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t7-3/PD-T7-3__PD-T7-3-plddts_89.74752.pdb +--- +:: + ## Experimental validation PD-T7-3 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t7-4.md b/content/2.defense-systems/pd-t7-4.md index a9e79b6b..31491196 100644 --- a/content/2.defense-systems/pd-t7-4.md +++ b/content/2.defense-systems/pd-t7-4.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 501 genomes *Proportion of genome encoding the PD-T7-4 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T7-4 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t7-4/PD-T7-4__PD-T7-4-plddts_93.28251.pdb +--- +:: + ## Experimental validation PD-T7-4 systems were experimentally validated using: diff --git a/content/2.defense-systems/pd-t7-5.md b/content/2.defense-systems/pd-t7-5.md index 908910e3..d81d2f10 100644 --- a/content/2.defense-systems/pd-t7-5.md +++ b/content/2.defense-systems/pd-t7-5.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 363 genomes *Proportion of genome encoding the PD-T7-5 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PD-T7-5 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pd-t7-5/PD-T7-5__PD-T7-5-plddts_92.01228.pdb +--- +:: + ## Experimental validation PD-T7-5 systems were experimentally validated using: diff --git a/content/2.defense-systems/pfiat.md b/content/2.defense-systems/pfiat.md index c12e0eaa..17e9dd27 100644 --- a/content/2.defense-systems/pfiat.md +++ b/content/2.defense-systems/pfiat.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 819 genomes *Proportion of genome encoding the PfiAT system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PfiAT + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pfiat/PfiAT,PfiAT__PfiA,0,V-plddts_95.62475.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pfiat/PfiAT,PfiAT__PfiT,0,V-plddts_94.1034.pdb +--- +:: + ## Relevant abstracts ::article-doi-list diff --git a/content/2.defense-systems/pif.md b/content/2.defense-systems/pif.md index 35f6104d..7c1c8a34 100644 --- a/content/2.defense-systems/pif.md +++ b/content/2.defense-systems/pif.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 143 genomes *Proportion of genome encoding the Pif system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Pif + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pif/Pif,Pif__PifA,0,V-plddts_83.95828.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pif/Pif,Pif__PifC,0,V-plddts_91.50188.pdb +--- +:: + ## Experimental validation Pif systems were experimentally validated using: diff --git a/content/2.defense-systems/prrc.md b/content/2.defense-systems/prrc.md index 2149d38b..c764a66e 100644 --- a/content/2.defense-systems/prrc.md +++ b/content/2.defense-systems/prrc.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 705 genomes *Proportion of genome encoding the PrrC system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PrrC + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /prrc/PrrC__EcoprrI-plddts_91.30003.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /prrc/PrrC__PrrC-plddts_86.4815.pdb +--- +:: + ## Experimental validation PrrC systems were experimentally validated using: diff --git a/content/2.defense-systems/psyrta.md b/content/2.defense-systems/psyrta.md index 57f20a11..0d21d162 100644 --- a/content/2.defense-systems/psyrta.md +++ b/content/2.defense-systems/psyrta.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 1435 genomes *Proportion of genome encoding the PsyrTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### PsyrTA + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /psyrta/PsyrTA,PsyrTA__PsyrA,0,V-plddts_88.4921.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /psyrta/PsyrTA,PsyrTA__PsyrT,0,V-plddts_88.00999.pdb +--- +:: + ## Experimental validation PsyrTA systems were experimentally validated using: diff --git a/content/2.defense-systems/pycsar.md b/content/2.defense-systems/pycsar.md index 14cf0141..2295f18e 100644 --- a/content/2.defense-systems/pycsar.md +++ b/content/2.defense-systems/pycsar.md @@ -32,6 +32,40 @@ Among the 22k complete genomes of RefSeq, this system is present in 559 genomes *Proportion of genome encoding the Pycsar system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Pycsar + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pycsar/Pycsar,CBASS__TIR,0,V-plddts_90.36719.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pycsar/Pycsar,Pycsar__AG_cyclase,0,V-plddts_94.90778.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pycsar/Pycsar,CBASS__TIR,0,V-plddts_90.36719.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /pycsar/Pycsar,Pycsar__AG_cyclase,0,V-plddts_94.90778.pdb +--- +:: + ## Experimental validation Pycsar systems were experimentally validated using: diff --git a/content/2.defense-systems/radar.md b/content/2.defense-systems/radar.md index 4305d715..34512c8b 100644 --- a/content/2.defense-systems/radar.md +++ b/content/2.defense-systems/radar.md @@ -44,6 +44,47 @@ Among the 22k complete genomes of RefSeq, this system is present in 135 genomes *Proportion of genome encoding the RADAR system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### radar_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /radar/radar_I,radar_I__rdrA_I,0,V-plddts_84.65854.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /radar/radar_I,radar_I__rdrB_I,0,V-plddts_87.10562.pdb +--- +:: + +### radar_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /radar/radar_II,radar_II__rdrA_II,0,V-plddts_84.35322.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /radar/radar_II,radar_II__rdrB_II,0,V-plddts_86.83828.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /radar/radar_II,radar_II__rdrC_II,0,V-plddts_75.42507.pdb +--- +:: + ## Experimental validation RADAR systems were experimentally validated using: diff --git a/content/2.defense-systems/retron.md b/content/2.defense-systems/retron.md index 88699293..8989bf1a 100644 --- a/content/2.defense-systems/retron.md +++ b/content/2.defense-systems/retron.md @@ -92,6 +92,204 @@ Among the 22k complete genomes of RefSeq, this system is present in 2601 genomes *Proportion of genome encoding the Retron system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Retron_II + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_II,Retron_II__NDT,Ec73,V-plddts_91.19742.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_II,Retron__RT_Tot,Ec73,V-plddts_94.26558.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_II,Retron_II__NDT,Ec73,V-plddts_91.19742.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_II,Retron__RT_Tot,Ec73,V-plddts_94.26558.pdb +--- +:: + +### Retron_III + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_III,Retron_III__PRTase,0,DF-plddts_93.05385.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_III,Retron_III__WH,0,DF-plddts_81.40731.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_III,Retron__RT_Tot,0,DF-plddts_95.80558.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_III,Retron_III__PRTase,0,DF-plddts_93.05385.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_III,Retron_III__WH,0,DF-plddts_81.40731.pdb +--- +:: + +### Retron_IV + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_IV,Retron_IV__2TM,Ec48,V-plddts_90.18352.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_IV,Retron__RT_Tot,Ec48,V-plddts_92.96552.pdb +--- +:: + +### Retron_I_A + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_A.Retron_I_A__HNH_TIGR02646.Ec78.V-plddts_94.92113.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_A.Retron_I_A__HNH_TIGR02646.Ec83.V-plddts_95.89569.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_A.Retron_I_A__HNH_TIGR02646.Vc95.V-plddts_96.13478.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_A.Retron_I_A__HNH_TIGR02646.Ec78.V-plddts_94.92113.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_A.Retron_I_A__HNH_TIGR02646.Ec83.V-plddts_95.89569.pdb +--- +:: + +Example 3: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_A.Retron_I_A__HNH_TIGR02646.Ec78.V-plddts_94.92113.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_A.Retron_I_A__HNH_TIGR02646.Ec83.V-plddts_95.89569.pdb +--- +:: + +### Retron_I_B + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_B,Retron_I_B__ATPase_TOPRIM_COG3593,Eco8,V-plddts_86.92789.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_I_B,Retron__RT_Tot,Eco8,V-plddts_93.00774.pdb +--- +:: + +### Retron_VI + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_VI,Possible_Retron_VI__SP,0,DF-plddts_81.90355.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_VI,Retron_VI__HTH,0,DF-plddts_86.36271.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_VI,Retron__RT_Tot,0,DF-plddts_95.37927.pdb +--- +:: + +### Retron_VII_2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_VII_2,Retron_VII_2__DUF3800,0,DF-plddts_91.55254.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /retron/Retron_VII_2,Retron__RT_Tot,0,DF-plddts_95.60845.pdb +--- +:: + ## Experimental validation Retron systems were experimentally validated using: diff --git a/content/2.defense-systems/rexab.md b/content/2.defense-systems/rexab.md index 23efd871..c024bad1 100644 --- a/content/2.defense-systems/rexab.md +++ b/content/2.defense-systems/rexab.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 73 genomes ( *Proportion of genome encoding the RexAB system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### RexAB + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rexab/RexAB,RexAB_RexA,0,V-plddts_80.37265.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rexab/RexAB,RexAB_RexB,0,V-plddts_87.11344.pdb +--- +:: + ## Experimental validation RexAB systems were experimentally validated using: diff --git a/content/2.defense-systems/rloc.md b/content/2.defense-systems/rloc.md index 5b7db799..08c68439 100644 --- a/content/2.defense-systems/rloc.md +++ b/content/2.defense-systems/rloc.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 1961 genomes *Proportion of genome encoding the RloC system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### RloC + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rloc/RloC__RloC-plddts_86.73175.pdb +--- +:: + ## Experimental validation RloC systems were experimentally validated using: diff --git a/content/2.defense-systems/rm.md b/content/2.defense-systems/rm.md index aa420662..6b6e3672 100644 --- a/content/2.defense-systems/rm.md +++ b/content/2.defense-systems/rm.md @@ -48,6 +48,98 @@ Among the 22k complete genomes of RefSeq, this system is present in 19087 genome *Proportion of genome encoding the RM system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### DISARM_1 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_1,DISARM_1__drmD,0,DF-plddts_85.45851.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_1,DISARM_1__drmMI,0,DF-plddts_86.22485.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_1,DISARM__drmA,0,DF-plddts_88.08452.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_1,DISARM__drmB,0,DF-plddts_88.41231.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_1,DISARM__drmC,0,DF-plddts_93.3381.pdb +--- +:: + +### DISARM_2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_2,DISARM_2__drmE,0,V-plddts_88.46395.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_2,DISARM_2__drmMII,0,V-plddts_92.6996.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_2,DISARM__drmA,0,V-plddts_87.64454.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_2,DISARM__drmB,0,V-plddts_89.69894.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/DISARM_2,DISARM__drmC,0,V-plddts_87.93933.pdb +--- +:: + +### RM + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/RM__Type_I_REases-plddts_86.33796.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rm/RM__Type_I_S-plddts_91.98582.pdb +--- +:: + ## Relevant abstracts ::article-doi-list diff --git a/content/2.defense-systems/rnlab.md b/content/2.defense-systems/rnlab.md index 19f5afb7..40d6e745 100644 --- a/content/2.defense-systems/rnlab.md +++ b/content/2.defense-systems/rnlab.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 284 genomes *Proportion of genome encoding the RnlAB system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### RnlAB + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rnlab/RnlAB,RnlAB__RnlA,0,DF-plddts_91.3649.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rnlab/RnlAB,RnlAB__RnlB,0,DF-plddts_92.42543.pdb +--- +:: + ## Experimental validation RnlAB systems were experimentally validated using: diff --git a/content/2.defense-systems/rosmerta.md b/content/2.defense-systems/rosmerta.md index 8cb81a2e..34276f8a 100644 --- a/content/2.defense-systems/rosmerta.md +++ b/content/2.defense-systems/rosmerta.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 2124 genomes *Proportion of genome encoding the RosmerTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### RosmerTA + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rosmerta/RosmerTA,RosmerTA__RmrA,0,V-plddts_88.40961.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rosmerta/RosmerTA,RosmerTA__RmrT,0,V-plddts_84.3404.pdb +--- +:: + ## Experimental validation RosmerTA systems were experimentally validated using: diff --git a/content/2.defense-systems/rst_2tm_1tm_tir.md b/content/2.defense-systems/rst_2tm_1tm_tir.md index 533f30ce..a796abfb 100644 --- a/content/2.defense-systems/rst_2tm_1tm_tir.md +++ b/content/2.defense-systems/rst_2tm_1tm_tir.md @@ -29,6 +29,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 2 genomes (0 *Proportion of genome encoding the Rst_2TM_1TM_TIR system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_2TM_1TM_TIR + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR,Rst_2TM_1TM_TIR__Rst_1TM_TIR,0,V-plddts_90.66226.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR,Rst_2TM_1TM_TIR__Rst_2TM_TIR,0,V-plddts_78.12882.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_2tm_1tm_tir/Rst_2TM_1TM_TIR,Rst_2TM_1TM_TIR__Rst_TIR_tm,0,V-plddts_67.05466.pdb +--- +:: + ## Relevant abstracts ::article-doi-list diff --git a/content/2.defense-systems/rst_3hp.md b/content/2.defense-systems/rst_3hp.md index b31ab1f8..22d65162 100644 --- a/content/2.defense-systems/rst_3hp.md +++ b/content/2.defense-systems/rst_3hp.md @@ -31,6 +31,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 420 genomes *Proportion of genome encoding the Rst_3HP system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_3HP + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_3hp/Rst_3HP,Rst_3HP__Hp1,0,V-plddts_92.97739.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_3hp/Rst_3HP,Rst_3HP__Hp2,0,V-plddts_89.72402.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_3hp/Rst_3HP,Rst_3HP__Hp3,0,V-plddts_95.1843.pdb +--- +:: + ## Experimental validation Rst_3HP systems were experimentally validated using: diff --git a/content/2.defense-systems/rst_duf4238.md b/content/2.defense-systems/rst_duf4238.md index 95ba0b60..f3c19395 100644 --- a/content/2.defense-systems/rst_duf4238.md +++ b/content/2.defense-systems/rst_duf4238.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 46 genomes ( *Proportion of genome encoding the Rst_DUF4238 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_DUF4238 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_duf4238/Rst_DUF4238__DUF4238_Pers-plddts_94.11236.pdb +--- +:: + ## Experimental validation Rst_DUF4238 systems were experimentally validated using: diff --git a/content/2.defense-systems/rst_gop_beta_cll.md b/content/2.defense-systems/rst_gop_beta_cll.md index 3d11950e..b15037c0 100644 --- a/content/2.defense-systems/rst_gop_beta_cll.md +++ b/content/2.defense-systems/rst_gop_beta_cll.md @@ -32,6 +32,31 @@ Among the 22k complete genomes of RefSeq, this system is present in 37 genomes ( *Proportion of genome encoding the Rst_gop_beta_cll system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_gop_beta_cll + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_gop_beta_cll/Rst_gop_beta_cll,Rst_gop_beta_cll__beta,0,V-plddts_93.90323.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_gop_beta_cll/Rst_gop_beta_cll,Rst_gop_beta_cll__cll,0,V-plddts_87.60729.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_gop_beta_cll/Rst_gop_beta_cll,Rst_gop_beta_cll__gop,0,V-plddts_74.94876.pdb +--- +:: + ## Experimental validation Rst_gop_beta_cll systems were experimentally validated using: diff --git a/content/2.defense-systems/rst_helicaseduf2290.md b/content/2.defense-systems/rst_helicaseduf2290.md index ed03b133..340a87a5 100644 --- a/content/2.defense-systems/rst_helicaseduf2290.md +++ b/content/2.defense-systems/rst_helicaseduf2290.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 211 genomes *Proportion of genome encoding the Rst_HelicaseDUF2290 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_HelicaseDUF2290 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_helicaseduf2290/Rst_HelicaseDUF2290,Rst_HelicaseDUF2290__DUF2290,0,V-plddts_90.99466.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_helicaseduf2290/Rst_HelicaseDUF2290,Rst_HelicaseDUF2290__Helicase,0,V-plddts_87.6023.pdb +--- +:: + ## Experimental validation Rst_HelicaseDUF2290 systems were experimentally validated using: diff --git a/content/2.defense-systems/rst_hydrolase-3tm.md b/content/2.defense-systems/rst_hydrolase-3tm.md index de568982..60d9dcd6 100644 --- a/content/2.defense-systems/rst_hydrolase-3tm.md +++ b/content/2.defense-systems/rst_hydrolase-3tm.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 42 genomes ( *Proportion of genome encoding the Rst_Hydrolase-3Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_Hydrolase-Tm + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_hydrolase-3tm/Rst_Hydrolase-Tm,Rst_Hydrolase-Tm__Hydrolase,0,V-plddts_94.5717.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_hydrolase-3tm/Rst_Hydrolase-Tm,Rst_Hydrolase-Tm__Hydrolase-Tm,0,V-plddts_87.29824.pdb +--- +:: + ## Experimental validation Rst_Hydrolase-3Tm systems were experimentally validated using: diff --git a/content/2.defense-systems/rst_rt-nitrilase-tm.md b/content/2.defense-systems/rst_rt-nitrilase-tm.md index fe87e58f..05cf85fd 100644 --- a/content/2.defense-systems/rst_rt-nitrilase-tm.md +++ b/content/2.defense-systems/rst_rt-nitrilase-tm.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 25 genomes ( *Proportion of genome encoding the Rst_RT-nitrilase-Tm system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_RT-Tm + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_rt-nitrilase-tm/Rst_RT-Tm,Rst_RT-Tm__RT,0,V-plddts_91.31746.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_rt-nitrilase-tm/Rst_RT-Tm,Rst_RT-Tm__RT-Tm,0,V-plddts_89.04275.pdb +--- +:: + ## Experimental validation Rst_RT-nitrilase-Tm systems were experimentally validated using: diff --git a/content/2.defense-systems/rst_tir-nlr.md b/content/2.defense-systems/rst_tir-nlr.md index d07a33c7..6a945f90 100644 --- a/content/2.defense-systems/rst_tir-nlr.md +++ b/content/2.defense-systems/rst_tir-nlr.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 254 genomes *Proportion of genome encoding the Rst_TIR-NLR system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Rst_TIR-NLR + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /rst_tir-nlr/Rst_TIR-NLR__TIR-plddts_88.48123.pdb +--- +:: + ## Experimental validation Rst_TIR-NLR systems were experimentally validated using: diff --git a/content/2.defense-systems/sanata.md b/content/2.defense-systems/sanata.md index d032f257..46672030 100644 --- a/content/2.defense-systems/sanata.md +++ b/content/2.defense-systems/sanata.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 1071 genomes *Proportion of genome encoding the SanaTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### SanaTA + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sanata/SanaTA,SanaTA_SanaA,0,V-plddts_86.02229.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sanata/SanaTA,SanaTA_SanaT,0,V-plddts_94.5954.pdb +--- +:: + ## Experimental validation SanaTA systems were experimentally validated using: diff --git a/content/2.defense-systems/sefir.md b/content/2.defense-systems/sefir.md index 5d3f6d7a..73620142 100644 --- a/content/2.defense-systems/sefir.md +++ b/content/2.defense-systems/sefir.md @@ -40,6 +40,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 377 genomes *Proportion of genome encoding the SEFIR system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### SEFIR + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sefir/SEFIR__bSEFIR-plddts_89.61831.pdb +--- +:: + ## Experimental validation SEFIR systems were experimentally validated using: diff --git a/content/2.defense-systems/septu.md b/content/2.defense-systems/septu.md index 5f7a8218..49af871a 100644 --- a/content/2.defense-systems/septu.md +++ b/content/2.defense-systems/septu.md @@ -32,6 +32,40 @@ Among the 22k complete genomes of RefSeq, this system is present in 2193 genomes *Proportion of genome encoding the Septu system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Septu + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /septu/Septu,Septu__PtuA,0,V-plddts_89.78955.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /septu/Septu,Septu__PtuB,0,V-plddts_95.05244.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /septu/Septu,Septu__PtuA,0,V-plddts_89.78955.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /septu/Septu,Septu__PtuB,0,V-plddts_95.05244.pdb +--- +:: + ## Experimental validation Septu systems were experimentally validated using: diff --git a/content/2.defense-systems/shango.md b/content/2.defense-systems/shango.md index fd02239b..cd60b454 100644 --- a/content/2.defense-systems/shango.md +++ b/content/2.defense-systems/shango.md @@ -43,6 +43,33 @@ Among the 22k complete genomes of RefSeq, this system is present in 1112 genomes *Proportion of genome encoding the Shango system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Shango + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /shango/Shango.Shango__SngC.0.V-plddts_90.0493.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /shango/Shango.Shango__SngC.0.V-plddts_90.0493.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /shango/Shango,Shango__SngA,0,V-plddts_78.29927.pdb +--- +:: + ## Experimental validation Shango systems were experimentally validated using: diff --git a/content/2.defense-systems/shedu.md b/content/2.defense-systems/shedu.md index 0c365cb3..b62c67d3 100644 --- a/content/2.defense-systems/shedu.md +++ b/content/2.defense-systems/shedu.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 899 genomes *Proportion of genome encoding the Shedu system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Shedu + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /shedu/Shedu__SduA-plddts_87.27097.pdb +--- +:: + ## Experimental validation Shedu systems were experimentally validated using: diff --git a/content/2.defense-systems/shosta.md b/content/2.defense-systems/shosta.md index 02640091..1c22370c 100644 --- a/content/2.defense-systems/shosta.md +++ b/content/2.defense-systems/shosta.md @@ -32,6 +32,24 @@ Among the 22k complete genomes of RefSeq, this system is present in 668 genomes *Proportion of genome encoding the ShosTA system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### ShosTA + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /shosta/ShosTA,ShosTA__ShosA,0,V-plddts_93.0196.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /shosta/ShosTA,ShosTA__ShosT,0,V-plddts_91.38081.pdb +--- +:: + ## Experimental validation ShosTA systems were experimentally validated using: diff --git a/content/2.defense-systems/sofic.md b/content/2.defense-systems/sofic.md index a8d3ab59..f80ef865 100644 --- a/content/2.defense-systems/sofic.md +++ b/content/2.defense-systems/sofic.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 2265 genomes *Proportion of genome encoding the SoFIC system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### SoFic + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sofic/SoFic__SoFic-plddts_95.70819.pdb +--- +:: + ## Experimental validation SoFIC systems were experimentally validated using: diff --git a/content/2.defense-systems/spbk.md b/content/2.defense-systems/spbk.md index f43df459..306154ed 100644 --- a/content/2.defense-systems/spbk.md +++ b/content/2.defense-systems/spbk.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 219 genomes *Proportion of genome encoding the SpbK system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### SpbK + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /spbk/SpbK__SpbK-plddts_78.5012.pdb +--- +:: + ## Experimental validation SpbK systems were experimentally validated using: diff --git a/content/2.defense-systems/sspbcde.md b/content/2.defense-systems/sspbcde.md index c79f2d34..3ca9d525 100644 --- a/content/2.defense-systems/sspbcde.md +++ b/content/2.defense-systems/sspbcde.md @@ -32,6 +32,82 @@ Among the 22k complete genomes of RefSeq, this system is present in 579 genomes *Proportion of genome encoding the SspBCDE system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### SspBCDE + +Example 1: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspB,0,V-plddts_92.59451.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspC,0,V-plddts_85.51697.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspD,0,V-plddts_87.41069.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspE,0,V-plddts_88.74902.pdb +--- +:: + +Example 2: +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspB,0,V-plddts_92.59451.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspC,0,V-plddts_85.51697.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspD,0,V-plddts_87.41069.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspE,0,V-plddts_88.74902.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspB,1,V-plddts_92.38727.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /sspbcde/SspBCDE,SspBCDE__SspC,1,V-plddts_84.03334.pdb +--- +:: + ## Experimental validation SspBCDE systems were experimentally validated using: diff --git a/content/2.defense-systems/stk2.md b/content/2.defense-systems/stk2.md index e9e59a5d..33133713 100644 --- a/content/2.defense-systems/stk2.md +++ b/content/2.defense-systems/stk2.md @@ -41,6 +41,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 141 genomes *Proportion of genome encoding the Stk2 system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Stk2 + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /stk2/Stk2__Stk2-plddts_91.79541.pdb +--- +:: + ## Experimental validation Stk2 systems were experimentally validated using: diff --git a/content/2.defense-systems/thoeris.md b/content/2.defense-systems/thoeris.md index be35be5d..c1c446d0 100644 --- a/content/2.defense-systems/thoeris.md +++ b/content/2.defense-systems/thoeris.md @@ -36,6 +36,40 @@ Among the 22k complete genomes of RefSeq, this system is present in 812 genomes *Proportion of genome encoding the Thoeris system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Thoeris_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /thoeris/Thoeris_I,Thoeris_I__ThsA_new_grand,0,V-plddts_93.92302.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /thoeris/Thoeris_I,Thoeris__ThsB_Global,0,V-plddts_90.12702.pdb +--- +:: + +### Thoeris_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /thoeris/Thoeris_II,Thoeris_II__ThsA_new_petit,0,V-plddts_88.7532.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /thoeris/Thoeris_II,Thoeris__ThsB_Global,0,V-plddts_93.32159.pdb +--- +:: + ## Experimental validation Thoeris systems were experimentally validated using: diff --git a/content/2.defense-systems/tiamat.md b/content/2.defense-systems/tiamat.md index bafd49c3..f69fb816 100644 --- a/content/2.defense-systems/tiamat.md +++ b/content/2.defense-systems/tiamat.md @@ -32,6 +32,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 342 genomes *Proportion of genome encoding the Tiamat system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Tiamat + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /tiamat/Tiamat__TmtA-plddts_86.46392.pdb +--- +:: + ## Experimental validation Tiamat systems were experimentally validated using: diff --git a/content/2.defense-systems/uzume.md b/content/2.defense-systems/uzume.md index 11e72a49..bc73e6d0 100644 --- a/content/2.defense-systems/uzume.md +++ b/content/2.defense-systems/uzume.md @@ -31,6 +31,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 125 genomes *Proportion of genome encoding the Uzume system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Uzume + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /uzume/Uzume__UzmA-plddts_94.2491.pdb +--- +:: + ## Experimental validation Uzume systems were experimentally validated using: diff --git a/content/2.defense-systems/viperin.md b/content/2.defense-systems/viperin.md index 4ac98994..5be58fd3 100644 --- a/content/2.defense-systems/viperin.md +++ b/content/2.defense-systems/viperin.md @@ -49,6 +49,17 @@ Among the 22k complete genomes of RefSeq, this system is present in 118 genomes *Proportion of genome encoding the Viperin system for the 14 phyla with more than 50 genomes in the RefSeq database.* +## Structure + +### Viperin + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /viperin/Viperin__pVip-plddts_95.08271.pdb +--- +:: + ## Experimental validation Viperin systems were experimentally validated using: diff --git a/content/2.defense-systems/wadjet.md b/content/2.defense-systems/wadjet.md index a6e65810..b9da0f29 100644 --- a/content/2.defense-systems/wadjet.md +++ b/content/2.defense-systems/wadjet.md @@ -40,6 +40,98 @@ Among the 22k complete genomes of RefSeq, this system is present in 2380 genomes *Proportion of genome encoding the Wadjet system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Wadjet_I + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_I,Wadjet__JetA_I,0,V-plddts_85.26647.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_I,Wadjet__JetB_I,0,V-plddts_87.82736.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_I,Wadjet__JetC_I,0,V-plddts_84.15592.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_I,Wadjet__JetD_I,0,V-plddts_93.08112.pdb +--- +:: + +### Wadjet_II + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_II,Wadjet__JetA_II,0,V-plddts_85.37749.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_II,Wadjet__JetB_II,0,V-plddts_94.08089.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_II,Wadjet__JetC_II,0,V-plddts_84.09293.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_II,Wadjet__JetD_II,0,V-plddts_92.28569.pdb +--- +:: + +### Wadjet_III + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_III,Wadjet__JetA_III,0,V-plddts_80.48148.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_III,Wadjet__JetB_III,0,V-plddts_80.7136.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_III,Wadjet__JetC_III,0,V-plddts_83.96933.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /wadjet/Wadjet_III,Wadjet__JetD_III,0,V-plddts_91.07357.pdb +--- +:: + ## Relevant abstracts ::article-doi-list diff --git a/content/2.defense-systems/zorya.md b/content/2.defense-systems/zorya.md index 007f41ab..ef0760a8 100644 --- a/content/2.defense-systems/zorya.md +++ b/content/2.defense-systems/zorya.md @@ -36,6 +36,61 @@ Among the 22k complete genomes of RefSeq, this system is present in 840 genomes *Proportion of genome encoding the Zorya system for the 14 phyla with more than 50 genomes in the RefSeq database.* *Pie chart of the repartition of all the subsystems found in the RefSeq database.* +## Structure + +### Zorya_TypeI + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /zorya/Zorya_TypeI,Zorya_TypeI__ZorC,0,V-plddts_85.7807.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /zorya/Zorya_TypeI,Zorya_TypeI__ZorD,0,V-plddts_80.74261.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /zorya/Zorya_TypeI,Zorya__ZorA,0,V-plddts_72.58295.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /zorya/Zorya_TypeI,Zorya__ZorB,0,V-plddts_88.9782.pdb +--- +:: + +### Zorya_TypeII + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /zorya/Zorya_TypeII,Zorya_TypeII__ZorE,0,V-plddts_88.59937.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /zorya/Zorya_TypeII,Zorya__ZorA,0,V-plddts_77.19519.pdb +--- +:: + +::molstar-pdbe-plugin +--- +height: 700 +dataUrl: /zorya/Zorya_TypeII,Zorya__ZorB,0,V-plddts_91.39341.pdb +--- +:: + ## Experimental validation Zorya systems were experimentally validated using: -- GitLab