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pfam PF13394 do not match any entry

    • Open Issue created by Remi PLANEL @rplanel

    cf. dpd

    Edited by Remi PLANEL

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      2. Activity

      • Remi PLANEL assigned to @jcury

        assigned to @jcury

      • Remi PLANEL changed the description

        changed the description

      • Jean CURY
        Jean CURY @jcury ·
        Owner

        in the table ? It's in the one attached.

        There is only 15 lines in ./public/pfam-a-hmm.csv which is not good. There are >20k lines in the one attached

        Pfam-A.hmm.dat.csv

      • Remi PLANEL
        Remi PLANEL @rplanel ·
        Author Maintainer

        Actually it is not in the one attached, neither in interpro website.

        Edited by Remi PLANEL
      • Jean CURY
        Jean CURY @jcury ·
        Owner

        ah sorry I was not checking the good PF number

      • Jean CURY
        Jean CURY @jcury ·
        Owner

        ah it's because is an obsolete one : https://www.ebi.ac.uk/interpro/entry/pfam/PF13394/

        just drop it

      • Remi PLANEL
        Remi PLANEL @rplanel ·
        Author Maintainer

        Also, all these files are listed in statistics file but does not exist.

        file BREX_II.BREX__brxHI.0.DF-plddts_87.30384.html does not exist
 file BREX_II.BREX__brxD.0.DF-plddts_91.09635.html does not exist
 file BREX_III.BREX__brxHII.0.DF-plddts_84.67824.html does not exist
 file BREX_V.BREX__pglZA.0.DF-plddts_89.56545.html does not exist
 file CBASS_II.CBASS__Cyclase_II.0.V-plddts_92.98717.html does not exist
 file CBASS_III.CBASS__Cyclase_II.0.V-plddts_92.98717.html does not exist
 file DISARM_1.DISARM__drmC.0.DF-plddts_85.20186.html does not exist
 file DISARM_1.DISARM__drmB.0.DF-plddts_90.0653.html does not exist
 file DISARM_2.DISARM__drmA.0.V-plddts_88.20075.html does not exist
 file Dazbog.Dazbog__DzbA.0.V-plddts_86.32505.html does not exist
 file Dazbog.Dazbog__DzbB.0.V-plddts_92.46405.html does not exist
 file Detocs_hydrolase__dtcC-plddts_89.47253.html does not exist
 file Dnd_ABCDE.Dnd__DndB.0.DF-plddts_94.50742.html does not exist
 file Dnd_ABCDEFGH.Dnd__DndA.0.DF-plddts_93.55282.html does not exist
 file Dnd_ABCDEFGH.Dnd__DndC.0.DF-plddts_88.84977.html does not exist
 file Dnd_ABCDEFGH.Dnd__DndD.0.DF-plddts_87.6958.html does not exist
 file Dnd_ABCDEFGH.Dnd__DndE.0.DF-plddts_93.93156.html does not exist
 file ISG15-like.ISG15-like__BilD.0.V-plddts_93.49493.html does not exist
 file ISG15-like.ISG15-like__BilC.0.V-plddts_95.55499.html does not exist
 file ISG15-like.ISG15-like__BilB.0.V-plddts_95.45496.html does not exist
 file ISG15-like.ISG15-like__BilA.0.V-plddts_90.0993.html does not exist
 file ISG15-like.ISG15-like__BilD.1.V-plddts_93.49493.html does not exist
 file ISG15-like.ISG15-like__BilC.1.V-plddts_95.55499.html does not exist
 file ISG15-like.ISG15-like__BilB.1.V-plddts_95.45496.html does not exist
 file ISG15-like.ISG15-like__BilA.1.V-plddts_90.0993.html does not exist
 file ISG15-like.ISG15-like__BilB.2.V-plddts_95.45496.html does not exist
 file ISG15-like.ISG15-like__BilD.2.V-plddts_93.49493.html does not exist
 file ISG15-like.ISG15-like__BilA.3.V-plddts_90.0993.html does not exist
 file ISG15-like.ISG15-like__BilB.3.V-plddts_95.45496.html does not exist
 file ISG15-like.ISG15-like__BilC.3.V-plddts_95.55499.html does not exist
 file ISG15-like.ISG15-like__BilA.4.V-plddts_90.0993.html does not exist
 file ISG15-like.ISG15-like__BilC.4.V-plddts_95.55499.html does not exist
 file ISG15-like.ISG15-like__BilD.4.V-plddts_93.49493.html does not exist
 file Mokosh_TypeI.Mokosh_TypeI__MkoB.1.V-plddts_91.43435.html does not exist
 file PARIS_II.Rst_PARIS__DUF4435.0.V-plddts_90.4483.html does not exist
 file Pycsar.Pycsar__AG_cyclase.0.V-plddts_87.16581.html does not exist
 file RT_Ec67_SLATT.DRT_3__drt3a.Ec67.V-plddts_91.54077.html does not exist
 file Retron_II.Retron_II__NDT.Ec86.V-plddts_91.28865.html does not exist
 file Retron_I_A.Retron_I_A__ATPase_TypeIA.Ec83.V-plddts_88.63185.html does not exist
 file Retron_I_A.Retron__RT_Tot.Vc95.V-plddts_95.10599.html does not exist
 file Septu.Septu__PtuA.0.V-plddts_83.1088.html does not exist
 file Septu.Septu__PtuB.0.V-plddts_95.09855.html does not exist
 file SspBCDE.SspBCDE__SspC.0.V-plddts_85.42554.html does not exist
 file SspBCDE.SspBCDE__SspB.0.V-plddts_92.7244.html does not exist
 file SspBCDE.SspBCDE__SspD.1.V-plddts_86.98506.html does not exist
 file Thoeris_II.Thoeris__ThsB_Global.0.V-plddts_87.05513.html does not exist
 file Zorya_TypeI.Zorya__ZorA.0.V-plddts_79.04389.html does not exist
 file Zorya_TypeII.Zorya__ZorB.0.V-plddts_88.19228.html does not exist

        It seems that the pdddts value is not correct

        Edited by Remi PLANEL
      • Jean CURY
        Jean CURY @jcury ·
        Owner

        hmm, indeed, do you think you could take the file that have the same start (without the plddt score), and check first that it's unique. If there are multiple, drop it and log it, if there is one, take this one

      • Jean CURY
        Jean CURY @jcury ·
        Owner

        should we close this issue @rplanel ?

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