diff --git a/metaphlan3/README.md b/metaphlan3/README.md new file mode 100644 index 0000000000000000000000000000000000000000..7b721ea4ca88200bfb2544d358257d63fe36771e --- /dev/null +++ b/metaphlan3/README.md @@ -0,0 +1,20 @@ +# Metaphlan3 and StrainPhlan3 + +## Install + +> You need to perform install from the head of submission (tars-0) since an internet connection is needed + +[Instructions here](https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-3.0#installation), in brief what has been done: + +```bash +conda create --name mpa -c bioconda python=3.7 metaphlan +conda activate mpa # or source activate mpa +metaphlan --install # install db +``` + +## Run + +You can try the following tutorials: + +* [Metaphlan3](https://github.com/biobakery/MetaPhlAn/wiki/MetaPhlAn-3.0#basic-usage) +* [StrainPhlan3](https://github.com/biobakery/MetaPhlAn/wiki/StrainPhlAn-3.0#usage)