| ... | ... | @@ -10,14 +10,19 @@ You can create a test database using the API directly and some test files availa |
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> 💬 *You can use directly the [documentation page](http://localhost/docs) to run the different commands.*
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### 📔 Entities
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Title | route | input path
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----- | ----- | ----------
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Create KEGG database | `/api/admin_db/create_kegg_ko` | no input file necessary, process is quick for all KEGG KO.
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NCBI taxonomy | `/api/admin_db/create_ncbi_taxonomy` | `https://gitlab.pasteur.fr/metagenomics/fastgenes/-/raw/25-gene-annotations/data_test/ncbi_taxonomy/taxdump.tar.gz?inline=false`
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NCBI taxonomy hierarchy | `/api/admin_db/generate_ncbi_taxonomy_hierarchy` | No file necessary, based on existing db
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### 📕 Genes
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Genes | `/api/admin_db/create_genes` | `https://gitlab.pasteur.fr/metagenomics/fastgenes/-/raw/25-gene-annotations/data_test/genes/genes.fa?inline=false`
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#### 💀 Deprecated way
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### 💀 Deprecated way
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From `backend/app` directory:
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| ... | ... | @@ -27,11 +32,18 @@ poetry run create_test_db |
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## 🐔 Populate DB with real data
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### 📔 Entities
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Title | route | input path
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----- | ----- | ----------
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Create KEGG database | `/api/admin_db/create_kegg_ko` | no input file necessary, process is quick for all KEGG KO.
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NCBI taxonomy | `/api/admin_db/create_ncbi_taxonomy` | `https://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz`
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NCBI taxonomy hierarchy | `/api/admin_db/generate_ncbi_taxonomy_hierarchy` | No file necessary, based on existing db
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### 📕 Genes
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Title | route | input path
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----- | ----- | ----------
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Genes | `/api/admin_db/create_genes` | Link to your fasta file
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## 📂 Empty DB
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