Commits · dev · Metagenomics / FastGenes

Mar 11, 2022
- Merge branch '25-gene-annotations' into 'dev' · 61fa5c59
  Kenzo-Hugo Hillion authored Mar 11, 2022
```
gene annotations from csv file

Closes #25

See merge request !16
```
  61fa5c59
- fix ncbi taxonomy annotations · 3e0f1a41
  Kenzo-Hugo Hillion authored Mar 11, 2022
  
  3e0f1a41
- fix quality · 5de3192a
  Kenzo-Hugo Hillion authored Mar 11, 2022
  
  5de3192a
- add notebook example for annotation creation · 4bb26401
  Kenzo-Hugo Hillion authored Mar 11, 2022
  
  4bb26401
- fix tests · 9e7d63fc
  Kenzo-Hugo Hillion authored Mar 11, 2022
  
  9e7d63fc
Mar 10, 2022
- continue method to create kegg annotations · 31cefa7d
  Kenzo-Hugo Hillion authored Mar 10, 2022
  
  31cefa7d
Mar 09, 2022
- fix quality · 192809a2
  Kenzo-Hugo Hillion authored Mar 09, 2022
  
  192809a2
- add repo to retrieve db IDs · 4c724360
  Kenzo-Hugo Hillion authored Mar 09, 2022
  
  4c724360
- add kegg annotation test file · aa8f92df
  Kenzo-Hugo Hillion authored Mar 09, 2022
  
  aa8f92df
Mar 07, 2022
- fix quality · 108b62c0
  Kenzo-Hugo Hillion authored Mar 07, 2022
  
  108b62c0
- changes in annotation.py · 21bda712
  Kenzo-Hugo Hillion authored Mar 07, 2022
  
  21bda712
Feb 22, 2022
- add healthy check for docker compose · eb167ece
  Kenzo-Hugo Hillion authored Feb 22, 2022
  
  eb167ece
Feb 21, 2022
- update to python 3.9 on CI · 4a87352d
  Kenzo-Hugo Hillion authored Feb 21, 2022
  
  4a87352d
Feb 18, 2022
- Merge branch '25-gene-annotations' into 'dev' · d438ae42
  Kenzo-Hugo Hillion authored Feb 18, 2022
```
Test files and documentation

See merge request !14
```
  d438ae42
- update README · 9b3c0074
  Kenzo-Hugo Hillion authored Feb 18, 2022
```
more docs

more docs
```
  9b3c0074
- comment deployment and update README · 3e77354f
  Kenzo-Hugo Hillion authored Feb 18, 2022
```
update README
```
  3e77354f
- This is a combination of 2 commits. · a6581f37
  Kenzo-Hugo Hillion authored Feb 18, 2022
```
update README

fix link README
```
  a6581f37
- Merge branch 'dev' into 25-gene-annotations · 6ce5b629
  Kenzo-Hugo Hillion authored Feb 18, 2022
  
  6ce5b629
- fix results for workers · 262b8eca
  Kenzo-Hugo Hillion authored Feb 18, 2022
  
  262b8eca
Feb 17, 2022
- use bitnami images · a6670b20
  Kenzo-Hugo Hillion authored Feb 16, 2022
```
update userid k8s

update script path backend
```
  a6670b20
Feb 16, 2022
- try reduce k8s resources · 6329d857
  Kenzo-Hugo Hillion authored Feb 16, 2022
```
update k8s conf

update securityContext

drop user postgres

user 999 postgres
```
  6329d857
Feb 15, 2022
- First try set up deployment · 07d827f2
  Kenzo-Hugo Hillion authored Feb 15, 2022
```
no before script deploy
```
  07d827f2
- try to fix build backend · d532d144
  Kenzo-Hugo Hillion authored Feb 15, 2022
```
add build emoji

fix build emoji

more emoji to CI
```
  d532d144
- build backend on CI · 8ea0ec54
  Kenzo-Hugo Hillion authored Feb 15, 2022
  
  8ea0ec54
Jan 20, 2022
- change format result task to list · fc7e94bf
  Kenzo-Hugo Hillion authored Jan 20, 2022
  
  fc7e94bf
Jan 19, 2022
- fix quality · f3b3bd2a
  Kenzo-Hugo Hillion authored Jan 19, 2022
  
  f3b3bd2a
- Merge branch 'dev' into 25-gene-annotations · 9668a3d6
  Kenzo-Hugo Hillion authored Jan 19, 2022
  
  9668a3d6
- Merge branch '2-attach-frontend' into 'dev' · 2cf8d674
  Kenzo-Hugo Hillion authored Jan 19, 2022
```
Set up frontend from metagenedb

Closes #2

See merge request !15
```
  2cf8d674
- Set up frontend from metagenedb · ac6f8c69
  Kenzo-Hugo Hillion authored Jan 19, 2022
  
  ac6f8c69
Jan 14, 2022
- starting modifying DBcreation schema · b19dd29a
  Kenzo-Hugo Hillion authored Jan 14, 2022
  
  b19dd29a
- prepare file for annotation tests · 13e96714
  Kenzo-Hugo Hillion authored Jan 14, 2022
  
  13e96714
Jan 13, 2022
- starting annotation use case · 1f09bdab
  Kenzo-Hugo Hillion authored Jan 13, 2022
  
  1f09bdab
- add skipped field for DB operation schema · 109a7652
  Kenzo-Hugo Hillion authored Jan 13, 2022
  
  109a7652
Jan 12, 2022
- add genes · 5548d27c
  Kenzo-Hugo Hillion authored Jan 12, 2022
```
mv genes
```
  5548d27c
- fix quality · 3eb8f1fa
  Kenzo-Hugo Hillion authored Jan 12, 2022
  
  3eb8f1fa
- update tree test for NCBI taxonomy data · 6936c22d
  Kenzo-Hugo Hillion authored Jan 12, 2022
  
  6936c22d
- test file for NCBI taxonomy · 3f50e48d
  Kenzo-Hugo Hillion authored Jan 12, 2022
  
  3f50e48d
- Merge branch '1-alembic-migrations' into 'dev' · 0a3f6d18
  Kenzo-Hugo Hillion authored Jan 12, 2022
```
DB migrations with alembic

Closes #22 and #1

See merge request !13
```
  0a3f6d18
- update README · e13c1130
  Kenzo-Hugo Hillion authored Jan 12, 2022
  
  e13c1130
- run migration on startup of app and add init migration · e2eeb95c
  Kenzo-Hugo Hillion authored Jan 12, 2022
  
  e2eeb95c