diff --git a/backend/Pipfile b/backend/Pipfile
index cda25f153d7cd56639cfe19d9f8845069cefa754..bd9c93b47bdcfa40e58706d9916a10fb471f5b84 100644
--- a/backend/Pipfile
+++ b/backend/Pipfile
@@ -61,6 +61,7 @@ django-pandas = "*"
bioapi = {git = "https://github.com/khillion/bioapi.git"}
django-admin-list-filter-dropdown = "*"
gunicorn = "*"
+pyfastx = "*"
[requires]
python_version = "3.7"
diff --git a/backend/Pipfile.lock b/backend/Pipfile.lock
index 85a326432080bf5b6374c86980b31c04d30a2c50..8650568a20d8f86afe71e047db85f0898cb983cb 100644
--- a/backend/Pipfile.lock
+++ b/backend/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "a537f0bc55008c51fb8a1e1193186dac3c57c78e9bf579b283775b7de8a5f791"
+ "sha256": "1d936f5c462daf6117f9f94b59599097d1aefa89bdf51bc289a953b7196c45bf"
},
"pipfile-spec": 6,
"requires": {
@@ -59,11 +59,11 @@
},
"django": {
"hashes": [
- "sha256:315b11ea265dd15348d47f2cbb044ef71da2018f6e582fed875c889758e6f844",
- "sha256:b61295749be7e1c42467c55bcabdaee9fbe9496fdf9ed2e22cef44d9de2ff953"
+ "sha256:2f1ba1db8648484dd5c238fb62504777b7ad090c81c5f1fd8d5eb5ec21b5f283",
+ "sha256:c91c91a7ad6ef67a874a4f76f58ba534f9208412692a840e1d125eb5c279cb0a"
],
"index": "pypi",
- "version": "==3.0.1"
+ "version": "==3.0.3"
},
"django-admin-list-filter-dropdown": {
"hashes": [
@@ -75,11 +75,11 @@
},
"django-cors-headers": {
"hashes": [
- "sha256:84933651fbbde8f2bc084bef2f077b79db1ec1389432f21dd661eaae6b3d6a95",
- "sha256:a8b2772582e8025412f4d4b54b617d8b707076ffd53a2b961bd24f10ec207a7c"
+ "sha256:a5960addecc04527ab26617e51b8ed42f0adab4594b24bb0f3c33e2bd3857c3f",
+ "sha256:a785b5f446f6635810776d9f5f5d23e6a2a2f728ea982648370afaf0dfdf2627"
],
"index": "pypi",
- "version": "==3.2.0"
+ "version": "==3.2.1"
},
"django-environ": {
"hashes": [
@@ -91,11 +91,11 @@
},
"django-extensions": {
"hashes": [
- "sha256:a9db7c56a556d244184f589f2437b4228de86ee45e5ebb837fb20c6d54e95ea5",
- "sha256:b58320d3fe3d6ae7d1d8e38959713fa92272f4921e662d689058d942a5b444f7"
+ "sha256:4524eca892d23fa6e93b0620901983b287ff5dc806f1b978d6a98541f06b9471",
+ "sha256:936e8e3962024d3c75ea54f4e0248002404ca7ca7fb698430e60b06b5555b4e7"
],
"index": "pypi",
- "version": "==2.2.5"
+ "version": "==2.2.6"
},
"django-filter": {
"hashes": [
@@ -167,10 +167,10 @@
},
"jinja2": {
"hashes": [
- "sha256:74320bb91f31270f9551d46522e33af46a80c3d619f4a4bf42b3164d30b5911f",
- "sha256:9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de"
+ "sha256:93187ffbc7808079673ef52771baa950426fd664d3aad1d0fa3e95644360e250",
+ "sha256:b0eaf100007721b5c16c1fc1eecb87409464edc10469ddc9a22a27a99123be49"
],
- "version": "==2.10.3"
+ "version": "==2.11.1"
},
"markupsafe": {
"hashes": [
@@ -178,13 +178,16 @@
"sha256:09027a7803a62ca78792ad89403b1b7a73a01c8cb65909cd876f7fcebd79b161",
"sha256:09c4b7f37d6c648cb13f9230d847adf22f8171b1ccc4d5682398e77f40309235",
"sha256:1027c282dad077d0bae18be6794e6b6b8c91d58ed8a8d89a89d59693b9131db5",
+ "sha256:13d3144e1e340870b25e7b10b98d779608c02016d5184cfb9927a9f10c689f42",
"sha256:24982cc2533820871eba85ba648cd53d8623687ff11cbb805be4ff7b4c971aff",
"sha256:29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b",
"sha256:43a55c2930bbc139570ac2452adf3d70cdbb3cfe5912c71cdce1c2c6bbd9c5d1",
"sha256:46c99d2de99945ec5cb54f23c8cd5689f6d7177305ebff350a58ce5f8de1669e",
"sha256:500d4957e52ddc3351cabf489e79c91c17f6e0899158447047588650b5e69183",
"sha256:535f6fc4d397c1563d08b88e485c3496cf5784e927af890fb3c3aac7f933ec66",
+ "sha256:596510de112c685489095da617b5bcbbac7dd6384aeebeda4df6025d0256a81b",
"sha256:62fe6c95e3ec8a7fad637b7f3d372c15ec1caa01ab47926cfdf7a75b40e0eac1",
+ "sha256:6788b695d50a51edb699cb55e35487e430fa21f1ed838122d722e0ff0ac5ba15",
"sha256:6dd73240d2af64df90aa7c4e7481e23825ea70af4b4922f8ede5b9e35f78a3b1",
"sha256:717ba8fe3ae9cc0006d7c451f0bb265ee07739daf76355d06366154ee68d221e",
"sha256:79855e1c5b8da654cf486b830bd42c06e8780cea587384cf6545b7d9ac013a0b",
@@ -201,17 +204,19 @@
"sha256:ba59edeaa2fc6114428f1637ffff42da1e311e29382d81b339c1817d37ec93c6",
"sha256:c8716a48d94b06bb3b2524c2b77e055fb313aeb4ea620c8dd03a105574ba704f",
"sha256:cd5df75523866410809ca100dc9681e301e3c27567cf498077e8551b6d20e42f",
- "sha256:e249096428b3ae81b08327a63a485ad0878de3fb939049038579ac0ef61e17e7"
+ "sha256:cdb132fc825c38e1aeec2c8aa9338310d29d337bebbd7baa06889d09a60a1fa2",
+ "sha256:e249096428b3ae81b08327a63a485ad0878de3fb939049038579ac0ef61e17e7",
+ "sha256:e8313f01ba26fbbe36c7be1966a7b7424942f670f38e666995b88d012765b9be"
],
"version": "==1.1.1"
},
"marshmallow": {
"hashes": [
- "sha256:0ba81b6da4ae69eb229b74b3c741ff13fe04fb899824377b1aff5aaa1a9fd46e",
- "sha256:3e53dd9e9358977a3929e45cdbe4a671f9eff53a7d6a23f33ed3eab8c1890d8f"
+ "sha256:7669b944d6233b81f68739d5826f1176c3841cc31cf6b856841083b5a72f5ca9",
+ "sha256:c9d277f6092f32300395fb83d343be9f61b5e99d66d22bae1e5e7cd82608fee6"
],
"index": "pypi",
- "version": "==3.3.0"
+ "version": "==3.4.0"
},
"metagenedb": {
"editable": true,
@@ -219,63 +224,58 @@
},
"numpy": {
"hashes": [
- "sha256:0a7a1dd123aecc9f0076934288ceed7fd9a81ba3919f11a855a7887cbe82a02f",
- "sha256:0c0763787133dfeec19904c22c7e358b231c87ba3206b211652f8cbe1241deb6",
- "sha256:3d52298d0be333583739f1aec9026f3b09fdfe3ddf7c7028cb16d9d2af1cca7e",
- "sha256:43bb4b70585f1c2d153e45323a886839f98af8bfa810f7014b20be714c37c447",
- "sha256:475963c5b9e116c38ad7347e154e5651d05a2286d86455671f5b1eebba5feb76",
- "sha256:64874913367f18eb3013b16123c9fed113962e75d809fca5b78ebfbb73ed93ba",
- "sha256:683828e50c339fc9e68720396f2de14253992c495fdddef77a1e17de55f1decc",
- "sha256:6ca4000c4a6f95a78c33c7dadbb9495c10880be9c89316aa536eac359ab820ae",
- "sha256:75fd817b7061f6378e4659dd792c84c0b60533e867f83e0d1e52d5d8e53df88c",
- "sha256:7d81d784bdbed30137aca242ab307f3e65c8d93f4c7b7d8f322110b2e90177f9",
- "sha256:8d0af8d3664f142414fd5b15cabfd3b6cc3ef242a3c7a7493257025be5a6955f",
- "sha256:9679831005fb16c6df3dd35d17aa31dc0d4d7573d84f0b44cc481490a65c7725",
- "sha256:a8f67ebfae9f575d85fa859b54d3bdecaeece74e3274b0b5c5f804d7ca789fe1",
- "sha256:acbf5c52db4adb366c064d0b7c7899e3e778d89db585feadd23b06b587d64761",
- "sha256:ada4805ed51f5bcaa3a06d3dd94939351869c095e30a2b54264f5a5004b52170",
- "sha256:c7354e8f0eca5c110b7e978034cd86ed98a7a5ffcf69ca97535445a595e07b8e",
- "sha256:e2e9d8c87120ba2c591f60e32736b82b67f72c37ba88a4c23c81b5b8fa49c018",
- "sha256:e467c57121fe1b78a8f68dd9255fbb3bb3f4f7547c6b9e109f31d14569f490c3",
- "sha256:ede47b98de79565fcd7f2decb475e2dcc85ee4097743e551fe26cfc7eb3ff143",
- "sha256:f58913e9227400f1395c7b800503ebfdb0772f1c33ff8cb4d6451c06cabdf316",
- "sha256:fe39f5fd4103ec4ca3cb8600b19216cd1ff316b4990f4c0b6057ad982c0a34d5"
+ "sha256:1786a08236f2c92ae0e70423c45e1e62788ed33028f94ca99c4df03f5be6b3c6",
+ "sha256:17aa7a81fe7599a10f2b7d95856dc5cf84a4eefa45bc96123cbbc3ebc568994e",
+ "sha256:20b26aaa5b3da029942cdcce719b363dbe58696ad182aff0e5dcb1687ec946dc",
+ "sha256:2d75908ab3ced4223ccba595b48e538afa5ecc37405923d1fea6906d7c3a50bc",
+ "sha256:39d2c685af15d3ce682c99ce5925cc66efc824652e10990d2462dfe9b8918c6a",
+ "sha256:56bc8ded6fcd9adea90f65377438f9fea8c05fcf7c5ba766bef258d0da1554aa",
+ "sha256:590355aeade1a2eaba17617c19edccb7db8d78760175256e3cf94590a1a964f3",
+ "sha256:70a840a26f4e61defa7bdf811d7498a284ced303dfbc35acb7be12a39b2aa121",
+ "sha256:77c3bfe65d8560487052ad55c6998a04b654c2fbc36d546aef2b2e511e760971",
+ "sha256:9537eecf179f566fd1c160a2e912ca0b8e02d773af0a7a1120ad4f7507cd0d26",
+ "sha256:9acdf933c1fd263c513a2df3dceecea6f3ff4419d80bf238510976bf9bcb26cd",
+ "sha256:ae0975f42ab1f28364dcda3dde3cf6c1ddab3e1d4b2909da0cb0191fa9ca0480",
+ "sha256:b3af02ecc999c8003e538e60c89a2b37646b39b688d4e44d7373e11c2debabec",
+ "sha256:b6ff59cee96b454516e47e7721098e6ceebef435e3e21ac2d6c3b8b02628eb77",
+ "sha256:b765ed3930b92812aa698a455847141869ef755a87e099fddd4ccf9d81fffb57",
+ "sha256:c98c5ffd7d41611407a1103ae11c8b634ad6a43606eca3e2a5a269e5d6e8eb07",
+ "sha256:cf7eb6b1025d3e169989416b1adcd676624c2dbed9e3bcb7137f51bfc8cc2572",
+ "sha256:d92350c22b150c1cae7ebb0ee8b5670cc84848f6359cf6b5d8f86617098a9b73",
+ "sha256:e422c3152921cece8b6a2fb6b0b4d73b6579bd20ae075e7d15143e711f3ca2ca",
+ "sha256:e840f552a509e3380b0f0ec977e8124d0dc34dc0e68289ca28f4d7c1d0d79474",
+ "sha256:f3d0a94ad151870978fb93538e95411c83899c9dc63e6fb65542f769568ecfa5"
],
"index": "pypi",
- "version": "==1.17.4"
+ "version": "==1.18.1"
},
"packaging": {
"hashes": [
- "sha256:28b924174df7a2fa32c1953825ff29c61e2f5e082343165438812f00d3a7fc47",
- "sha256:d9551545c6d761f3def1677baf08ab2a3ca17c56879e70fecba2fc4dde4ed108"
+ "sha256:170748228214b70b672c581a3dd610ee51f733018650740e98c7df862a583f73",
+ "sha256:e665345f9eef0c621aa0bf2f8d78cf6d21904eef16a93f020240b704a57f1334"
],
"index": "pypi",
- "version": "==19.2"
+ "version": "==20.1"
},
"pandas": {
"hashes": [
- "sha256:00dff3a8e337f5ed7ad295d98a31821d3d0fe7792da82d78d7fd79b89c03ea9d",
- "sha256:22361b1597c8c2ffd697aa9bf85423afa9e1fcfa6b1ea821054a244d5f24d75e",
- "sha256:255920e63850dc512ce356233081098554d641ba99c3767dde9e9f35630f994b",
- "sha256:26382aab9c119735908d94d2c5c08020a4a0a82969b7e5eefb92f902b3b30ad7",
- "sha256:33970f4cacdd9a0ddb8f21e151bfb9f178afb7c36eb7c25b9094c02876f385c2",
- "sha256:4545467a637e0e1393f7d05d61dace89689ad6d6f66f267f86fff737b702cce9",
- "sha256:52da74df8a9c9a103af0a72c9d5fdc8e0183a90884278db7f386b5692a2220a4",
- "sha256:61741f5aeb252f39c3031d11405305b6d10ce663c53bc3112705d7ad66c013d0",
- "sha256:6a3ac2c87e4e32a969921d1428525f09462770c349147aa8e9ab95f88c71ec71",
- "sha256:7458c48e3d15b8aaa7d575be60e1e4dd70348efcd9376656b72fecd55c59a4c3",
- "sha256:78bf638993219311377ce9836b3dc05f627a666d0dbc8cec37c0ff3c9ada673b",
- "sha256:8153705d6545fd9eb6dd2bc79301bff08825d2e2f716d5dced48daafc2d0b81f",
- "sha256:975c461accd14e89d71772e89108a050fa824c0b87a67d34cedf245f6681fc17",
- "sha256:9962957a27bfb70ab64103d0a7b42fa59c642fb4ed4cb75d0227b7bb9228535d",
- "sha256:adc3d3a3f9e59a38d923e90e20c4922fc62d1e5a03d083440468c6d8f3f1ae0a",
- "sha256:bbe3eb765a0b1e578833d243e2814b60c825b7fdbf4cdfe8e8aae8a08ed56ecf",
- "sha256:df8864824b1fe488cf778c3650ee59c3a0d8f42e53707de167ba6b4f7d35f133",
- "sha256:e45055c30a608076e31a9fcd780a956ed3b1fa20db61561b8d88b79259f526f7",
- "sha256:ee50c2142cdcf41995655d499a157d0a812fce55c97d9aad13bc1eef837ed36c"
+ "sha256:18bbce2e69855d42397486ee0bb79cb0e4c94af6679fd9392e32ffdb7fcfade0",
+ "sha256:35d07389efaf3c478d93725a226941c7fc14714814ba77d6d43b2c9e63ef4af5",
+ "sha256:3ea6cc86931f57f18b1240572216f09922d91b19ab8a01cf24734394a3db3bec",
+ "sha256:46b0a146e4ba744e350847244767ef297950e9ce02424734b2dd0befd77d9aff",
+ "sha256:66c1a49b47c0953dbc6864a6d2578c4c24610f6bb8e4ab165d49b8371aa7745f",
+ "sha256:6d5c2d2a3e42100700bac7fe762c17ba0a04d0355feac04bce74a1aa6c8be164",
+ "sha256:ab1aa2c50b7c6ba0eccebb146b4d80ed7f5804897b8d54ccddbe49f28c881a94",
+ "sha256:ae1ec10e34d22b0f699e38f346381630cae89d5050a2a61315a2be09e3435f99",
+ "sha256:b578df33338a09707bfe3e3939c9d46700948133bf829357c3c46795055c9376",
+ "sha256:bad77cf498362590ef3a30bc9e769f4fe4399d853861a1ddbefeea8cbf39906c",
+ "sha256:c36e4d44d34eaa503776a8fb57ba1305e680e178458c050c2fd8de67604fa209",
+ "sha256:d76a8ec22adf0323d362dac8c900b2c66e06eab984ecf04ef072866d8ab6c538",
+ "sha256:e8be4f6da608930c0d565240bfbe04fc6f5764d6a9214b02c6231cd5e223591d",
+ "sha256:f66c63f357ac31c913f4917f55348ce99c639031567c3284f01dff605da58264"
],
"index": "pypi",
- "version": "==0.25.3"
+ "version": "==1.0.0"
},
"psycopg2": {
"hashes": [
@@ -296,6 +296,41 @@
"index": "pypi",
"version": "==2.8.4"
},
+ "pyfastx": {
+ "hashes": [
+ "sha256:0591e6eae1bfa0b810869c53b9568d617d3e3958716aafafb67a0966c60aefc2",
+ "sha256:083decb8842aadf2f45f62ad24bae177c2cdd513fe87dd7c3a3ef1ef9d10165e",
+ "sha256:106739aa435fddfb5bd2b5decc7944d3d60781eead76db33223e98e6f2efe44e",
+ "sha256:1a046a7e9be2c2e61b8681856bb73bea6a3e0bdd13bb8d80e435afc5142373fa",
+ "sha256:51f35810d8838fe11f9f59c453abb6f339e02c43e6ae06c5869aa7d34eea0bb7",
+ "sha256:5af16d9fdf87eccc8eb2ecab5443471df024d34aed0b383ddc982b856ab568d8",
+ "sha256:5e83aa11a3ed0cdf8861845be1f15bc20a4dff18421b4ab41121d5ef0799eec8",
+ "sha256:5f1c69e2e3ea2ff57e8c0549e3c2f217ea2abf65fe0c6581cee97b62bc893eff",
+ "sha256:5feed90623534aa13a28da59c2f139d5bba11a759957ced9d106095183d6b280",
+ "sha256:728429244168d828661e40dcf38a42fa43511fbffa935b82de6906441fdc4fa2",
+ "sha256:79f252f6c8591524828233727b519dab1151fed978d44579222f1bb70a8a43cc",
+ "sha256:8012bb110f5c2699daf605af1454caa770f3f83bcc83881b8c69c556ea3cd52b",
+ "sha256:a9c179806d3c1e424701e80145bee9feaac624044a00f41e317d4ac3e40a3c51",
+ "sha256:aa27439c0677cf720c66e4651a8d1bdc31d68c6befd832a5f32cadfb2ae548e6",
+ "sha256:aadf1d72c6cd551f89eb0c413ab32debe5e2fa0e339538cd25e1844023c1f494",
+ "sha256:ae4b8f7d36377b4a9f061989e3180dc05123aacfc8d60ad7c89493a879fced22",
+ "sha256:bd685d9a7c34664a99ddf5003c831fa09e746fc7284bf79e14c5d0069a2c62af",
+ "sha256:c0c95252198f07727b4aa28bce34034116db6cc80825a88965ad95207d925a61",
+ "sha256:c65b0d7eab325b1e000619c6c98bd45a43ac84b2766209ef50dc96fd5959d425",
+ "sha256:c8536017acec478da300f99ed21b2efa5dc88b0230ddd1f0347eaf40808c86cc",
+ "sha256:c8e1256c5f24fb1ba98a528b38898c8c67e362df056a135bb0bce5a7059db3c0",
+ "sha256:cfbe01aba992565126b7320020bfdf07ef86f1459a02c2637074fed8e6c1d72f",
+ "sha256:d25e0d5e6a1977211be5c5b30619a187decba421c6edb854d1627f817862cdc8",
+ "sha256:d5ee6dc33ce948fea5f78602305e30204b3c9f0c13aa9eaf926084ae94c67e16",
+ "sha256:dc1fb97ab79155ff69180f50a3fc3e8fc8f09ada4fce981ae791c65dea91bb5b",
+ "sha256:df4378b8c0efe960c267c52dab34c74f0784b70afef048658f29171bafb2cddb",
+ "sha256:e0a03ec92994c5f1e5cfb192adbb81e5f0bab28929d60ac0fbf4db7c17bccdac",
+ "sha256:e4154e8f0c95f2abc02047ae262cb6e354bf8ec9377994fbb96afee5887a7ba5",
+ "sha256:f82e078b8e892a0d1839610fd66df3fbaf1c165b2e554bdb7d46bb815dc5c487"
+ ],
+ "index": "pypi",
+ "version": "==0.6.5"
+ },
"pyjwt": {
"hashes": [
"sha256:5c6eca3c2940464d106b99ba83b00c6add741c9becaec087fb7ccdefea71350e",
@@ -306,10 +341,10 @@
},
"pyparsing": {
"hashes": [
- "sha256:20f995ecd72f2a1f4bf6b072b63b22e2eb457836601e76d6e5dfcd75436acc1f",
- "sha256:4ca62001be367f01bd3e92ecbb79070272a9d4964dce6a48a82ff0b8bc7e683a"
+ "sha256:4c830582a84fb022400b85429791bc551f1f4871c33f23e44f353119e92f969f",
+ "sha256:c342dccb5250c08d45fd6f8b4a559613ca603b57498511740e65cd11a2e7dcec"
],
- "version": "==2.4.5"
+ "version": "==2.4.6"
},
"python-dateutil": {
"hashes": [
@@ -344,10 +379,10 @@
},
"ruamel.yaml": {
"hashes": [
- "sha256:0db639b1b2742dae666c6fc009b8d1931ef15c9276ef31c0673cc6dcf766cf40",
- "sha256:412a6f5cfdc0525dee6a27c08f5415c7fd832a7afcb7a0ed7319628aed23d408"
+ "sha256:9d59fa89985c55155d35c886663e357813404ae8f94638cb673135b8c8c1a7c7",
+ "sha256:dba517a7e330b6caf476b757022d21efa13c32694bfba1e057ce59a374f18f0a"
],
- "version": "==0.16.5"
+ "version": "==0.16.7"
},
"ruamel.yaml.clib": {
"hashes": [
@@ -376,11 +411,11 @@
},
"six": {
"hashes": [
- "sha256:1f1b7d42e254082a9db6279deae68afb421ceba6158efa6131de7b3003ee93fd",
- "sha256:30f610279e8b2578cab6db20741130331735c781b56053c59c4076da27f06b66"
+ "sha256:236bdbdce46e6e6a3d61a337c0f8b763ca1e8717c03b369e87a7ec7ce1319c0a",
+ "sha256:8f3cd2e254d8f793e7f3d6d9df77b92252b52637291d0f0da013c76ea2724b6c"
],
"index": "pypi",
- "version": "==1.13.0"
+ "version": "==1.14.0"
},
"sqlparse": {
"hashes": [
@@ -399,19 +434,18 @@
},
"uritemplate": {
"hashes": [
- "sha256:01c69f4fe8ed503b2951bef85d996a9d22434d2431584b5b107b2981ff416fbd",
- "sha256:1b9c467a940ce9fb9f50df819e8ddd14696f89b9a8cc87ac77952ba416e0a8fd",
- "sha256:c02643cebe23fc8adb5e6becffe201185bf06c40bda5c0b4028a93f1527d011d"
+ "sha256:07620c3f3f8eed1f12600845892b0e036a2420acf513c53f7de0abd911a5894f",
+ "sha256:5af8ad10cec94f215e3f48112de2022e1d5a37ed427fbd88652fa908f2ab7cae"
],
- "version": "==3.0.0"
+ "version": "==3.0.1"
},
"urllib3": {
"hashes": [
- "sha256:a8a318824cc77d1fd4b2bec2ded92646630d7fe8619497b142c84a9e6f5a7293",
- "sha256:f3c5fd51747d450d4dcf6f923c81f78f811aab8205fda64b0aba34a4e48b0745"
+ "sha256:2f3db8b19923a873b3e5256dc9c2dedfa883e33d87c690d9c7913e1f40673cdc",
+ "sha256:87716c2d2a7121198ebcb7ce7cccf6ce5e9ba539041cfbaeecfb641dc0bf6acc"
],
"index": "pypi",
- "version": "==1.25.7"
+ "version": "==1.25.8"
}
},
"develop": {
@@ -462,40 +496,40 @@
},
"coverage": {
"hashes": [
- "sha256:0cd13a6e98c37b510a2d34c8281d5e1a226aaf9b65b7d770ef03c63169965351",
- "sha256:1a4b6b6a2a3a6612e6361130c2cc3dc4378d8c221752b96167ccbad94b47f3cd",
- "sha256:2ee55e6dba516ddf6f484aa83ccabbb0adf45a18892204c23486938d12258cde",
- "sha256:3be5338a2eb4ef03c57f20917e1d12a1fd10e3853fed060b6d6b677cb3745898",
- "sha256:44b783b02db03c4777d8cf71bae19eadc171a6f2a96777d916b2c30a1eb3d070",
- "sha256:475bf7c4252af0a56e1abba9606f1e54127cdf122063095c75ab04f6f99cf45e",
- "sha256:47c81ee687eafc2f1db7f03fbe99aab81330565ebc62fb3b61edfc2216a550c8",
- "sha256:4a7f8e72b18f2aca288ff02255ce32cc830bc04d993efbc87abf6beddc9e56c0",
- "sha256:50197163a22fd17f79086e087a787883b3ec9280a509807daf158dfc2a7ded02",
- "sha256:56b13000acf891f700f5067512b804d1ec8c301d627486c678b903859d07f798",
- "sha256:79388ae29c896299b3567965dbcd93255f175c17c6c7bca38614d12718c47466",
- "sha256:79fd5d3d62238c4f583b75d48d53cdae759fe04d4fb18fe8b371d88ad2b6f8be",
- "sha256:7fe3e2fde2bf1d7ce25ebcd2d3de3650b8d60d9a73ce6dcef36e20191291613d",
- "sha256:81042a24f67b96e4287774014fa27220d8a4d91af1043389e4d73892efc89ac6",
- "sha256:81326f1095c53111f8afc95da281e1414185f4a538609a77ca50bdfa39a6c207",
- "sha256:8873dc0d8f42142ea9f20c27bbdc485190fff93823c6795be661703369e5877d",
- "sha256:88d2cbcb0a112f47eef71eb95460b6995da18e6f8ca50c264585abc2c473154b",
- "sha256:91f2491aeab9599956c45a77c5666d323efdec790bfe23fcceafcd91105d585a",
- "sha256:979daa8655ae5a51e8e7a24e7d34e250ae8309fd9719490df92cbb2fe2b0422b",
- "sha256:9c871b006c878a890c6e44a5b2f3c6291335324b298c904dc0402ee92ee1f0be",
- "sha256:a6d092545e5af53e960465f652e00efbf5357adad177b2630d63978d85e46a72",
- "sha256:b5ed7837b923d1d71c4f587ae1539ccd96bfd6be9788f507dbe94dab5febbb5d",
- "sha256:ba259f68250f16d2444cbbfaddaa0bb20e1560a4fdaad50bece25c199e6af864",
- "sha256:be1d89614c6b6c36d7578496dc8625123bda2ff44f224cf8b1c45b810ee7383f",
- "sha256:c1b030a79749aa8d1f1486885040114ee56933b15ccfc90049ba266e4aa2139f",
- "sha256:c95bb147fab76f2ecde332d972d8f4138b8f2daee6c466af4ff3b4f29bd4c19e",
- "sha256:d52c1c2d7e856cecc05aa0526453cb14574f821b7f413cc279b9514750d795c1",
- "sha256:d609a6d564ad3d327e9509846c2c47f170456344521462b469e5cb39e48ba31c",
- "sha256:e1bad043c12fb58e8c7d92b3d7f2f49977dcb80a08a6d1e7a5114a11bf819fca",
- "sha256:e5a675f6829c53c87d79117a8eb656cc4a5f8918185a32fc93ba09778e90f6db",
- "sha256:fec32646b98baf4a22fdceb08703965bd16dea09051fbeb31a04b5b6e72b846c"
+ "sha256:15cf13a6896048d6d947bf7d222f36e4809ab926894beb748fc9caa14605d9c3",
+ "sha256:1daa3eceed220f9fdb80d5ff950dd95112cd27f70d004c7918ca6dfc6c47054c",
+ "sha256:1e44a022500d944d42f94df76727ba3fc0a5c0b672c358b61067abb88caee7a0",
+ "sha256:25dbf1110d70bab68a74b4b9d74f30e99b177cde3388e07cc7272f2168bd1477",
+ "sha256:3230d1003eec018ad4a472d254991e34241e0bbd513e97a29727c7c2f637bd2a",
+ "sha256:3dbb72eaeea5763676a1a1efd9b427a048c97c39ed92e13336e726117d0b72bf",
+ "sha256:5012d3b8d5a500834783689a5d2292fe06ec75dc86ee1ccdad04b6f5bf231691",
+ "sha256:51bc7710b13a2ae0c726f69756cf7ffd4362f4ac36546e243136187cfcc8aa73",
+ "sha256:527b4f316e6bf7755082a783726da20671a0cc388b786a64417780b90565b987",
+ "sha256:722e4557c8039aad9592c6a4213db75da08c2cd9945320220634f637251c3894",
+ "sha256:76e2057e8ffba5472fd28a3a010431fd9e928885ff480cb278877c6e9943cc2e",
+ "sha256:77afca04240c40450c331fa796b3eab6f1e15c5ecf8bf2b8bee9706cd5452fef",
+ "sha256:7afad9835e7a651d3551eab18cbc0fdb888f0a6136169fbef0662d9cdc9987cf",
+ "sha256:9bea19ac2f08672636350f203db89382121c9c2ade85d945953ef3c8cf9d2a68",
+ "sha256:a8b8ac7876bc3598e43e2603f772d2353d9931709345ad6c1149009fd1bc81b8",
+ "sha256:b0840b45187699affd4c6588286d429cd79a99d509fe3de0f209594669bb0954",
+ "sha256:b26aaf69713e5674efbde4d728fb7124e429c9466aeaf5f4a7e9e699b12c9fe2",
+ "sha256:b63dd43f455ba878e5e9f80ba4f748c0a2156dde6e0e6e690310e24d6e8caf40",
+ "sha256:be18f4ae5a9e46edae3f329de2191747966a34a3d93046dbdf897319923923bc",
+ "sha256:c312e57847db2526bc92b9bfa78266bfbaabac3fdcd751df4d062cd4c23e46dc",
+ "sha256:c60097190fe9dc2b329a0eb03393e2e0829156a589bd732e70794c0dd804258e",
+ "sha256:c62a2143e1313944bf4a5ab34fd3b4be15367a02e9478b0ce800cb510e3bbb9d",
+ "sha256:cc1109f54a14d940b8512ee9f1c3975c181bbb200306c6d8b87d93376538782f",
+ "sha256:cd60f507c125ac0ad83f05803063bed27e50fa903b9c2cfee3f8a6867ca600fc",
+ "sha256:d513cc3db248e566e07a0da99c230aca3556d9b09ed02f420664e2da97eac301",
+ "sha256:d649dc0bcace6fcdb446ae02b98798a856593b19b637c1b9af8edadf2b150bea",
+ "sha256:d7008a6796095a79544f4da1ee49418901961c97ca9e9d44904205ff7d6aa8cb",
+ "sha256:da93027835164b8223e8e5af2cf902a4c80ed93cb0909417234f4a9df3bcd9af",
+ "sha256:e69215621707119c6baf99bda014a45b999d37602cb7043d943c76a59b05bf52",
+ "sha256:ea9525e0fef2de9208250d6c5aeeee0138921057cd67fcef90fbed49c4d62d37",
+ "sha256:fca1669d464f0c9831fd10be2eef6b86f5ebd76c724d1e0706ebdff86bb4adf0"
],
"index": "pypi",
- "version": "==5.0"
+ "version": "==5.0.3"
},
"cycler": {
"hashes": [
@@ -537,10 +571,10 @@
},
"faker": {
"hashes": [
- "sha256:202ad3b2ec16ae7c51c02904fb838831f8d2899e61bf18db1e91a5a582feab11",
- "sha256:92c84a10bec81217d9cb554ee12b3838c8986ce0b5d45f72f769da22e4bb5432"
+ "sha256:047d4d1791bfb3756264da670d99df13d799bb36e7d88774b1585a82d05dbaec",
+ "sha256:1b1a58961683b30c574520d0c739c4443e0ef6a185c04382e8cc888273dbebed"
],
- "version": "==3.0.0"
+ "version": "==4.0.0"
},
"flake8": {
"hashes": [
@@ -552,11 +586,11 @@
},
"importlib-metadata": {
"hashes": [
- "sha256:073a852570f92da5f744a3472af1b61e28e9f78ccf0c9117658dc32b15de7b45",
- "sha256:d95141fbfa7ef2ec65cfd945e2af7e5a6ddbd7c8d9a25e66ff3be8e3daf9f60f"
+ "sha256:06f5b3a99029c7134207dd882428a66992a9de2bef7c2b699b5641f9886c3302",
+ "sha256:b97607a1a18a5100839aec1dc26a1ea17ee0d93b20b0f008d80a5a050afb200b"
],
"index": "pypi",
- "version": "==1.3.0"
+ "version": "==1.5.0"
},
"inflection": {
"hashes": [
@@ -566,18 +600,18 @@
},
"ipykernel": {
"hashes": [
- "sha256:1a7def9c986f1ee018c1138d16951932d4c9d4da01dad45f9d34e9899565a22f",
- "sha256:b368ad13edb71fa2db367a01e755a925d7f75ed5e09fbd3f06c85e7a8ef108a8"
+ "sha256:7f1f01df22f1229c8879501057877ccaf92a3b01c1d00db708aad5003e5f9238",
+ "sha256:ba8c9e5561f3223fb47ce06ad7925cb9444337ac367341c0c520ffb68ea6d120"
],
- "version": "==5.1.3"
+ "version": "==5.1.4"
},
"ipython": {
"hashes": [
- "sha256:190a279bd3d4fc585a611e9358a88f1048cc57fd688254a86f9461889ee152a6",
- "sha256:762d79a62b6aa96b04971e920543f558dfbeedc0468b899303c080c8068d4ac2"
+ "sha256:d9459e7237e2e5858738ff9c3e26504b79899b58a6d49e574d352493d80684c6",
+ "sha256:f6689108b1734501d3b59c84427259fd5ac5141afe2e846cfa8598eb811886c9"
],
"markers": "python_version >= '3.3'",
- "version": "==7.10.2"
+ "version": "==7.12.0"
},
"ipython-genutils": {
"hashes": [
@@ -602,17 +636,17 @@
},
"jedi": {
"hashes": [
- "sha256:786b6c3d80e2f06fd77162a07fed81b8baa22dde5d62896a790a331d6ac21a27",
- "sha256:ba859c74fa3c966a22f2aeebe1b74ee27e2a462f56d3f5f7ca4a59af61bfe42e"
+ "sha256:b4f4052551025c6b0b0b193b29a6ff7bdb74c52450631206c262aef9f7159ad2",
+ "sha256:d5c871cb9360b414f981e7072c52c33258d598305280fef91c6cae34739d65d5"
],
- "version": "==0.15.1"
+ "version": "==0.16.0"
},
"jinja2": {
"hashes": [
- "sha256:74320bb91f31270f9551d46522e33af46a80c3d619f4a4bf42b3164d30b5911f",
- "sha256:9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de"
+ "sha256:93187ffbc7808079673ef52771baa950426fd664d3aad1d0fa3e95644360e250",
+ "sha256:b0eaf100007721b5c16c1fc1eecb87409464edc10469ddc9a22a27a99123be49"
],
- "version": "==2.10.3"
+ "version": "==2.11.1"
},
"jsonschema": {
"hashes": [
@@ -639,10 +673,10 @@
},
"jupyter-console": {
"hashes": [
- "sha256:308ce876354924fb6c540b41d5d6d08acfc946984bf0c97777c1ddcb42e0b2f5",
- "sha256:cc80a97a5c389cbd30252ffb5ce7cefd4b66bde98219edd16bf5cb6f84bb3568"
+ "sha256:6f6ead433b0534909df789ea64f0a14cdf9b6b2360757756f08182be4b9e431b",
+ "sha256:b392155112ec86a329df03b225749a0fa903aa80811e8eda55796a40b5e470d8"
],
- "version": "==6.0.0"
+ "version": "==6.1.0"
},
"jupyter-core": {
"hashes": [
@@ -726,13 +760,16 @@
"sha256:09027a7803a62ca78792ad89403b1b7a73a01c8cb65909cd876f7fcebd79b161",
"sha256:09c4b7f37d6c648cb13f9230d847adf22f8171b1ccc4d5682398e77f40309235",
"sha256:1027c282dad077d0bae18be6794e6b6b8c91d58ed8a8d89a89d59693b9131db5",
+ "sha256:13d3144e1e340870b25e7b10b98d779608c02016d5184cfb9927a9f10c689f42",
"sha256:24982cc2533820871eba85ba648cd53d8623687ff11cbb805be4ff7b4c971aff",
"sha256:29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b",
"sha256:43a55c2930bbc139570ac2452adf3d70cdbb3cfe5912c71cdce1c2c6bbd9c5d1",
"sha256:46c99d2de99945ec5cb54f23c8cd5689f6d7177305ebff350a58ce5f8de1669e",
"sha256:500d4957e52ddc3351cabf489e79c91c17f6e0899158447047588650b5e69183",
"sha256:535f6fc4d397c1563d08b88e485c3496cf5784e927af890fb3c3aac7f933ec66",
+ "sha256:596510de112c685489095da617b5bcbbac7dd6384aeebeda4df6025d0256a81b",
"sha256:62fe6c95e3ec8a7fad637b7f3d372c15ec1caa01ab47926cfdf7a75b40e0eac1",
+ "sha256:6788b695d50a51edb699cb55e35487e430fa21f1ed838122d722e0ff0ac5ba15",
"sha256:6dd73240d2af64df90aa7c4e7481e23825ea70af4b4922f8ede5b9e35f78a3b1",
"sha256:717ba8fe3ae9cc0006d7c451f0bb265ee07739daf76355d06366154ee68d221e",
"sha256:79855e1c5b8da654cf486b830bd42c06e8780cea587384cf6545b7d9ac013a0b",
@@ -749,7 +786,9 @@
"sha256:ba59edeaa2fc6114428f1637ffff42da1e311e29382d81b339c1817d37ec93c6",
"sha256:c8716a48d94b06bb3b2524c2b77e055fb313aeb4ea620c8dd03a105574ba704f",
"sha256:cd5df75523866410809ca100dc9681e301e3c27567cf498077e8551b6d20e42f",
- "sha256:e249096428b3ae81b08327a63a485ad0878de3fb939049038579ac0ef61e17e7"
+ "sha256:cdb132fc825c38e1aeec2c8aa9338310d29d337bebbd7baa06889d09a60a1fa2",
+ "sha256:e249096428b3ae81b08327a63a485ad0878de3fb939049038579ac0ef61e17e7",
+ "sha256:e8313f01ba26fbbe36c7be1966a7b7424942f670f38e666995b88d012765b9be"
],
"version": "==1.1.1"
},
@@ -770,19 +809,19 @@
},
"mock": {
"hashes": [
- "sha256:83657d894c90d5681d62155c82bda9c1187827525880eda8ff5df4ec813437c3",
- "sha256:d157e52d4e5b938c550f39eb2fd15610db062441a9c2747d3dbfa9298211d0f8"
+ "sha256:56358390ebde40c927ec5666626be7d4310a2533ae3aed5c2dd7b55b80687f48",
+ "sha256:8fff3fd7c5796ea78ae2847f32e87ad4e111e03fef6e90d03b5efb4882211d78"
],
"index": "pypi",
- "version": "==3.0.5"
+ "version": "==4.0.0"
},
"more-itertools": {
"hashes": [
- "sha256:b84b238cce0d9adad5ed87e745778d20a3f8487d0f0cb8b8a586816c7496458d",
- "sha256:c833ef592a0324bcc6a60e48440da07645063c453880c9477ceb22490aec1564"
+ "sha256:5dd8bcf33e5f9513ffa06d5ad33d78f31e1931ac9a18f33d37e77a180d393a7c",
+ "sha256:b1ddb932186d8a6ac451e1d95844b382f55e12686d51ca0c68b6f61f2ab7a507"
],
"index": "pypi",
- "version": "==8.0.2"
+ "version": "==8.2.0"
},
"nbconvert": {
"hashes": [
@@ -793,25 +832,25 @@
},
"nbformat": {
"hashes": [
- "sha256:b9a0dbdbd45bb034f4f8893cafd6f652ea08c8c1674ba83f2dc55d3955743b0b",
- "sha256:f7494ef0df60766b7cabe0a3651556345a963b74dbc16bc7c18479041170d402"
+ "sha256:562de41fc7f4f481b79ab5d683279bf3a168858268d4387b489b7b02be0b324a",
+ "sha256:f4bbbd8089bd346488f00af4ce2efb7f8310a74b2058040d075895429924678c"
],
- "version": "==4.4.0"
+ "version": "==5.0.4"
},
"notebook": {
"hashes": [
- "sha256:399a4411e171170173344761e7fd4491a3625659881f76ce47c50231ed714d9b",
- "sha256:f67d76a68b1074a91693e95dea903ea01fd02be7c9fac5a4b870b8475caed805"
+ "sha256:3edc616c684214292994a3af05eaea4cc043f6b4247d830f3a2f209fa7639a80",
+ "sha256:47a9092975c9e7965ada00b9a20f0cf637d001db60d241d479f53c0be117ad48"
],
- "version": "==6.0.2"
+ "version": "==6.0.3"
},
"packaging": {
"hashes": [
- "sha256:28b924174df7a2fa32c1953825ff29c61e2f5e082343165438812f00d3a7fc47",
- "sha256:d9551545c6d761f3def1677baf08ab2a3ca17c56879e70fecba2fc4dde4ed108"
+ "sha256:170748228214b70b672c581a3dd610ee51f733018650740e98c7df862a583f73",
+ "sha256:e665345f9eef0c621aa0bf2f8d78cf6d21904eef16a93f020240b704a57f1334"
],
"index": "pypi",
- "version": "==19.2"
+ "version": "==20.1"
},
"pandocfilters": {
"hashes": [
@@ -821,18 +860,18 @@
},
"parso": {
"hashes": [
- "sha256:55cf25df1a35fd88b878715874d2c4dc1ad3f0eebd1e0266a67e1f55efccfbe1",
- "sha256:5c1f7791de6bd5dbbeac8db0ef5594b36799de198b3f7f7014643b0c5536b9d3"
+ "sha256:56b2105a80e9c4df49de85e125feb6be69f49920e121406f15e7acde6c9dfc57",
+ "sha256:951af01f61e6dccd04159042a0706a31ad437864ec6e25d0d7a96a9fbb9b0095"
],
- "version": "==0.5.2"
+ "version": "==0.6.1"
},
"pexpect": {
"hashes": [
- "sha256:2094eefdfcf37a1fdbfb9aa090862c1a4878e5c7e0e7e7088bdb511c558e5cd1",
- "sha256:9e2c1fd0e6ee3a49b28f95d4b33bc389c89b20af6a1255906e90ff1262ce62eb"
+ "sha256:0b48a55dcb3c05f3329815901ea4fc1537514d6ba867a152b581d69ae3710937",
+ "sha256:fc65a43959d153d0114afe13997d439c22823a27cefceb5ff35c2178c6784c0c"
],
"markers": "sys_platform != 'win32'",
- "version": "==4.7.0"
+ "version": "==4.8.0"
},
"pickleshare": {
"hashes": [
@@ -857,11 +896,10 @@
},
"prompt-toolkit": {
"hashes": [
- "sha256:46642344ce457641f28fc9d1c9ca939b63dadf8df128b86f1b9860e59c73a5e4",
- "sha256:e7f8af9e3d70f514373bf41aa51bc33af12a6db3f71461ea47fea985defb2c31",
- "sha256:f15af68f66e664eaa559d4ac8a928111eebd5feda0c11738b5998045224829db"
+ "sha256:a402e9bf468b63314e37460b68ba68243d55b2f8c4d0192f85a019af3945050e",
+ "sha256:c93e53af97f630f12f5f62a3274e79527936ed466f038953dfa379d4941f651a"
],
- "version": "==2.0.10"
+ "version": "==3.0.3"
},
"ptyprocess": {
"hashes": [
@@ -873,11 +911,11 @@
},
"py": {
"hashes": [
- "sha256:64f65755aee5b381cea27766a3a147c3f15b9b6b9ac88676de66ba2ae36793fa",
- "sha256:dc639b046a6e2cff5bbe40194ad65936d6ba360b52b3c3fe1d08a82dd50b5e53"
+ "sha256:5e27081401262157467ad6e7f851b7aa402c5852dbcb3dae06768434de5752aa",
+ "sha256:c20fdd83a5dbc0af9efd622bee9a5564e278f6380fffcacc43ba6f43db2813b0"
],
"index": "pypi",
- "version": "==1.8.0"
+ "version": "==1.8.1"
},
"pycodestyle": {
"hashes": [
@@ -912,24 +950,24 @@
},
"pyparsing": {
"hashes": [
- "sha256:20f995ecd72f2a1f4bf6b072b63b22e2eb457836601e76d6e5dfcd75436acc1f",
- "sha256:4ca62001be367f01bd3e92ecbb79070272a9d4964dce6a48a82ff0b8bc7e683a"
+ "sha256:4c830582a84fb022400b85429791bc551f1f4871c33f23e44f353119e92f969f",
+ "sha256:c342dccb5250c08d45fd6f8b4a559613ca603b57498511740e65cd11a2e7dcec"
],
- "version": "==2.4.5"
+ "version": "==2.4.6"
},
"pyrsistent": {
"hashes": [
- "sha256:f3b280d030afb652f79d67c5586157c5c1355c9a58dfc7940566e28d28f3df1b"
+ "sha256:cdc7b5e3ed77bed61270a47d35434a30617b9becdf2478af76ad2c6ade307280"
],
- "version": "==0.15.6"
+ "version": "==0.15.7"
},
"pytest": {
"hashes": [
- "sha256:6b571215b5a790f9b41f19f3531c53a45cf6bb8ef2988bc1ff9afb38270b25fa",
- "sha256:e41d489ff43948babd0fad7ad5e49b8735d5d55e26628a58673c39ff61d95de4"
+ "sha256:0d5fe9189a148acc3c3eb2ac8e1ac0742cb7618c084f3d228baaec0c254b318d",
+ "sha256:ff615c761e25eb25df19edddc0b970302d2a9091fbce0e7213298d85fb61fef6"
],
"index": "pypi",
- "version": "==5.3.2"
+ "version": "==5.3.5"
},
"pytest-cov": {
"hashes": [
@@ -941,11 +979,11 @@
},
"pytest-django": {
"hashes": [
- "sha256:17592f06d51c2ef4b7a0fb24aa32c8b6998506a03c8439606cb96db160106659",
- "sha256:ef3d15b35ed7e46293475e6f282e71a53bcd8c6f87bdc5d5e7ad0f4d49352127"
+ "sha256:456fa6854d04ee625d6bbb8b38ca2259e7040a6f93333bfe8bc8159b7e987203",
+ "sha256:489b904f695f9fb880ce591cf5a4979880afb467763b1f180c07574554bdfd26"
],
"index": "pypi",
- "version": "==3.7.0"
+ "version": "==3.8.0"
},
"pytest-factoryboy": {
"hashes": [
@@ -1011,11 +1049,11 @@
},
"six": {
"hashes": [
- "sha256:1f1b7d42e254082a9db6279deae68afb421ceba6158efa6131de7b3003ee93fd",
- "sha256:30f610279e8b2578cab6db20741130331735c781b56053c59c4076da27f06b66"
+ "sha256:236bdbdce46e6e6a3d61a337c0f8b763ca1e8717c03b369e87a7ec7ce1319c0a",
+ "sha256:8f3cd2e254d8f793e7f3d6d9df77b92252b52637291d0f0da013c76ea2724b6c"
],
"index": "pypi",
- "version": "==1.13.0"
+ "version": "==1.14.0"
},
"snakeviz": {
"hashes": [
@@ -1067,37 +1105,38 @@
},
"typed-ast": {
"hashes": [
- "sha256:1170afa46a3799e18b4c977777ce137bb53c7485379d9706af8a59f2ea1aa161",
- "sha256:18511a0b3e7922276346bcb47e2ef9f38fb90fd31cb9223eed42c85d1312344e",
- "sha256:262c247a82d005e43b5b7f69aff746370538e176131c32dda9cb0f324d27141e",
- "sha256:2b907eb046d049bcd9892e3076c7a6456c93a25bebfe554e931620c90e6a25b0",
- "sha256:354c16e5babd09f5cb0ee000d54cfa38401d8b8891eefa878ac772f827181a3c",
- "sha256:48e5b1e71f25cfdef98b013263a88d7145879fbb2d5185f2a0c79fa7ebbeae47",
- "sha256:4e0b70c6fc4d010f8107726af5fd37921b666f5b31d9331f0bd24ad9a088e631",
- "sha256:630968c5cdee51a11c05a30453f8cd65e0cc1d2ad0d9192819df9978984529f4",
- "sha256:66480f95b8167c9c5c5c87f32cf437d585937970f3fc24386f313a4c97b44e34",
- "sha256:71211d26ffd12d63a83e079ff258ac9d56a1376a25bc80b1cdcdf601b855b90b",
- "sha256:7954560051331d003b4e2b3eb822d9dd2e376fa4f6d98fee32f452f52dd6ebb2",
- "sha256:838997f4310012cf2e1ad3803bce2f3402e9ffb71ded61b5ee22617b3a7f6b6e",
- "sha256:95bd11af7eafc16e829af2d3df510cecfd4387f6453355188342c3e79a2ec87a",
- "sha256:bc6c7d3fa1325a0c6613512a093bc2a2a15aeec350451cbdf9e1d4bffe3e3233",
- "sha256:cc34a6f5b426748a507dd5d1de4c1978f2eb5626d51326e43280941206c209e1",
- "sha256:d755f03c1e4a51e9b24d899561fec4ccaf51f210d52abdf8c07ee2849b212a36",
- "sha256:d7c45933b1bdfaf9f36c579671fec15d25b06c8398f113dab64c18ed1adda01d",
- "sha256:d896919306dd0aa22d0132f62a1b78d11aaf4c9fc5b3410d3c666b818191630a",
- "sha256:fdc1c9bbf79510b76408840e009ed65958feba92a88833cdceecff93ae8fff66",
- "sha256:ffde2fbfad571af120fcbfbbc61c72469e72f550d676c3342492a9dfdefb8f12"
+ "sha256:0666aa36131496aed8f7be0410ff974562ab7eeac11ef351def9ea6fa28f6355",
+ "sha256:0c2c07682d61a629b68433afb159376e24e5b2fd4641d35424e462169c0a7919",
+ "sha256:249862707802d40f7f29f6e1aad8d84b5aa9e44552d2cc17384b209f091276aa",
+ "sha256:24995c843eb0ad11a4527b026b4dde3da70e1f2d8806c99b7b4a7cf491612652",
+ "sha256:269151951236b0f9a6f04015a9004084a5ab0d5f19b57de779f908621e7d8b75",
+ "sha256:4083861b0aa07990b619bd7ddc365eb7fa4b817e99cf5f8d9cf21a42780f6e01",
+ "sha256:498b0f36cc7054c1fead3d7fc59d2150f4d5c6c56ba7fb150c013fbc683a8d2d",
+ "sha256:4e3e5da80ccbebfff202a67bf900d081906c358ccc3d5e3c8aea42fdfdfd51c1",
+ "sha256:6daac9731f172c2a22ade6ed0c00197ee7cc1221aa84cfdf9c31defeb059a907",
+ "sha256:715ff2f2df46121071622063fc7543d9b1fd19ebfc4f5c8895af64a77a8c852c",
+ "sha256:73d785a950fc82dd2a25897d525d003f6378d1cb23ab305578394694202a58c3",
+ "sha256:8c8aaad94455178e3187ab22c8b01a3837f8ee50e09cf31f1ba129eb293ec30b",
+ "sha256:8ce678dbaf790dbdb3eba24056d5364fb45944f33553dd5869b7580cdbb83614",
+ "sha256:aaee9905aee35ba5905cfb3c62f3e83b3bec7b39413f0a7f19be4e547ea01ebb",
+ "sha256:bcd3b13b56ea479b3650b82cabd6b5343a625b0ced5429e4ccad28a8973f301b",
+ "sha256:c9e348e02e4d2b4a8b2eedb48210430658df6951fa484e59de33ff773fbd4b41",
+ "sha256:d205b1b46085271b4e15f670058ce182bd1199e56b317bf2ec004b6a44f911f6",
+ "sha256:d43943ef777f9a1c42bf4e552ba23ac77a6351de620aa9acf64ad54933ad4d34",
+ "sha256:d5d33e9e7af3b34a40dc05f498939f0ebf187f07c385fd58d591c533ad8562fe",
+ "sha256:fc0fea399acb12edbf8a628ba8d2312f583bdbdb3335635db062fa98cf71fca4",
+ "sha256:fe460b922ec15dd205595c9b5b99e2f056fd98ae8f9f56b888e7a17dc2b757e7"
],
"markers": "implementation_name == 'cpython' and python_version < '3.8'",
- "version": "==1.4.0"
+ "version": "==1.4.1"
},
"wcwidth": {
"hashes": [
- "sha256:3df37372226d6e63e1b1e1eda15c594bca98a22d33a23832a90998faa96bc65e",
- "sha256:f4ebe71925af7b40a864553f761ed559b43544f8f71746c2d756c7fe788ade7c"
+ "sha256:8fd29383f539be45b20bd4df0dc29c20ba48654a41e661925e612311e9f3c603",
+ "sha256:f28b3e8a6483e5d49e7f8949ac1a78314e740333ae305b4ba5defd3e74fb37a8"
],
"index": "pypi",
- "version": "==0.1.7"
+ "version": "==0.1.8"
},
"webencodings": {
"hashes": [
@@ -1121,11 +1160,11 @@
},
"zipp": {
"hashes": [
- "sha256:3718b1cbcd963c7d4c5511a8240812904164b7f381b647143a89d3b98f9bcd8e",
- "sha256:f06903e9f1f43b12d371004b4ac7b06ab39a44adc747266928ae6debfa7b3335"
+ "sha256:ccc94ed0909b58ffe34430ea5451f07bc0c76467d7081619a454bf5c98b89e28",
+ "sha256:feae2f18633c32fc71f2de629bfb3bd3c9325cd4419642b1f1da42ee488d9b98"
],
"index": "pypi",
- "version": "==0.6.0"
+ "version": "==2.1.0"
}
}
}
diff --git a/backend/metagenedb/apps/catalog/management/commands/import_igc_sequences.py b/backend/metagenedb/apps/catalog/management/commands/import_igc_sequences.py
new file mode 100644
index 0000000000000000000000000000000000000000..6f3fef846ab76e005f86739bc0fc64d6ff9ea850
--- /dev/null
+++ b/backend/metagenedb/apps/catalog/management/commands/import_igc_sequences.py
@@ -0,0 +1,71 @@
+import logging
+
+import pyfastx
+from django.core.management.base import BaseCommand
+from slugify import slugify
+
+from metagenedb.apps.catalog.models import Gene
+
+logging.basicConfig(format='[%(asctime)s] %(levelname)s:%(name)s:%(message)s')
+logger = logging.getLogger(__name__)
+
+
+class ImportIGCGeneSequences(object):
+
+ def __init__(self, sequence_file):
+ self.sequence_file = sequence_file
+ self._reset_counters()
+
+ def _reset_counters(self):
+ self.processed_genes = 0
+ self.updated_genes = 0
+ self.skipped_genes = 0
+
+ def update_sequences(self, sequences):
+ genes = Gene.objects.filter(gene_id__in=sequences.keys())
+ genes_retrieved = genes.count()
+ for gene in genes:
+ gene.sequence = sequences[gene.gene_id]
+ try:
+ Gene.objects.bulk_update(genes, ['sequence'])
+ self.updated_genes += genes_retrieved
+ self.skipped_genes += len(sequences) - genes_retrieved
+ except Exception:
+ logger.warning("Could not update genes... skipped.")
+ self.skipped_genes += len(sequences)
+
+ def load_all(self, test=False, chunk_size=10000):
+ logger.info("Starting IGC Gene sequences import (update) to DB")
+ current_sequences = {}
+ for name, seq in pyfastx.Fasta(self.sequence_file, build_index=False):
+ current_sequences[slugify(name.split()[0])] = seq
+ self.processed_genes += 1
+ if self.processed_genes % chunk_size == 0:
+ self.update_sequences(current_sequences)
+ logger.info("%s Gene sequences processed so far...", self.processed_genes)
+ current_sequences = {}
+ if test is True:
+ break
+ if len(current_sequences) > 0:
+ self.update_sequences(current_sequences)
+ logger.info("[DONE] %s/%s Gene sequences updated.", self.updated_genes, self.processed_genes)
+ logger.info("[DONE] %s/%s Genes skipped.", self.skipped_genes, self.processed_genes)
+
+
+class Command(BaseCommand):
+ help = 'Create or update all EggNOG entries from annotations.tsv file.'
+
+ def add_arguments(self, parser):
+ parser.add_argument('fasta', help='IGC.fa.gz file from IGC. Genes need to exist in DB for this script to work.')
+ parser.add_argument('--test', action='store_true', help='Run only on first 10000 sequences.')
+
+ def set_logger_level(self, verbosity):
+ if verbosity > 2:
+ logger.setLevel(logging.DEBUG)
+ elif verbosity > 1:
+ logger.setLevel(logging.INFO)
+
+ def handle(self, *args, **options):
+ self.set_logger_level(int(options['verbosity']))
+ import_igc = ImportIGCGeneSequences(options['fasta'])
+ import_igc.load_all(test=options['test'])
diff --git a/backend/metagenedb/apps/catalog/management/commands/test_import_igc_sequences.py b/backend/metagenedb/apps/catalog/management/commands/test_import_igc_sequences.py
new file mode 100644
index 0000000000000000000000000000000000000000..5a1608ec3f63e7e98ec3d806bdaec5b8756c79e1
--- /dev/null
+++ b/backend/metagenedb/apps/catalog/management/commands/test_import_igc_sequences.py
@@ -0,0 +1,26 @@
+from rest_framework.test import APITestCase
+
+from metagenedb.apps.catalog.models import Gene
+from metagenedb.apps.catalog.management.commands.import_igc_sequences import ImportIGCGeneSequences
+from metagenedb.apps.catalog.factory import (
+ GeneFactory,
+)
+
+
+class TestUpdateSequences(APITestCase):
+
+ @classmethod
+ def setUpTestData(cls):
+ cls.gene = GeneFactory()
+
+ def setUp(self):
+ self.import_igc_seq = ImportIGCGeneSequences("test") # we never make real reference to the sequence_file
+
+ def test_update_sequence(self):
+ seq = "ACTG"
+ sequences = {
+ self.gene.gene_id: seq
+ }
+ self.assertFalse(Gene.objects.get(gene_id=self.gene.gene_id).sequence)
+ self.import_igc_seq.update_sequences(sequences)
+ self.assertEqual(Gene.objects.get(gene_id=self.gene.gene_id).sequence, seq)
diff --git a/backend/metagenedb/apps/catalog/migrations/0024_set_undef_default_source_gene.py b/backend/metagenedb/apps/catalog/migrations/0024_set_undef_default_source_gene.py
new file mode 100644
index 0000000000000000000000000000000000000000..cd847932c280b6a2a86abd60f83b76c4ebfd346b
--- /dev/null
+++ b/backend/metagenedb/apps/catalog/migrations/0024_set_undef_default_source_gene.py
@@ -0,0 +1,18 @@
+# Generated by Django 3.0.1 on 2020-02-06 10:05
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+ dependencies = [
+ ('catalog', '0023_add_sequences_and_source_to_gene'),
+ ]
+
+ operations = [
+ migrations.AlterField(
+ model_name='gene',
+ name='source',
+ field=models.CharField(choices=[('undef', 'Undefined'), ('igc', 'IGC')], default='undef', max_length=10),
+ ),
+ ]