diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index e3df1a004ff1f22e790d211b55289aa8ec528ddf..8a279906a68fa0b066e6696af161de126d3478a6 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -19,9 +19,9 @@ cache:
- ~/.cache/pip/
before_script:
+ - pip install pipenv
- cd backend
- - pip install -r requirements_dev.txt
- - pip install -e .
+ - pipenv install --system --deploy
test-backend:
stage: lint_test_coverage_backend
diff --git a/backend/Dockerfile b/backend/Dockerfile
index aa1239b2a56915cacb3dced1d4e58ca5404e670e..bd59d9e04ce8bab667c8cbeda535d3807614a146 100644
--- a/backend/Dockerfile
+++ b/backend/Dockerfile
@@ -2,13 +2,12 @@ FROM python:3.7
ENV PYTHONDONTWRITEBYTECODE 1
ENV PYTHONUNBUFFERED 1
-ENV WEB_DOCKER 1
+
+# Install pipenv
+RUN pip install pipenv
WORKDIR /code
-# Copy requirements and install
-COPY requirements.txt /code/
-RUN pip install -r requirements.txt
-# Copy the project and install
+# Copy Pipfile and install
COPY . /code/
-RUN pip install -e .
\ No newline at end of file
+RUN pipenv install --system --deploy
diff --git a/backend/Pipfile b/backend/Pipfile
new file mode 100644
index 0000000000000000000000000000000000000000..7f3f2420df379b63d38b59717b28b17c9a15f827
--- /dev/null
+++ b/backend/Pipfile
@@ -0,0 +1,52 @@
+[[source]]
+name = "pypi"
+url = "https://pypi.org/simple"
+verify_ssl = true
+
+[dev-packages]
+atomicwrites = "==1.3.0"
+attrs = "==19.1.0"
+coverage = "==4.5.3"
+entrypoints = "==0.3"
+flake8 = "==3.7.7"
+importlib-metadata = "==0.18"
+kiwisolver = "==1.1.0"
+mccabe = "==0.6.1"
+more-itertools = "==7.0.0"
+pluggy = "==0.12.0"
+py = "==1.8.0"
+pycodestyle = "==2.5.0"
+pyflakes = "==2.1.1"
+pyparsing = "==2.4.0"
+pytest = "==4.6.3"
+pytest-cov = "==2.7.1"
+pytest-django = "==3.5.0"
+wcwidth = "==0.1.7"
+zipp = "==0.5.1"
+Cycler = "==0.10.0"
+
+[packages]
+certifi = "==2019.6.16"
+chardet = "==3.0.4"
+django-cors-headers = "==3.0.2"
+django-environ = "==0.4.5"
+django-extensions = "==2.1.7"
+django-filter = "==2.1.0"
+djangorestframework = "==3.9.4"
+djangorestframework-jwt = "==1.11.0"
+idna = "==2.8"
+numpy = "==1.16.4"
+pandas = "==0.24.2"
+psycopg2 = "==2.8.2"
+python-dateutil = "==2.8.0"
+pytz = "==2019.1"
+requests = "==2.22.0"
+six = "==1.12.0"
+sqlparse = "==0.3.0"
+urllib3 = "==1.25.3"
+Django = "==2.2.1"
+PyJWT = "==1.7.1"
+metagenedb = {editable = true,path = "."}
+
+[requires]
+python_version = "3.7"
diff --git a/backend/Pipfile.lock b/backend/Pipfile.lock
new file mode 100644
index 0000000000000000000000000000000000000000..dbf1b65b313e2060d0049740b372f1a6a28dc4e9
--- /dev/null
+++ b/backend/Pipfile.lock
@@ -0,0 +1,464 @@
+{
+ "_meta": {
+ "hash": {
+ "sha256": "e14c726005da4b00e3a47ce36ff9d30acb89b5e766665207cce0a4273fb7fea9"
+ },
+ "pipfile-spec": 6,
+ "requires": {
+ "python_version": "3.7"
+ },
+ "sources": [
+ {
+ "name": "pypi",
+ "url": "https://pypi.org/simple",
+ "verify_ssl": true
+ }
+ ]
+ },
+ "default": {
+ "certifi": {
+ "hashes": [
+ "sha256:046832c04d4e752f37383b628bc601a7ea7211496b4638f6514d0e5b9acc4939",
+ "sha256:945e3ba63a0b9f577b1395204e13c3a231f9bc0223888be653286534e5873695"
+ ],
+ "index": "pypi",
+ "version": "==2019.6.16"
+ },
+ "chardet": {
+ "hashes": [
+ "sha256:84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae",
+ "sha256:fc323ffcaeaed0e0a02bf4d117757b98aed530d9ed4531e3e15460124c106691"
+ ],
+ "index": "pypi",
+ "version": "==3.0.4"
+ },
+ "django": {
+ "hashes": [
+ "sha256:6fcc3cbd55b16f9a01f37de8bcbe286e0ea22e87096557f1511051780338eaea",
+ "sha256:bb407d0bb46395ca1241f829f5bd03f7e482f97f7d1936e26e98dacb201ed4ec"
+ ],
+ "index": "pypi",
+ "version": "==2.2.1"
+ },
+ "django-cors-headers": {
+ "hashes": [
+ "sha256:5b80bf0f8d7fc6e2bcb4f40781d5ff3661961bbf1982e52daec77241dea3b890",
+ "sha256:ebf3e2cf25aa6993b959a8e6a87828ebb3c8fe5bc3ec4a2d6e65f3b8d9b4212c"
+ ],
+ "index": "pypi",
+ "version": "==3.0.2"
+ },
+ "django-environ": {
+ "hashes": [
+ "sha256:6c9d87660142608f63ec7d5ce5564c49b603ea8ff25da595fd6098f6dc82afde",
+ "sha256:c57b3c11ec1f319d9474e3e5a79134f40174b17c7cc024bbb2fad84646b120c4"
+ ],
+ "index": "pypi",
+ "version": "==0.4.5"
+ },
+ "django-extensions": {
+ "hashes": [
+ "sha256:6766c573ffe63693cd485512a02f3b59622c884cbfeca241d1278ffdf0ac39ae",
+ "sha256:c43e46cc95985c278afda645480b79f9a85cfe5a82c957accd08b8045793b707"
+ ],
+ "index": "pypi",
+ "version": "==2.1.7"
+ },
+ "django-filter": {
+ "hashes": [
+ "sha256:3dafb7d2810790498895c22a1f31b2375795910680ac9c1432821cbedb1e176d",
+ "sha256:a3014de317bef0cd43075a0f08dfa1d319a7ccc5733c3901fb860da70b0dda68"
+ ],
+ "index": "pypi",
+ "version": "==2.1.0"
+ },
+ "djangorestframework": {
+ "hashes": [
+ "sha256:376f4b50340a46c15ae15ddd0c853085f4e66058f97e4dbe7d43ed62f5e60651",
+ "sha256:c12869cfd83c33d579b17b3cb28a2ae7322a53c3ce85580c2a2ebe4e3f56c4fb"
+ ],
+ "index": "pypi",
+ "version": "==3.9.4"
+ },
+ "djangorestframework-jwt": {
+ "hashes": [
+ "sha256:5efe33032f3a4518a300dc51a51c92145ad95fb6f4b272e5aa24701db67936a7",
+ "sha256:ab15dfbbe535eede8e2e53adaf52ef0cf018ee27dbfad10cbc4cbec2ab63d38c"
+ ],
+ "index": "pypi",
+ "version": "==1.11.0"
+ },
+ "idna": {
+ "hashes": [
+ "sha256:c357b3f628cf53ae2c4c05627ecc484553142ca23264e593d327bcde5e9c3407",
+ "sha256:ea8b7f6188e6fa117537c3df7da9fc686d485087abf6ac197f9c46432f7e4a3c"
+ ],
+ "index": "pypi",
+ "version": "==2.8"
+ },
+ "metagenedb": {
+ "editable": true,
+ "path": "."
+ },
+ "numpy": {
+ "hashes": [
+ "sha256:0778076e764e146d3078b17c24c4d89e0ecd4ac5401beff8e1c87879043a0633",
+ "sha256:141c7102f20abe6cf0d54c4ced8d565b86df4d3077ba2343b61a6db996cefec7",
+ "sha256:14270a1ee8917d11e7753fb54fc7ffd1934f4d529235beec0b275e2ccf00333b",
+ "sha256:27e11c7a8ec9d5838bc59f809bfa86efc8a4fd02e58960fa9c49d998e14332d5",
+ "sha256:2a04dda79606f3d2f760384c38ccd3d5b9bb79d4c8126b67aff5eb09a253763e",
+ "sha256:3c26010c1b51e1224a3ca6b8df807de6e95128b0908c7e34f190e7775455b0ca",
+ "sha256:52c40f1a4262c896420c6ea1c6fda62cf67070e3947e3307f5562bd783a90336",
+ "sha256:6e4f8d9e8aa79321657079b9ac03f3cf3fd067bf31c1cca4f56d49543f4356a5",
+ "sha256:7242be12a58fec245ee9734e625964b97cf7e3f2f7d016603f9e56660ce479c7",
+ "sha256:7dc253b542bfd4b4eb88d9dbae4ca079e7bf2e2afd819ee18891a43db66c60c7",
+ "sha256:94f5bd885f67bbb25c82d80184abbf7ce4f6c3c3a41fbaa4182f034bba803e69",
+ "sha256:a89e188daa119ffa0d03ce5123dee3f8ffd5115c896c2a9d4f0dbb3d8b95bfa3",
+ "sha256:ad3399da9b0ca36e2f24de72f67ab2854a62e623274607e37e0ce5f5d5fa9166",
+ "sha256:b0348be89275fd1d4c44ffa39530c41a21062f52299b1e3ee7d1c61f060044b8",
+ "sha256:b5554368e4ede1856121b0dfa35ce71768102e4aa55e526cb8de7f374ff78722",
+ "sha256:cbddc56b2502d3f87fda4f98d948eb5b11f36ff3902e17cb6cc44727f2200525",
+ "sha256:d79f18f41751725c56eceab2a886f021d70fd70a6188fd386e29a045945ffc10",
+ "sha256:dc2ca26a19ab32dc475dbad9dfe723d3a64c835f4c23f625c2b6566ca32b9f29",
+ "sha256:dd9bcd4f294eb0633bb33d1a74febdd2b9018b8b8ed325f861fffcd2c7660bb8",
+ "sha256:e8baab1bc7c9152715844f1faca6744f2416929de10d7639ed49555a85549f52",
+ "sha256:ec31fe12668af687b99acf1567399632a7c47b0e17cfb9ae47c098644ef36797",
+ "sha256:f12b4f7e2d8f9da3141564e6737d79016fe5336cc92de6814eba579744f65b0a",
+ "sha256:f58ac38d5ca045a377b3b377c84df8175ab992c970a53332fa8ac2373df44ff7"
+ ],
+ "index": "pypi",
+ "version": "==1.16.4"
+ },
+ "pandas": {
+ "hashes": [
+ "sha256:071e42b89b57baa17031af8c6b6bbd2e9a5c68c595bc6bf9adabd7a9ed125d3b",
+ "sha256:17450e25ae69e2e6b303817bdf26b2cd57f69595d8550a77c308be0cd0fd58fa",
+ "sha256:17916d818592c9ec891cbef2e90f98cc85e0f1e89ed0924c9b5220dc3209c846",
+ "sha256:2538f099ab0e9f9c9d09bbcd94b47fd889bad06dc7ae96b1ed583f1dc1a7a822",
+ "sha256:366f30710172cb45a6b4f43b66c220653b1ea50303fbbd94e50571637ffb9167",
+ "sha256:42e5ad741a0d09232efbc7fc648226ed93306551772fc8aecc6dce9f0e676794",
+ "sha256:4e718e7f395ba5bfe8b6f6aaf2ff1c65a09bb77a36af6394621434e7cc813204",
+ "sha256:4f919f409c433577a501e023943e582c57355d50a724c589e78bc1d551a535a2",
+ "sha256:4fe0d7e6438212e839fc5010c78b822664f1a824c0d263fd858f44131d9166e2",
+ "sha256:5149a6db3e74f23dc3f5a216c2c9ae2e12920aa2d4a5b77e44e5b804a5f93248",
+ "sha256:627594338d6dd995cfc0bacd8e654cd9e1252d2a7c959449228df6740d737eb8",
+ "sha256:83c702615052f2a0a7fb1dd289726e29ec87a27272d775cb77affe749cca28f8",
+ "sha256:8c872f7fdf3018b7891e1e3e86c55b190e6c5cee70cab771e8f246c855001296",
+ "sha256:90f116086063934afd51e61a802a943826d2aac572b2f7d55caaac51c13db5b5",
+ "sha256:a3352bacac12e1fc646213b998bce586f965c9d431773d9e91db27c7c48a1f7d",
+ "sha256:bcdd06007cca02d51350f96debe51331dec429ac8f93930a43eb8fb5639e3eb5",
+ "sha256:c1bd07ebc15285535f61ddd8c0c75d0d6293e80e1ee6d9a8d73f3f36954342d0",
+ "sha256:c9a4b7c55115eb278c19aa14b34fcf5920c8fe7797a09b7b053ddd6195ea89b3",
+ "sha256:cc8fc0c7a8d5951dc738f1c1447f71c43734244453616f32b8aa0ef6013a5dfb",
+ "sha256:d7b460bc316064540ce0c41c1438c416a40746fd8a4fb2999668bf18f3c4acf1"
+ ],
+ "index": "pypi",
+ "version": "==0.24.2"
+ },
+ "psycopg2": {
+ "hashes": [
+ "sha256:00cfecb3f3db6eb76dcc763e71777da56d12b6d61db6a2c6ccbbb0bff5421f8f",
+ "sha256:076501fc24ae13b2609ba2303d88d4db79072562f0b8cc87ec1667dedff99dc1",
+ "sha256:4e2b34e4c0ddfeddf770d7df93e269700b080a4d2ec514fec668d71895f56782",
+ "sha256:5cacf21b6f813c239f100ef78a4132056f93a5940219ec25d2ef833cbeb05588",
+ "sha256:61f58e9ecb9e4dc7e30be56b562f8fc10ae3addcfcef51b588eed10a5a66100d",
+ "sha256:8954ff6e47247bdd134db602fcadfc21662835bd92ce0760f3842eacfeb6e0f3",
+ "sha256:b6e8c854cdc623028e558a409b06ea2f16d13438335941c7765d0a42b5bedd33",
+ "sha256:baca21c0f7344576346e260454d0007313ccca8c170684707a63946b27a56c8f",
+ "sha256:bb1735378770fb95dbe392d29e71405d45c8bdcfa064f916504833a92ab03c55",
+ "sha256:de3d3c46c1ee18f996db42d1eb44cf1565cc9e38fb1dbd9b773ff6b3fa8035d7",
+ "sha256:dee885602bb200bdcb1d30f6da6c7bb207360bc786d0a364fe1540dd14af0bab"
+ ],
+ "index": "pypi",
+ "version": "==2.8.2"
+ },
+ "pyjwt": {
+ "hashes": [
+ "sha256:5c6eca3c2940464d106b99ba83b00c6add741c9becaec087fb7ccdefea71350e",
+ "sha256:8d59a976fb773f3e6a39c85636357c4f0e242707394cadadd9814f5cbaa20e96"
+ ],
+ "index": "pypi",
+ "version": "==1.7.1"
+ },
+ "python-dateutil": {
+ "hashes": [
+ "sha256:7e6584c74aeed623791615e26efd690f29817a27c73085b78e4bad02493df2fb",
+ "sha256:c89805f6f4d64db21ed966fda138f8a5ed7a4fdbc1a8ee329ce1b74e3c74da9e"
+ ],
+ "index": "pypi",
+ "version": "==2.8.0"
+ },
+ "pytz": {
+ "hashes": [
+ "sha256:303879e36b721603cc54604edcac9d20401bdbe31e1e4fdee5b9f98d5d31dfda",
+ "sha256:d747dd3d23d77ef44c6a3526e274af6efeb0a6f1afd5a69ba4d5be4098c8e141"
+ ],
+ "index": "pypi",
+ "version": "==2019.1"
+ },
+ "requests": {
+ "hashes": [
+ "sha256:11e007a8a2aa0323f5a921e9e6a2d7e4e67d9877e85773fba9ba6419025cbeb4",
+ "sha256:9cf5292fcd0f598c671cfc1e0d7d1a7f13bb8085e9a590f48c010551dc6c4b31"
+ ],
+ "index": "pypi",
+ "version": "==2.22.0"
+ },
+ "six": {
+ "hashes": [
+ "sha256:3350809f0555b11f552448330d0b52d5f24c91a322ea4a15ef22629740f3761c",
+ "sha256:d16a0141ec1a18405cd4ce8b4613101da75da0e9a7aec5bdd4fa804d0e0eba73"
+ ],
+ "index": "pypi",
+ "version": "==1.12.0"
+ },
+ "sqlparse": {
+ "hashes": [
+ "sha256:40afe6b8d4b1117e7dff5504d7a8ce07d9a1b15aeeade8a2d10f130a834f8177",
+ "sha256:7c3dca29c022744e95b547e867cee89f4fce4373f3549ccd8797d8eb52cdb873"
+ ],
+ "index": "pypi",
+ "version": "==0.3.0"
+ },
+ "urllib3": {
+ "hashes": [
+ "sha256:b246607a25ac80bedac05c6f282e3cdaf3afb65420fd024ac94435cabe6e18d1",
+ "sha256:dbe59173209418ae49d485b87d1681aefa36252ee85884c31346debd19463232"
+ ],
+ "index": "pypi",
+ "version": "==1.25.3"
+ }
+ },
+ "develop": {
+ "atomicwrites": {
+ "hashes": [
+ "sha256:03472c30eb2c5d1ba9227e4c2ca66ab8287fbfbbda3888aa93dc2e28fc6811b4",
+ "sha256:75a9445bac02d8d058d5e1fe689654ba5a6556a1dfd8ce6ec55a0ed79866cfa6"
+ ],
+ "index": "pypi",
+ "version": "==1.3.0"
+ },
+ "attrs": {
+ "hashes": [
+ "sha256:69c0dbf2ed392de1cb5ec704444b08a5ef81680a61cb899dc08127123af36a79",
+ "sha256:f0b870f674851ecbfbbbd364d6b5cbdff9dcedbc7f3f5e18a6891057f21fe399"
+ ],
+ "index": "pypi",
+ "version": "==19.1.0"
+ },
+ "coverage": {
+ "hashes": [
+ "sha256:3684fabf6b87a369017756b551cef29e505cb155ddb892a7a29277b978da88b9",
+ "sha256:39e088da9b284f1bd17c750ac672103779f7954ce6125fd4382134ac8d152d74",
+ "sha256:3c205bc11cc4fcc57b761c2da73b9b72a59f8d5ca89979afb0c1c6f9e53c7390",
+ "sha256:465ce53a8c0f3a7950dfb836438442f833cf6663d407f37d8c52fe7b6e56d7e8",
+ "sha256:48020e343fc40f72a442c8a1334284620f81295256a6b6ca6d8aa1350c763bbe",
+ "sha256:5296fc86ab612ec12394565c500b412a43b328b3907c0d14358950d06fd83baf",
+ "sha256:5f61bed2f7d9b6a9ab935150a6b23d7f84b8055524e7be7715b6513f3328138e",
+ "sha256:68a43a9f9f83693ce0414d17e019daee7ab3f7113a70c79a3dd4c2f704e4d741",
+ "sha256:6b8033d47fe22506856fe450470ccb1d8ba1ffb8463494a15cfc96392a288c09",
+ "sha256:7ad7536066b28863e5835e8cfeaa794b7fe352d99a8cded9f43d1161be8e9fbd",
+ "sha256:7bacb89ccf4bedb30b277e96e4cc68cd1369ca6841bde7b005191b54d3dd1034",
+ "sha256:839dc7c36501254e14331bcb98b27002aa415e4af7ea039d9009409b9d2d5420",
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+ "sha256:932c03d2d565f75961ba1d3cec41ddde00e162c5b46d03f7423edcb807734eab",
+ "sha256:988529edadc49039d205e0aa6ce049c5ccda4acb2d6c3c5c550c17e8c02c05ba",
+ "sha256:998d7e73548fe395eeb294495a04d38942edb66d1fa61eb70418871bc621227e",
+ "sha256:9de60893fb447d1e797f6bf08fdf0dbcda0c1e34c1b06c92bd3a363c0ea8c609",
+ "sha256:9e80d45d0c7fcee54e22771db7f1b0b126fb4a6c0a2e5afa72f66827207ff2f2",
+ "sha256:a545a3dfe5082dc8e8c3eb7f8a2cf4f2870902ff1860bd99b6198cfd1f9d1f49",
+ "sha256:a5d8f29e5ec661143621a8f4de51adfb300d7a476224156a39a392254f70687b",
+ "sha256:aca06bfba4759bbdb09bf52ebb15ae20268ee1f6747417837926fae990ebc41d",
+ "sha256:bb23b7a6fd666e551a3094ab896a57809e010059540ad20acbeec03a154224ce",
+ "sha256:bfd1d0ae7e292105f29d7deaa9d8f2916ed8553ab9d5f39ec65bcf5deadff3f9",
+ "sha256:c62ca0a38958f541a73cf86acdab020c2091631c137bd359c4f5bddde7b75fd4",
+ "sha256:c709d8bda72cf4cd348ccec2a4881f2c5848fd72903c185f363d361b2737f773",
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+ }
+ }
+}
diff --git a/backend/requirements.txt b/backend/requirements.txt
deleted file mode 100644
index deec47d7a3560554891974d73ce98f74330c344e..0000000000000000000000000000000000000000
--- a/backend/requirements.txt
+++ /dev/null
@@ -1,20 +0,0 @@
-certifi==2019.6.16
-chardet==3.0.4
-Django==2.2.1
-django-cors-headers==3.0.2
-django-environ==0.4.5
-django-extensions==2.1.7
-django-filter==2.1.0
-djangorestframework==3.9.4
-djangorestframework-jwt==1.11.0
-idna==2.8
-numpy==1.16.4
-pandas==0.24.2
-psycopg2==2.8.2
-PyJWT==1.7.1
-python-dateutil==2.8.0
-pytz==2019.1
-requests==2.22.0
-six==1.12.0
-sqlparse==0.3.0
-urllib3==1.25.3
diff --git a/backend/requirements_dev.txt b/backend/requirements_dev.txt
deleted file mode 100644
index fb65183a2ee28baa29ad8c5db388e2c1c0927cfc..0000000000000000000000000000000000000000
--- a/backend/requirements_dev.txt
+++ /dev/null
@@ -1,35 +0,0 @@
-atomicwrites==1.3.0
-attrs==19.1.0
-coverage==4.5.3
-cycler==0.10.0
-Django==2.2.1
-django-cors-headers==3.0.2
-django-environ==0.4.5
-django-extensions==2.1.7
-django-filter==2.1.0
-djangorestframework==3.9.4
-djangorestframework-jwt==1.11.0
-entrypoints==0.3
-flake8==3.7.7
-importlib-metadata==0.18
-kiwisolver==1.1.0
-mccabe==0.6.1
-more-itertools==7.0.0
-numpy==1.16.4
-packaging==19.0
-pandas==0.24.2
-pluggy==0.12.0
-psycopg2==2.8.2
-py==1.8.0
-pycodestyle==2.5.0
-pyflakes==2.1.1
-PyJWT==1.7.1
-pyparsing==2.4.0
-pytest==4.6.3
-pytest-cov==2.7.1
-pytest-django==3.5.0
-pytz==2019.1
-six==1.12.0
-sqlparse==0.3.0
-wcwidth==0.1.7
-zipp==0.5.1
\ No newline at end of file