Increase resources for backend and db

backend/Pipfile

@@ -52,7 +52,7 @@ sqlparse = "*"
 urllib3 = "*"
 Django = "*"
 PyJWT = "*"
-metagenedb = {editable = true,path = "."}
+metagenedb = {path = "."}
 drf-yasg = "*"
 packaging = "*"
 python-slugify = "*"

backend/Pipfile.lock

 {
     "_meta": {
         "hash": {
-            "sha256": "a537f0bc55008c51fb8a1e1193186dac3c57c78e9bf579b283775b7de8a5f791"
+            "sha256": "0ab6318e3ebad7dbf2c7f1b4fc9123cd9125ff5507718d52c0a02bdef28c751b"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -214,7 +214,6 @@
             "version": "==3.3.0"
         },
         "metagenedb": {
-            "editable": true,
             "path": "."
         },
         "numpy": {
@@ -420,7 +419,7 @@
                 "sha256:5b26757dc6f79a3b7dc9fab95359328d5747fcb2409d331ea66d0272b90ab2a0",
                 "sha256:8b995ffe925347a2138d7ac0fe77155e4311a0ea6d6da4f5128fe4b3cbe5ed71"
             ],
-            "markers": "platform_system == 'Darwin'",
+            "markers": "sys_platform == 'darwin'",
             "version": "==0.1.0"
         },
         "astroid": {

backend/metagenedb/api/catalog/views/admin_commands.py

@@ -26,8 +26,6 @@ class ComputeStatisticsAPI(AdminCommandsAPI):
     def get(self, request, format=None):
         try:
             self.compute_class().all()
-            # ComputeGeneLength().all()
-            # ComputeTaxonomyRepartition().all()
         except Exception as exception:
             logger.warning(exception)
             return Response({"message": self.error_message},

backend/scripts/start.sh

@@ -7,4 +7,4 @@ if [ -z $PORT ];then PORT=8000;fi  # Need to fix to get value from .env file
 python ${SCRIPTS_PATH}/manage.py collectstatic --no-input
 python ${SCRIPTS_PATH}/manage.py makemigrations
 python ${SCRIPTS_PATH}/manage.py migrate
-gunicorn metagenedb.wsgi:application --capture-output --bind 0.0.0.0:${PORT}
+gunicorn metagenedb.wsgi:application --bind 0.0.0.0:${PORT}

ci/kubernetes/backend.yaml

@@ -51,11 +51,11 @@ spec:
         - containerPort: 8000
         resources:
           requests:
-            memory: "1024Mi"
-            cpu: "250m"
+            memory: "2024Mi"
+            cpu: "1000m"
           limits:
             memory: "4096Mi"
-            cpu: "1000m"
+            cpu: "2000m"
       imagePullSecrets:
         - name: registry-gitlab
       volumes:

ci/kubernetes/cronjob.yaml

@@ -3,7 +3,7 @@ kind: CronJob
 metadata:
   name: compute-statistics
 spec:
-  schedule: "* 0 * * *"
+  schedule: "0 0 * * *"
   jobTemplate:
     spec:
       template:

ci/kubernetes/postgresql.yaml

@@ -54,8 +54,8 @@ spec:
           name: postgresql
         resources:
           requests:
-            memory: "2024Mi"
-            cpu: "200m"
+            memory: "4024Mi"
+            cpu: "500m"
           limits:
             memory: "8096Mi"
             cpu: "1000m"