Merge branch '162-standardize-import-data' into 'dev'

add logs and dependencies to build UML

See merge request !71

backend/Pipfile

@@ -30,6 +30,7 @@ pytest-factoryboy = "*"
 pylint = "*"
 mock = "*"
 snakeviz = "*"
+pydotplus = "*"
 
 [packages]
 certifi = "*"
@@ -67,6 +68,7 @@ django-health-check = "==3.0.0"
 django-redis = "*"
 kombu = "*"
 dabeplech = "*"
+pydotplus = "*"
 
 [requires]
 python_version = "3.7"

backend/metagenedb/apps/catalog/management/commands/create_update_eggnog.py

@@ -40,6 +40,7 @@ class ImportEggNOG(object):
     def load_all(self, test=False, version=None):
         self._build_functional_category_dict()
         self.total_eggnog_nb = file_len(self.annotation_file)
+        logger.info("Preparing to load %s items...", self.total_eggnog_nb)
         with open(self.annotation_file, "r") as file:
             for line in file:
                 eggnog_dict = self.eggnog_parser.get_dict(line)

backend/metagenedb/apps/catalog/management/commands/create_update_kegg_ko.py

@@ -28,6 +28,7 @@ class ImportKEGGKO(object):
         all_ko_response.raise_for_status()
         all_ko = all_ko_response.text.splitlines()
         self.total_nb = len(all_ko)
+        logger.info("%s KEGG KO retrieved from KEGG API...", self.total_nb)
         for chunk in list_chunks(all_ko, chunk_size):
             ko_chunk = [KEGGLineParser.ko_list(i) for i in chunk]
             for i in ko_chunk:

backend/pyproject.toml

+[build-system]
+requires = ["setuptools", "wheel"]
+build-backend = "setuptools.build_meta:__legacy__"
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