Closes #144 replace bioapi by dabeplech

backend/Pipfile

@@ -58,7 +58,6 @@ packaging = "*"
 python-slugify = "*"
 marshmallow = "*"
 django-pandas = "*"
-bioapi = {git = "https://github.com/khillion/bioapi.git"}
 django-admin-list-filter-dropdown = "*"
 gunicorn = "*"
 pyfastx = "*"
@@ -67,6 +66,7 @@ redis = "*"
 django-health-check = "==3.0.0"
 django-redis = "*"
 kombu = "*"
+dabeplech = "*"
 
 [requires]
 python_version = "3.7"

backend/metagenedb/common/utils/external_api/togows.py

@@ -2,7 +2,7 @@ import logging
 
 from django.conf import settings
 
-from bioapi.togows import TogoWSEntryAPI
+from dabeplech.togows import TogoWSEntryAPI
 
 
 logger = logging.getLogger(__name__)

backend/metagenedb/common/utils/mocks/metagenedb.py

 from requests.exceptions import HTTPError
 
-from bioapi import MetageneDBCatalogGeneAPI
+from dabeplech import MetageneDBCatalogGeneAPI
 from django.urls import reverse
 
 

backend/scripts/populate_db/import_igc_data.py

@@ -5,7 +5,7 @@ import os
 import sys
 from itertools import islice
 
-from bioapi import (
+from dabeplech import (
     MetageneDBCatalogFunctionAPI,
     MetageneDBCatalogGeneAPI,
     MetageneDBCatalogTaxonomyAPI,

backend/scripts/populate_db/import_ncbi_taxonomy.py

@@ -4,7 +4,7 @@ import logging
 import sys
 from itertools import islice
 
-from bioapi import MetageneDBCatalogTaxonomyAPI
+from dabeplech import MetageneDBCatalogTaxonomyAPI
 
 from metagenedb.common.utils.parsers import NCBITaxonomyLineParser