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Metagenomics
metagenedb
Commits
5333a16a
Commit
5333a16a
authored
Aug 07, 2020
by
Kenzo-Hugo Hillion
♻
Browse files
Closes #144 replace bioapi by dabeplech
parent
6f4987d8
Changes
6
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backend/Pipfile
View file @
5333a16a
...
...
@@ -58,7 +58,6 @@ packaging = "*"
python-slugify
=
"*"
marshmallow
=
"*"
django-pandas
=
"*"
bioapi
=
{
git
=
"https://github.com/khillion/bioapi.git"
}
django-admin-list-filter-dropdown
=
"*"
gunicorn
=
"*"
pyfastx
=
"*"
...
...
@@ -67,6 +66,7 @@ redis = "*"
django-health-check
=
"=
=
3.0.0
"
django-redis
=
"*"
kombu
=
"*"
dabeplech
=
"*"
[requires]
python_version
=
"3.7"
backend/Pipfile.lock
View file @
5333a16a
This diff is collapsed.
Click to expand it.
backend/metagenedb/common/utils/external_api/togows.py
View file @
5333a16a
...
...
@@ -2,7 +2,7 @@ import logging
from
django.conf
import
settings
from
bioapi
.togows
import
TogoWSEntryAPI
from
dabeplech
.togows
import
TogoWSEntryAPI
logger
=
logging
.
getLogger
(
__name__
)
...
...
backend/metagenedb/common/utils/mocks/metagenedb.py
View file @
5333a16a
from
requests.exceptions
import
HTTPError
from
bioapi
import
MetageneDBCatalogGeneAPI
from
dabeplech
import
MetageneDBCatalogGeneAPI
from
django.urls
import
reverse
...
...
backend/scripts/populate_db/import_igc_data.py
View file @
5333a16a
...
...
@@ -5,7 +5,7 @@ import os
import
sys
from
itertools
import
islice
from
bioapi
import
(
from
dabeplech
import
(
MetageneDBCatalogFunctionAPI
,
MetageneDBCatalogGeneAPI
,
MetageneDBCatalogTaxonomyAPI
,
...
...
backend/scripts/populate_db/import_ncbi_taxonomy.py
View file @
5333a16a
...
...
@@ -4,7 +4,7 @@ import logging
import
sys
from
itertools
import
islice
from
bioapi
import
MetageneDBCatalogTaxonomyAPI
from
dabeplech
import
MetageneDBCatalogTaxonomyAPI
from
metagenedb.common.utils.parsers
import
NCBITaxonomyLineParser
...
...
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