add bootstrap and minor modifications

backend/metagenedb/apps/catalog/admin/function.py

@@ -6,8 +6,8 @@ from metagenedb.apps.catalog.models import Function, KeggOrthology
 @admin.register(KeggOrthology)
 class KeggOrthologyAdmin(admin.ModelAdmin):
 
-    list_display = ('function_id', 'name', 'long_name', 'ec_number', 'source')
-    search_fields = ('function_id',)
+    list_display = ('function_id', 'name', 'long_name', 'ec_number')
+    search_fields = ('function_id', 'name')
 
 
 @admin.register(Function)

backend/metagenedb/apps/catalog/urls.py

@@ -4,6 +4,6 @@ from . import views
 
 urlpatterns = [
     path('', views.index, name='index'),
-    re_path(r'^api/genes$', views.gene_list, name='genes'),
+    re_path(r'^api/genes/$', views.gene_list, name='genes'),
     re_path(r'^api/genes/(?P<gene_id>.*)$', views.gene_detail),
 ]

backend/metagenedb/settings/django.py

@@ -103,7 +103,7 @@ REST_FRAMEWORK = {
     'DEFAULT_AUTHENTICATION_CLASSES': (
         'rest_framework_jwt.authentication.JSONWebTokenAuthentication',
         'rest_framework.authentication.SessionAuthentication',
-        'rest_framework.authentication.BasicAuthentication',
+        # 'rest_framework.authentication.BasicAuthentication',
     ),
 }
 

docker-compose.dev.yaml

@@ -33,7 +33,7 @@ services:
     build:
       context: ./frontend
     volumes:
-      - ./frontend:/app/frontend:ro
+      - ./frontend:/app:ro
       - '/app/node_modules'
     ports:
       - "8080:8080"

frontend/src/App.vue

@@ -9,6 +9,8 @@
 </template>
 
 <style lang="scss">
+@import './assets/bootstrap/css/bootstrap.min.css';
+
 #app {
   font-family: 'Avenir', Helvetica, Arial, sans-serif;
   -webkit-font-smoothing: antialiased;

frontend/src/assets/bootstrap/css/bootstrap-reboot.css

+/*!
+ * Bootstrap Reboot v4.0.0 (https://getbootstrap.com)
+ * Copyright 2011-2018 The Bootstrap Authors
+ * Copyright 2011-2018 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * Forked from Normalize.css, licensed MIT (https://github.com/necolas/normalize.css/blob/master/LICENSE.md)
+ */
+*,
+*::before,
+*::after {
+  box-sizing: border-box;
+}
+
+html {
+  font-family: sans-serif;
+  line-height: 1.15;
+  -webkit-text-size-adjust: 100%;
+  -ms-text-size-adjust: 100%;
+  -ms-overflow-style: scrollbar;
+  -webkit-tap-highlight-color: transparent;
+}
+
+@-ms-viewport {
+  width: device-width;
+}
+
+article, aside, dialog, figcaption, figure, footer, header, hgroup, main, nav, section {
+  display: block;
+}
+
+body {
+  margin: 0;
+  font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Helvetica Neue", Arial, sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol";
+  font-size: 1rem;
+  font-weight: 400;
+  line-height: 1.5;
+  color: #212529;
+  text-align: left;
+  background-color: #fff;
+}
+
+[tabindex="-1"]:focus {
+  outline: 0 !important;
+}
+
+hr {
+  box-sizing: content-box;
+  height: 0;
+  overflow: visible;
+}
+
+h1, h2, h3, h4, h5, h6 {
+  margin-top: 0;
+  margin-bottom: 0.5rem;
+}
+
+p {
+  margin-top: 0;
+  margin-bottom: 1rem;
+}
+
+abbr[title],
+abbr[data-original-title] {
+  text-decoration: underline;
+  -webkit-text-decoration: underline dotted;
+  text-decoration: underline dotted;
+  cursor: help;
+  border-bottom: 0;
+}
+
+address {
+  margin-bottom: 1rem;
+  font-style: normal;
+  line-height: inherit;
+}
+
+ol,
+ul,
+dl {
+  margin-top: 0;
+  margin-bottom: 1rem;
+}
+
+ol ol,
+ul ul,
+ol ul,
+ul ol {
+  margin-bottom: 0;
+}
+
+dt {
+  font-weight: 700;
+}
+
+dd {
+  margin-bottom: .5rem;
+  margin-left: 0;
+}
+
+blockquote {
+  margin: 0 0 1rem;
+}
+
+dfn {
+  font-style: italic;
+}
+
+b,
+strong {
+  font-weight: bolder;
+}
+
+small {
+  font-size: 80%;
+}
+
+sub,
+sup {
+  position: relative;
+  font-size: 75%;
+  line-height: 0;
+  vertical-align: baseline;
+}
+
+sub {
+  bottom: -.25em;
+}
+
+sup {
+  top: -.5em;
+}
+
+a {
+  color: #007bff;
+  text-decoration: none;
+  background-color: transparent;
+  -webkit-text-decoration-skip: objects;
+}
+
+a:hover {
+  color: #0056b3;
+  text-decoration: underline;
+}
+
+a:not([href]):not([tabindex]) {
+  color: inherit;
+  text-decoration: none;
+}
+
+a:not([href]):not([tabindex]):hover, a:not([href]):not([tabindex]):focus {
+  color: inherit;
+  text-decoration: none;
+}
+
+a:not([href]):not([tabindex]):focus {
+  outline: 0;
+}
+
+pre,
+code,
+kbd,
+samp {
+  font-family: monospace, monospace;
+  font-size: 1em;
+}
+
+pre {
+  margin-top: 0;
+  margin-bottom: 1rem;
+  overflow: auto;
+  -ms-overflow-style: scrollbar;
+}
+
+figure {
+  margin: 0 0 1rem;
+}
+
+img {
+  vertical-align: middle;
+  border-style: none;
+}
+
+svg:not(:root) {
+  overflow: hidden;
+}
+
+table {
+  border-collapse: collapse;
+}
+
+caption {
+  padding-top: 0.75rem;
+  padding-bottom: 0.75rem;
+  color: #6c757d;
+  text-align: left;
+  caption-side: bottom;
+}
+
+th {
+  text-align: inherit;
+}
+
+label {
+  display: inline-block;
+  margin-bottom: .5rem;
+}
+
+button {
+  border-radius: 0;
+}
+
+button:focus {
+  outline: 1px dotted;
+  outline: 5px auto -webkit-focus-ring-color;
+}
+
+input,
+button,
+select,
+optgroup,
+textarea {
+  margin: 0;
+  font-family: inherit;
+  font-size: inherit;
+  line-height: inherit;
+}
+
+button,
+input {
+  overflow: visible;
+}
+
+button,
+select {
+  text-transform: none;
+}
+
+button,
+html [type="button"],
+[type="reset"],
+[type="submit"] {
+  -webkit-appearance: button;
+}
+
+button::-moz-focus-inner,
+[type="button"]::-moz-focus-inner,
+[type="reset"]::-moz-focus-inner,
+[type="submit"]::-moz-focus-inner {
+  padding: 0;
+  border-style: none;
+}
+
+input[type="radio"],
+input[type="checkbox"] {
+  box-sizing: border-box;
+  padding: 0;
+}
+
+input[type="date"],
+input[type="time"],
+input[type="datetime-local"],
+input[type="month"] {
+  -webkit-appearance: listbox;
+}
+
+textarea {
+  overflow: auto;
+  resize: vertical;
+}
+
+fieldset {
+  min-width: 0;
+  padding: 0;
+  margin: 0;
+  border: 0;
+}
+
+legend {
+  display: block;
+  width: 100%;
+  max-width: 100%;
+  padding: 0;
+  margin-bottom: .5rem;
+  font-size: 1.5rem;
+  line-height: inherit;
+  color: inherit;
+  white-space: normal;
+}
+
+progress {
+  vertical-align: baseline;
+}
+
+[type="number"]::-webkit-inner-spin-button,
+[type="number"]::-webkit-outer-spin-button {
+  height: auto;
+}
+
+[type="search"] {
+  outline-offset: -2px;
+  -webkit-appearance: none;
+}
+
+[type="search"]::-webkit-search-cancel-button,
+[type="search"]::-webkit-search-decoration {
+  -webkit-appearance: none;
+}
+
+::-webkit-file-upload-button {
+  font: inherit;
+  -webkit-appearance: button;
+}
+
+output {
+  display: inline-block;
+}
+
+summary {
+  display: list-item;
+  cursor: pointer;
+}
+
+template {
+  display: none;
+}
+
+[hidden] {
+  display: none !important;
+}
+/*# sourceMappingURL=bootstrap-reboot.css.map */
\ No newline at end of file

frontend/src/assets/bootstrap/css/bootstrap-reboot.min.css

+/*!
+ * Bootstrap Reboot v4.0.0 (https://getbootstrap.com)
+ * Copyright 2011-2018 The Bootstrap Authors
+ * Copyright 2011-2018 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * Forked from Normalize.css, licensed MIT (https://github.com/necolas/normalize.css/blob/master/LICENSE.md)
+ */*,::after,::before{box-sizing:border-box}html{font-family:sans-serif;line-height:1.15;-webkit-text-size-adjust:100%;-ms-text-size-adjust:100%;-ms-overflow-style:scrollbar;-webkit-tap-highlight-color:transparent}@-ms-viewport{width:device-width}article,aside,dialog,figcaption,figure,footer,header,hgroup,main,nav,section{display:block}body{margin:0;font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Helvetica Neue",Arial,sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol";font-size:1rem;font-weight:400;line-height:1.5;color:#212529;text-align:left;background-color:#fff}[tabindex="-1"]:focus{outline:0!important}hr{box-sizing:content-box;height:0;overflow:visible}h1,h2,h3,h4,h5,h6{margin-top:0;margin-bottom:.5rem}p{margin-top:0;margin-bottom:1rem}abbr[data-original-title],abbr[title]{text-decoration:underline;-webkit-text-decoration:underline dotted;text-decoration:underline dotted;cursor:help;border-bottom:0}address{margin-bottom:1rem;font-style:normal;line-height:inherit}dl,ol,ul{margin-top:0;margin-bottom:1rem}ol ol,ol ul,ul ol,ul ul{margin-bottom:0}dt{font-weight:700}dd{margin-bottom:.5rem;margin-left:0}blockquote{margin:0 0 1rem}dfn{font-style:italic}b,strong{font-weight:bolder}small{font-size:80%}sub,sup{position:relative;font-size:75%;line-height:0;vertical-align:baseline}sub{bottom:-.25em}sup{top:-.5em}a{color:#007bff;text-decoration:none;background-color:transparent;-webkit-text-decoration-skip:objects}a:hover{color:#0056b3;text-decoration:underline}a:not([href]):not([tabindex]){color:inherit;text-decoration:none}a:not([href]):not([tabindex]):focus,a:not([href]):not([tabindex]):hover{color:inherit;text-decoration:none}a:not([href]):not([tabindex]):focus{outline:0}code,kbd,pre,samp{font-family:monospace,monospace;font-size:1em}pre{margin-top:0;margin-bottom:1rem;overflow:auto;-ms-overflow-style:scrollbar}figure{margin:0 0 1rem}img{vertical-align:middle;border-style:none}svg:not(:root){overflow:hidden}table{border-collapse:collapse}caption{padding-top:.75rem;padding-bottom:.75rem;color:#6c757d;text-align:left;caption-side:bottom}th{text-align:inherit}label{display:inline-block;margin-bottom:.5rem}button{border-radius:0}button:focus{outline:1px dotted;outline:5px auto -webkit-focus-ring-color}button,input,optgroup,select,textarea{margin:0;font-family:inherit;font-size:inherit;line-height:inherit}button,input{overflow:visible}button,select{text-transform:none}[type=reset],[type=submit],button,html [type=button]{-webkit-appearance:button}[type=button]::-moz-focus-inner,[type=reset]::-moz-focus-inner,[type=submit]::-moz-focus-inner,button::-moz-focus-inner{padding:0;border-style:none}input[type=checkbox],input[type=radio]{box-sizing:border-box;padding:0}input[type=date],input[type=datetime-local],input[type=month],input[type=time]{-webkit-appearance:listbox}textarea{overflow:auto;resize:vertical}fieldset{min-width:0;padding:0;margin:0;border:0}legend{display:block;width:100%;max-width:100%;padding:0;margin-bottom:.5rem;font-size:1.5rem;line-height:inherit;color:inherit;white-space:normal}progress{vertical-align:baseline}[type=number]::-webkit-inner-spin-button,[type=number]::-webkit-outer-spin-button{height:auto}[type=search]{outline-offset:-2px;-webkit-appearance:none}[type=search]::-webkit-search-cancel-button,[type=search]::-webkit-search-decoration{-webkit-appearance:none}::-webkit-file-upload-button{font:inherit;-webkit-appearance:button}output{display:inline-block}summary{display:list-item;cursor:pointer}template{display:none}[hidden]{display:none!important}
+/*# sourceMappingURL=bootstrap-reboot.min.css.map */
\ No newline at end of file