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Metagenomics
metagenedb
Commits
e82b1b97
Commit
e82b1b97
authored
Sep 11, 2019
by
Kenzo-Hugo Hillion
♻
Browse files
remove test breaks
parent
0a7c1a08
Pipeline
#14507
passed with stages
in 2 minutes and 13 seconds
Changes
2
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
backend/scripts/populate_db/import_igc_data.py
View file @
e82b1b97
...
...
@@ -102,7 +102,6 @@ class ImportIGCGenes(object):
self
.
updated_genes
+=
response
.
get
(
'updated'
).
get
(
'count'
)
self
.
processed_genes
+=
len
(
chunk_genes
)
logger
.
info
(
"%s Genes processed so far..."
,
self
.
processed_genes
)
break
logger
.
info
(
"[DONE] %s/%s Genes created."
,
self
.
created_genes
,
self
.
total_genes
)
logger
.
info
(
"[DONE] %s/%s Genes updated."
,
self
.
updated_genes
,
self
.
total_genes
)
logger
.
info
(
"[DONE] %s/%s Genes skipped."
,
self
.
skipped_genes
,
self
.
total_genes
)
...
...
backend/scripts/populate_db/import_ncbi_taxonomy.py
View file @
e82b1b97
...
...
@@ -71,7 +71,6 @@ class ImportNCBITaxonomy(object):
self
.
updated_tax
+=
response
.
get
(
'updated'
).
get
(
'count'
)
self
.
processed_tax
+=
len
(
nodes
)
logger
.
info
(
"%s/%s Taxonomy processed so far..."
,
self
.
processed_tax
,
self
.
total_tax
)
break
logger
.
info
(
"[DONE] %s/%s Taxonomy created."
,
self
.
created_tax
,
self
.
total_tax
)
logger
.
info
(
"[DONE] %s/%s Taxonomy updated."
,
self
.
updated_tax
,
self
.
total_tax
)
logger
.
info
(
"[DONE] %s/%s Taxonomy skipped."
,
self
.
skipped_tax
,
self
.
total_tax
)
...
...
@@ -90,7 +89,6 @@ class ImportNCBITaxonomy(object):
self
.
updated_tax
+=
response
.
get
(
'updated'
).
get
(
'count'
)
self
.
processed_tax
+=
len
(
nodes
)
logger
.
info
(
"%s/%s Taxonomy processed so far..."
,
self
.
processed_tax
,
self
.
total_tax
)
break
logger
.
info
(
"[DONE] %s/%s Taxonomy created."
,
self
.
created_tax
,
self
.
total_tax
)
logger
.
info
(
"[DONE] %s/%s Taxonomy updated."
,
self
.
updated_tax
,
self
.
total_tax
)
logger
.
info
(
"[DONE] %s/%s Taxonomy skipped."
,
self
.
skipped_tax
,
self
.
total_tax
)
...
...
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