From f9ded802687f52e570ecf76f268ba8b2d035c549 Mon Sep 17 00:00:00 2001
From: Kenzo-Hugo Hillion <kenzo-hugo.hillion1@pasteur.fr>
Date: Thu, 12 Dec 2019 12:53:23 +0100
Subject: [PATCH] update bioapi version
---
backend/Pipfile.lock | 4 ++--
backend/scripts/populate_db/import_igc_data.py | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/backend/Pipfile.lock b/backend/Pipfile.lock
index 57d5111..c740978 100644
--- a/backend/Pipfile.lock
+++ b/backend/Pipfile.lock
@@ -25,7 +25,7 @@
},
"bioapi": {
"git": "https://github.com/khillion/bioapi.git",
- "ref": "c1430f0668ca15bc5116337110d7a81f0621913a"
+ "ref": "284ce40cd007c35d4e1fbaa394717ae8c2cc6c5d"
},
"certifi": {
"hashes": [
@@ -411,7 +411,7 @@
"sha256:5b26757dc6f79a3b7dc9fab95359328d5747fcb2409d331ea66d0272b90ab2a0",
"sha256:8b995ffe925347a2138d7ac0fe77155e4311a0ea6d6da4f5128fe4b3cbe5ed71"
],
- "markers": "platform_system == 'Darwin'",
+ "markers": "sys_platform == 'darwin'",
"version": "==0.1.0"
},
"astroid": {
diff --git a/backend/scripts/populate_db/import_igc_data.py b/backend/scripts/populate_db/import_igc_data.py
index c95c409..56e325b 100755
--- a/backend/scripts/populate_db/import_igc_data.py
+++ b/backend/scripts/populate_db/import_igc_data.py
@@ -10,7 +10,7 @@ from bioapi import (
MetageneDBCatalogGeneAPI,
MetageneDBCatalogTaxonomyAPI,
MetageneDBCatalogKeggOrthologyAPI,
- MetageneDBCatalogEggNogAPI,
+ MetageneDBCatalogEggNOGAPI,
)
from requests.exceptions import HTTPError
from slugify import slugify
@@ -26,7 +26,7 @@ class ImportIGCGenes(object):
METAGENEDB_TAXONOMY_API = MetageneDBCatalogTaxonomyAPI
METAGENEDB_FUNCTION_API = MetageneDBCatalogFunctionAPI
METAGENEDB_KEGG_API = MetageneDBCatalogKeggOrthologyAPI
- METAGENEDB_EGGNOG_API = MetageneDBCatalogEggNogAPI
+ METAGENEDB_EGGNOG_API = MetageneDBCatalogEggNOGAPI
PHYLUM_COL = 'taxo_phylum'
GENUS_COL = 'taxo_genus'
--
GitLab