Commits · 25fc811219e6b2d4a4a0325e73e5b1b90bb267be · Metagenomics / metagenedb

19 Nov, 2019 4 commits
- fix flake8 · 25fc8112
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  25fc8112
- add vizualization dev tool for profiling and options for script · 7d853553
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  7d853553
- fix handling of taxonomy and way it is skipped · 4a09070c
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  4a09070c
- modify handling of taxonomy · 220b598c
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  220b598c
18 Nov, 2019 2 commits
- add test for togows utils · 69643d1f
  Kenzo-Hugo Hillion authored Nov 18, 2019
  
  69643d1f
- [quick fix] allow creating gene with several KEGG from IGC · c9eb07d8
  Kenzo-Hugo Hillion authored Nov 18, 2019
  
  c9eb07d8
15 Nov, 2019 1 commit
- add detailed option for function API · db3f33e9
  Kenzo-Hugo Hillion authored Nov 15, 2019
  
  db3f33e9
14 Nov, 2019 4 commits
- fix flake8 · eaa9d70a
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  eaa9d70a
- replace endpoint by class to call different external APIs · 0120036a
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  0120036a
- add endpoint to obtain detailed info from kegg through togows · 9d65ac11
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  9d65ac11
- Start testing new view for external requests · db3e5157
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  db3e5157
08 Nov, 2019 1 commit
- Add details when getting taxonomy of function item · 7cd9339c
  Kenzo-Hugo Hillion authored Nov 08, 2019
  
  7cd9339c
06 Nov, 2019 1 commit
- Start working on gene page · 2c67f95f
  Kenzo-Hugo Hillion authored Nov 06, 2019
  
  2c67f95f
05 Nov, 2019 3 commits
- add backend ressources and test option for build hierarchy · e59f15d7
  Kenzo-Hugo Hillion authored Nov 05, 2019
  
  e59f15d7
- remove break and add ressources to postgres · f90f67d0
  Kenzo-Hugo Hillion authored Nov 05, 2019
  
  f90f67d0
- Add script to build hierarchy from backend · 9201ea5e
  Kenzo-Hugo Hillion authored Nov 05, 2019
  
  9201ea5e
04 Nov, 2019 6 commits
- use prefetch and select to improve performances · 266e125e
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  266e125e
- Optimise to not have to build hierarchy everytime · ead2f182
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  ead2f182
- add possibility to skip some steps in script taxo · 86e96103
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  86e96103
- add step to build hierachy in script · 0ea79473
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  0ea79473
- fix test for hierarchy · f4593166
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  f4593166
- Automatically build hiearchy on GET retrieve · 8e08ff30
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  8e08ff30
30 Oct, 2019 1 commit
- Deal with functions in importing IGC genes · 8f59511f
  Kenzo-Hugo Hillion authored Oct 30, 2019
  
  8f59511f
28 Oct, 2019 1 commit
- handle function in bulk for gene and tests · e8a384d4
  Kenzo-Hugo Hillion authored Oct 28, 2019
  
  e8a384d4
22 Oct, 2019 1 commit
- update way to extract m2m fields on bulk lists · 492d4203
  Kenzo-Hugo Hillion authored Oct 22, 2019
  
  492d4203
18 Sep, 2019 1 commit
- add pylint to dev env · 536dd17b
  Kenzo-Hugo Hillion authored Sep 18, 2019
  
  536dd17b
16 Sep, 2019 2 commits
- Fix source when loading KEGG using API · 7fab71d0
  Kenzo-Hugo Hillion authored Sep 16, 2019
  
  7fab71d0
- update README and fix flake8 · 4c71c73b
  Kenzo-Hugo Hillion authored Sep 16, 2019
  
  4c71c73b
12 Sep, 2019 1 commit
- add table for gene to function m2m · 81e4e2eb
  Kenzo-Hugo Hillion authored Sep 12, 2019
  
  81e4e2eb
11 Sep, 2019 4 commits
- remove test breaks · e82b1b97
  Kenzo-Hugo Hillion authored Sep 11, 2019
  
  e82b1b97
- Add steps to return error if duplicate in list · 0a7c1a08
  Kenzo-Hugo Hillion authored Sep 11, 2019
  
  0a7c1a08
- update script to import IGC genes using API · 3c3073ca
  Kenzo-Hugo Hillion authored Sep 11, 2019
  
  3c3073ca
- update script to load taxonomy to go through API · 9b1503a2
  Kenzo-Hugo Hillion authored Sep 11, 2019
  
  9b1503a2
10 Sep, 2019 6 commits
- start using put from list for kegg script · 5cf966b4
  Kenzo-Hugo Hillion authored Sep 10, 2019
  
  5cf966b4
- add function to generate chunks iterator from list · 6eb0b0db
  Kenzo-Hugo Hillion authored Sep 10, 2019
  
  6eb0b0db
- fix flake8 · 9cabee28
  Kenzo-Hugo Hillion authored Sep 10, 2019
  
  9cabee28
- allow put from list on gene · 9eb64580
  Kenzo-Hugo Hillion authored Sep 10, 2019
  
  9eb64580
- Also allow upsert with PUT for taxonomy · 98af56fe
  Kenzo-Hugo Hillion authored Sep 10, 2019
  
  98af56fe
- update put to behave as upsert · a6b89a0e
  Kenzo-Hugo Hillion authored Sep 10, 2019
  
  a6b89a0e
09 Sep, 2019 1 commit
- Clean code · 8924454a
  Kenzo-Hugo Hillion authored Sep 09, 2019
  
  8924454a