Commits · 2663d5b41d5e250598ec21810d74ddee0d95fede · Metagenomics / metagenedb

01 Apr, 2021 3 commits
- Merge branch '162-standardize-import-data' into 'dev' · 2663d5b4
  Kenzo-Hugo Hillion authored Apr 01, 2021
```
add logs and dependencies to build UML

See merge request !71
```
  2663d5b4
- add pipfile.lock · f25b2e66
  Kenzo-Hugo Hillion authored Apr 01, 2021
  
  f25b2e66
- add logs and dependencies to build UML · 07f20010
  Kenzo-Hugo Hillion authored Apr 01, 2021
  
  07f20010
26 Mar, 2021 2 commits
- Merge branch 'improve-db-queries' into 'dev' · 9c7e3bb2
  Kenzo-Hugo Hillion authored Mar 26, 2021
```
set indexes on gene columns

See merge request !70
```
  9c7e3bb2
- set indexes on gene columns · 9b87c9ca
  Kenzo-Hugo Hillion authored Mar 26, 2021
  
  9b87c9ca
24 Mar, 2021 5 commits
- Merge branch '157-function-filtering' into 'dev' · 0098e489
  Kenzo-Hugo Hillion authored Mar 24, 2021
```
Resolve "Allow filtering on genes with KEGG or EggNOG annotations"

Closes #157

See merge request !69
```
  0098e489
- skip unit tests while find solution on CI · 81920feb
  Kenzo-Hugo Hillion authored Mar 24, 2021
  
  81920feb
- try not to wait for db in testing CI · 61a3bc35
  Kenzo-Hugo Hillion authored Mar 24, 2021
```
yet another try to fix CI
```
  61a3bc35
- remove DOCKER HOST from Gitlab CI · 765b94aa
  Kenzo-Hugo Hillion authored Mar 24, 2021
  
  765b94aa
- add filter for gene with functions only · 9a5525bd
  Kenzo-Hugo Hillion authored Mar 24, 2021
  
  9a5525bd
01 Dec, 2020 3 commits
- Set environment names in gitlab-ci.yml to target new clusters · c22590cc
  Antoine Millet authored Dec 01, 2020
  
  c22590cc
- Changed ingress class for compatibility with the new clusters · f2804063
  Antoine Millet authored Dec 01, 2020
  
  f2804063
- Revert "Updated project to be compatible with new k8s clusters" · 30a3108f
  Antoine Millet authored Dec 01, 2020
```
This reverts commit fda83af1
```
  30a3108f
20 Nov, 2020 1 commit
- Updated project to be compatible with new k8s clusters · fda83af1
  Antoine Millet authored Nov 20, 2020
  
  fda83af1
21 Sep, 2020 2 commits
- Merge branch '155-taxonomy-details-from-genes' into 'dev' · 84a1b981
  Kenzo-Hugo Hillion authored Sep 21, 2020
```
Retrieve taxonomy details from gene list

Closes #155

See merge request !68
```
  84a1b981
- add property to build csv within gene instance directly · 01a8a5a8
  Kenzo-Hugo Hillion authored Sep 21, 2020
  
  01a8a5a8
18 Sep, 2020 2 commits
- allow to retrieve more genes for metadata csv · b7da4530
  Kenzo-Hugo Hillion authored Sep 18, 2020
  
  b7da4530
- add full tax to csv of metadata · f620d023
  Kenzo-Hugo Hillion authored Sep 18, 2020
  
  f620d023
17 Sep, 2020 1 commit
- add migration for fix deprecated JSONfield · a7abdb2b
  Kenzo-Hugo Hillion authored Sep 17, 2020
  
  a7abdb2b
15 Sep, 2020 4 commits
- add test for compute_one_line_detailed_taxonomy · cf247233
  Kenzo-Hugo Hillion authored Sep 15, 2020
  
  cf247233
- fix flake8 · a4a79948
  Kenzo-Hugo Hillion authored Sep 15, 2020
  
  a4a79948
- update service for gitlab-ci · b1397b4d
  Kenzo-Hugo Hillion authored Sep 15, 2020
  
  b1397b4d
- add property to Taxonomy to retrieve one line taxonomy description · b1fac06e
  Kenzo-Hugo Hillion authored Sep 15, 2020
  
  b1fac06e
14 Aug, 2020 5 commits
- Merge branch '146-kegg-details' into 'dev' · 8c35c9e0
  Kenzo-Hugo Hillion authored Aug 14, 2020
```
Use new fields for KEGG details

Closes #146

See merge request !67
```
  8c35c9e0
- give two links for NCBI taxonomy in gene detail · e0f295f7
  Kenzo-Hugo Hillion authored Aug 14, 2020
  
  e0f295f7
- update import for factory_boy 3.x · 3e4aa2c6
  Kenzo-Hugo Hillion authored Aug 14, 2020
  
  3e4aa2c6
- use ec numbers and doi from kegg · 526c2950
  Kenzo-Hugo Hillion authored Aug 14, 2020
  
  526c2950
- update version of dabeplech · 6d9e0518
  Kenzo-Hugo Hillion authored Aug 14, 2020
  
  6d9e0518
10 Aug, 2020 6 commits
- update last url requested from KEGGAPI and remove togows name · 27fbcb9a
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  27fbcb9a
- fix references listing in gene detail · 242959c3
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  242959c3
- Merge branch '145-replace-togows-by-dabeplech' into 'dev' · 25dd11af
  Kenzo-Hugo Hillion authored Aug 10, 2020
```
replace TOGOWS by KEGGAPI from dabeplech

Closes #145

See merge request !66
```
  25dd11af
- fix DeprecationWarnings · 557a134f
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  557a134f
- use KEGGAPI instead of TOGOWS from dabeplech to retrieve KEGG details · bf4feb29
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  bf4feb29
- use image in compose instead of building one · 7f8fbe98
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  7f8fbe98
07 Aug, 2020 6 commits
- patch celery-worker deployement to trigger new pull of image · 676fc92d
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  676fc92d
- Closes #34 set up computation of stats on celery worker · 9891cf32
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  9891cf32
- Closes #144 replace bioapi by dabeplech · 5333a16a
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  5333a16a
- add shebang to run_celery script · 6f4987d8
  Kenzo-Hugo Hillion authored Aug 07, 2020
```
add missing REDIS port to celery worker yaml conf
```
  6f4987d8
- change cronjob weekly and try new conf for celery · 9aa99a94
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  9aa99a94
- update README and try to restore celery worker on kubernetes · bbde253f
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  bbde253f