Commits · 2fe3bd45d0f090e4e7fbfcff76b3eb162117d86d · Metagenomics / metagenedb · GitLab

02 Dec, 2019 2 commits
- add route to retrieve counts of taxonomical annotations per level · 2fe3bd45
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  2fe3bd45
- Improve perf for counting windows · bd68a8c4
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  bd68a8c4
29 Nov, 2019 1 commit
- add filter on presence absence of tax and functions · 8bfe6c63
  Kenzo-Hugo Hillion authored Nov 29, 2019
  
  8bfe6c63
27 Nov, 2019 4 commits
- add test for gene_length API · e6b74ca2
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  e6b74ca2
- Improve route for gene_length · ac12a76b
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  ac12a76b
- Add profiling tool for performance issues · 8cfa5c1e
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  8cfa5c1e
- Return allowed query params for 422 · d8c73868
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  d8c73868
22 Nov, 2019 7 commits
- Check if function exists in the db or remove it from payload · 10c4b4ad
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  10c4b4ad
- Add page_size and isolate default classes for django settings · 83746eaa
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  83746eaa
- Update way of getting taxonomy while importing IGC genes · 5635b146
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  5635b146
- Add method to build local mapping for genus and phylum · 04881127
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  04881127
- create fuzzylowertext and refactor · 52f4fa56
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  52f4fa56
- Improve ids for item factory for tests · 1297a106
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  1297a106
- allow page as query param by default · f8dbb4e9
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  f8dbb4e9
21 Nov, 2019 3 commits
- add tests for wrong query params · c6c3e257
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  c6c3e257
- add validation of qparams for all bulkviewset views · 1ba5dc9a
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  1ba5dc9a
- remove useless code · 81641e78
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  81641e78
20 Nov, 2019 1 commit
- Add validation for query params · 907a5126
  Kenzo-Hugo Hillion authored Nov 20, 2019
  
  907a5126
19 Nov, 2019 7 commits
- Add tests for custom retrieve function · d3823222
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  d3823222
- return db_data if source not found · 51407c65
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  51407c65
- raise notimplementederror for source with no API · dff4e9c0
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  dff4e9c0
- fix flake8 · 25fc8112
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  25fc8112
- add vizualization dev tool for profiling and options for script · 7d853553
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  7d853553
- fix handling of taxonomy and way it is skipped · 4a09070c
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  4a09070c
- modify handling of taxonomy · 220b598c
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  220b598c
18 Nov, 2019 2 commits
- add test for togows utils · 69643d1f
  Kenzo-Hugo Hillion authored Nov 18, 2019
  
  69643d1f
- [quick fix] allow creating gene with several KEGG from IGC · c9eb07d8
  Kenzo-Hugo Hillion authored Nov 18, 2019
  
  c9eb07d8
15 Nov, 2019 1 commit
- add detailed option for function API · db3f33e9
  Kenzo-Hugo Hillion authored Nov 15, 2019
  
  db3f33e9
14 Nov, 2019 4 commits
- fix flake8 · eaa9d70a
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  eaa9d70a
- replace endpoint by class to call different external APIs · 0120036a
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  0120036a
- add endpoint to obtain detailed info from kegg through togows · 9d65ac11
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  9d65ac11
- Start testing new view for external requests · db3e5157
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  db3e5157
08 Nov, 2019 1 commit
- Add details when getting taxonomy of function item · 7cd9339c
  Kenzo-Hugo Hillion authored Nov 08, 2019
  
  7cd9339c
06 Nov, 2019 1 commit
- Start working on gene page · 2c67f95f
  Kenzo-Hugo Hillion authored Nov 06, 2019
  
  2c67f95f
05 Nov, 2019 3 commits
- add backend ressources and test option for build hierarchy · e59f15d7
  Kenzo-Hugo Hillion authored Nov 05, 2019
  
  e59f15d7
- remove break and add ressources to postgres · f90f67d0
  Kenzo-Hugo Hillion authored Nov 05, 2019
  
  f90f67d0
- Add script to build hierarchy from backend · 9201ea5e
  Kenzo-Hugo Hillion authored Nov 05, 2019
  
  9201ea5e
04 Nov, 2019 3 commits
- use prefetch and select to improve performances · 266e125e
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  266e125e
- Optimise to not have to build hierarchy everytime · ead2f182
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  ead2f182
- add possibility to skip some steps in script taxo · 86e96103
  Kenzo-Hugo Hillion authored Nov 04, 2019
  
  86e96103