Commits · 5333a16ab2410d975c6eeac84141ba362ab0e565 · Metagenomics / metagenedb · GitLab

07 Aug, 2020 4 commits
- Closes #144 replace bioapi by dabeplech · 5333a16a
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  5333a16a
- add shebang to run_celery script · 6f4987d8
  Kenzo-Hugo Hillion authored Aug 07, 2020
```
add missing REDIS port to celery worker yaml conf
```
  6f4987d8
- change cronjob weekly and try new conf for celery · 9aa99a94
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  9aa99a94
- update README and try to restore celery worker on kubernetes · bbde253f
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  bbde253f
02 Jul, 2020 1 commit
- finish command to generate light db · 2cc71fd9
  Kenzo-Hugo Hillion authored Jul 02, 2020
  
  2cc71fd9
30 Jun, 2020 1 commit
- start script to create light db · eb644605
  Kenzo-Hugo Hillion authored Jun 30, 2020
  
  eb644605
29 Jun, 2020 1 commit
- empty README and move to wiki pages · fce01755
  Kenzo-Hugo Hillion authored Jun 29, 2020
  
  fce01755
22 Jun, 2020 4 commits
- improve performances to get CSV from genes endpoint · 50cb8355
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  50cb8355
- Add button on frontend to download csv from metadata list · 9551934d
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  9551934d
- add methods and test to get csv from genes endpoint · 271d2a3b
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  271d2a3b
- create csv qparam for genes and refactor cache for count · bd33850f
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  bd33850f
18 Jun, 2020 2 commits
- add allowed host for non debug backend · e03dbadd
  Kenzo-Hugo Hillion authored Jun 18, 2020
  
  e03dbadd
- max number of fasta sequences in django env · ad8a488c
  Kenzo-Hugo Hillion authored Jun 18, 2020
  
  ad8a488c
17 Jun, 2020 2 commits
- refactor and add limit of 100000 fasta sequences · ebf8da30
  Kenzo-Hugo Hillion authored Jun 17, 2020
  
  ebf8da30
- allow retrieving fasta file from gene list · 317bb154
  Kenzo-Hugo Hillion authored Jun 17, 2020
  
  317bb154
11 Jun, 2020 1 commit
- add eggnog card and improve gene details page · edb4828e
  Kenzo-Hugo Hillion authored Jun 11, 2020
  
  edb4828e
04 Jun, 2020 5 commits
- add migration and remove log print · 0e2273b7
  Kenzo-Hugo Hillion authored Jun 04, 2020
  
  0e2273b7
- fix flake8 · 919c3d78
  Kenzo-Hugo Hillion authored Jun 04, 2020
  
  919c3d78
- add statistics PUT and POST and fix Kegg Eggnog permissions · 3ed89f51
  Kenzo-Hugo Hillion authored Jun 04, 2020
  
  3ed89f51
- perform clean of statistics only when specified · 6053af0b
  Kenzo-Hugo Hillion authored Jun 04, 2020
  
  6053af0b
- allow to fix gene source when computing statistics · b54a6909
  Kenzo-Hugo Hillion authored Jun 04, 2020
  
  b54a6909
03 Jun, 2020 1 commit
- Use redis cache for paginator count · 74b3ce0d
  Kenzo-Hugo Hillion authored Jun 03, 2020
  
  74b3ce0d
02 Jun, 2020 1 commit
- Add filter on taxonomy id and use it on frontend · 31ddc457
  Kenzo-Hugo Hillion authored Jun 02, 2020
  
  31ddc457
29 May, 2020 2 commits
- Start adding filtering with a given taxonomy · c4505d65
  Kenzo-Hugo Hillion authored May 29, 2020
  
  c4505d65
- add tool to compute all taxonomy entries present in at least one gene of the catalog · d6ad306e
  Kenzo-Hugo Hillion authored May 29, 2020
  
  d6ad306e
14 May, 2020 1 commit
- add taxonomy repartition for all gene sources · d96600fc
  Kenzo-Hugo Hillion authored May 14, 2020
  
  d96600fc
13 May, 2020 2 commits
- fix flake8 · d61bc345
  Kenzo-Hugo Hillion authored May 13, 2020
  
  d61bc345
- add gene length computation for different gene source and update front · 6a851eb1
  Kenzo-Hugo Hillion authored May 13, 2020
  
  6a851eb1
12 May, 2020 3 commits
- more effecient way compute no functions genes · 8ac32cc0
  Kenzo-Hugo Hillion authored May 12, 2020
  
  8ac32cc0
- compute counts for all, virgo and igc genes · cfecdeaa
  Kenzo-Hugo Hillion authored May 12, 2020
  
  cfecdeaa
- add options and way to clean all statistics · 50ec042e
  Kenzo-Hugo Hillion authored May 12, 2020
  
  50ec042e
11 May, 2020 5 commits
- remove dummy count for paginator · c529bad7
  Kenzo-Hugo Hillion authored May 11, 2020
  
  c529bad7
- add dummy count number for paginator · 95ed8a65
  Kenzo-Hugo Hillion authored May 11, 2020
  
  95ed8a65
- use source on frontend · e90b0218
  Kenzo-Hugo Hillion authored May 11, 2020
  
  e90b0218
- add taxonomy annotations for VIRGO genes · 55f6ce95
  Kenzo-Hugo Hillion authored May 11, 2020
  
  55f6ce95
- refactor taxonomy handling when importing genes · a6bc8b0f
  Kenzo-Hugo Hillion authored May 11, 2020
  
  a6bc8b0f
06 May, 2020 1 commit
- do not erase kegg while linking eggnog for virgo · 657d1d9e
  Kenzo-Hugo Hillion authored May 06, 2020
  
  657d1d9e
05 May, 2020 2 commits
- add script to add EggNOG annotations from VIRGO · e346db16
  Kenzo-Hugo Hillion authored May 05, 2020
  
  e346db16
- add parser for eggnog from Virgo · 534effc0
  Kenzo-Hugo Hillion authored May 05, 2020
  
  534effc0
04 May, 2020 1 commit
- add end to end test for sequences creation of genes · 1a863324
  Kenzo-Hugo Hillion authored May 04, 2020
  
  1a863324