Commits · 557a134f5c685eb2929da0bad3b46dadd79dfd43 · Metagenomics / metagenedb

10 Aug, 2020 3 commits
- fix DeprecationWarnings · 557a134f
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  557a134f
- use KEGGAPI instead of TOGOWS from dabeplech to retrieve KEGG details · bf4feb29
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  bf4feb29
- use image in compose instead of building one · 7f8fbe98
  Kenzo-Hugo Hillion authored Aug 10, 2020
  
  7f8fbe98
07 Aug, 2020 6 commits
- patch celery-worker deployement to trigger new pull of image · 676fc92d
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  676fc92d
- Closes #34 set up computation of stats on celery worker · 9891cf32
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  9891cf32
- Closes #144 replace bioapi by dabeplech · 5333a16a
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  5333a16a
- add shebang to run_celery script · 6f4987d8
  Kenzo-Hugo Hillion authored Aug 07, 2020
```
add missing REDIS port to celery worker yaml conf
```
  6f4987d8
- change cronjob weekly and try new conf for celery · 9aa99a94
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  9aa99a94
- update README and try to restore celery worker on kubernetes · bbde253f
  Kenzo-Hugo Hillion authored Aug 07, 2020
  
  bbde253f
02 Jul, 2020 2 commits
- Merge branch '140-update-documentation' into 'dev' · 126032cf
  Kenzo-Hugo Hillion authored Jul 02, 2020
```
Dev documentation to run metageneDB locally

Closes #140

See merge request !65
```
  126032cf
- finish command to generate light db · 2cc71fd9
  Kenzo-Hugo Hillion authored Jul 02, 2020
  
  2cc71fd9
01 Jul, 2020 6 commits
- Merge branch 'dev' into 140-update-documentation · 931f67e8
  Kenzo-Hugo Hillion authored Jul 01, 2020
  
  931f67e8
- add template for issues and merge request · c9b0d9b3
  Kenzo-Hugo Hillion authored Jul 01, 2020
  
  c9b0d9b3
- add issue template · 5a3e8899
  Kenzo-Hugo Hillion authored Jul 01, 2020
  
  5a3e8899
- Merge branch 'dev' into 'master' · c1cf1f13
  Kenzo-Hugo Hillion authored Jul 01, 2020
```
Update prod with new features

See merge request !64
```
  c1cf1f13
- Add issue_templates directory · 8f46bd32
  Kenzo-Hugo Hillion authored Jul 01, 2020
  
  8f46bd32
- Add .gitlab directory · d494cbc1
  Kenzo-Hugo Hillion authored Jul 01, 2020
  
  d494cbc1
30 Jun, 2020 1 commit
- start script to create light db · eb644605
  Kenzo-Hugo Hillion authored Jun 30, 2020
  
  eb644605
29 Jun, 2020 1 commit
- empty README and move to wiki pages · fce01755
  Kenzo-Hugo Hillion authored Jun 29, 2020
  
  fce01755
25 Jun, 2020 4 commits
- Start updating README · bd2b1c01
  Kenzo-Hugo Hillion authored Jun 25, 2020
  
  bd2b1c01
- Merge branch '135-comparison-no-data' into 'dev' · b1bbbe2d
  Kenzo-Hugo Hillion authored Jun 25, 2020
```
Handle no data for histograms and doughnut

Closes #135

See merge request !63
```
  b1bbbe2d
- display legend of doughnut only when graph is present · 10c72911
  Kenzo-Hugo Hillion authored Jun 25, 2020
  
  10c72911
- refactor and handle no data in components #135 · fb873d72
  Kenzo-Hugo Hillion authored Jun 25, 2020
  
  fb873d72
24 Jun, 2020 6 commits
- Merge branch '138-link-to-ncbi-cog' into 'dev' · 28ac30ab
  Kenzo-Hugo Hillion authored Jun 24, 2020
```
COG to have links to NCBI pages

Closes #138

See merge request !62
```
  28ac30ab
- add COG link to NCBI to gene detail card · 06e1f530
  Kenzo-Hugo Hillion authored Jun 24, 2020
  
  06e1f530
- add COG NCBI links to gene list · 55c09450
  Kenzo-Hugo Hillion authored Jun 24, 2020
  
  55c09450
- Merge branch '139-improve-download' into 'dev' · a0cc0c0d
  Kenzo-Hugo Hillion authored Jun 24, 2020
```
Resolve "Improve download of csv and fasta"

Closes #139 and #134

See merge request !61
```
  a0cc0c0d
- handle error for gene list · 3250418d
  Kenzo-Hugo Hillion authored Jun 24, 2020
  
  3250418d
- add component to display downloading for fasta and csv · b474d6dc
  Kenzo-Hugo Hillion authored Jun 24, 2020
  
  b474d6dc
23 Jun, 2020 2 commits
- dynamically build name based on filters · 3e81ad68
  Kenzo-Hugo Hillion authored Jun 23, 2020
  
  3e81ad68
- Merge branch '126-extract-table-csv' into 'dev' · f9aca3b8
  Kenzo-Hugo Hillion authored Jun 23, 2020
```
Extract table from gene list

Closes #126

See merge request !60
```
  f9aca3b8
22 Jun, 2020 4 commits
- improve performances to get CSV from genes endpoint · 50cb8355
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  50cb8355
- Add button on frontend to download csv from metadata list · 9551934d
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  9551934d
- add methods and test to get csv from genes endpoint · 271d2a3b
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  271d2a3b
- create csv qparam for genes and refactor cache for count · bd33850f
  Kenzo-Hugo Hillion authored Jun 22, 2020
  
  bd33850f
18 Jun, 2020 5 commits
- unique frontend for the moment with unique app title · cf322915
  Kenzo-Hugo Hillion authored Jun 18, 2020
  
  cf322915
- Merge branch 'dev' into 'master' · 813d2bca
  Kenzo-Hugo Hillion authored Jun 18, 2020
```
Prod

See merge request !59
```
  813d2bca
- add allowed host for non debug backend · e03dbadd
  Kenzo-Hugo Hillion authored Jun 18, 2020
  
  e03dbadd
- Merge branch '99-fasta-from-gene-list' into 'dev' · dad5df42
  Kenzo-Hugo Hillion authored Jun 18, 2020
```
Obtain fasta for a given query

Closes #99

See merge request !58
```
  dad5df42
- max number of fasta sequences in django env · ad8a488c
  Kenzo-Hugo Hillion authored Jun 18, 2020
  
  ad8a488c