Commits · 955eccd4c433c5090e75ca527d70c6f53fc55b14 · Metagenomics / metagenedb

04 Mar, 2020 1 commit
- add flower and portainer and test celery · 955eccd4
  Kenzo-Hugo Hillion authored Mar 04, 2020
  
  955eccd4
11 Feb, 2020 2 commits
- Start adding celery to application · aaf9cf48
  Kenzo-Hugo Hillion authored Feb 11, 2020
  
  aaf9cf48
- update IGC sequences script to allow skipping of first n sequences · 67bb84de
  Kenzo-Hugo Hillion authored Feb 11, 2020
  
  67bb84de
10 Feb, 2020 4 commits
- Merge branch '105-filter-on-kegg-KO' into 'dev' · 2e3eb319
  Kenzo-Hugo Hillion authored Feb 10, 2020
```
Filter gene on a given KEGG or EggNOG ID of gene list

Closes #105

See merge request !42
```
  2e3eb319
- add way of filtering on a given KEGG or EggNOG ID · 42074728
  Kenzo-Hugo Hillion authored Feb 10, 2020
  
  42074728
- refacto genes.vue · 08d2a370
  Kenzo-Hugo Hillion authored Feb 10, 2020
  
  08d2a370
- Merge branch '100-sequence-from-api' into 'dev' · 2d52654e
  Kenzo-Hugo Hillion authored Feb 10, 2020
```
Add sequence to endpoint and use in Front

Closes #100 and #101

See merge request !41
```
  2d52654e
07 Feb, 2020 3 commits
- add gene filters for taxonomy id and function_id · d9b2b815
  Kenzo-Hugo Hillion authored Feb 07, 2020
  
  d9b2b815
- add sequence to gene detail view · f38fdedf
  Kenzo-Hugo Hillion authored Feb 07, 2020
  
  f38fdedf
- Increase Kubernetes ressources backend and postgres · 330b8882
  Kenzo-Hugo Hillion authored Feb 07, 2020
  
  330b8882
06 Feb, 2020 2 commits
- Merge branch '98-import-igc-sequences' into 'dev' · 59b54cc8
  Kenzo-Hugo Hillion authored Feb 06, 2020
```
Import gene sequences from fa.gz IGC file

Closes #98

See merge request !40
```
  59b54cc8
- add script to import gene sequences from fa.gz IGC file · 03017054
  Kenzo-Hugo Hillion authored Feb 06, 2020
  
  03017054
05 Feb, 2020 4 commits
- get back to previous cronjob · 092da880
  Kenzo-Hugo Hillion authored Feb 05, 2020
  
  092da880
- Merge branch '96-sequences-source-in-genes' into 'dev' · 658b4a0e
  Kenzo-Hugo Hillion authored Feb 05, 2020
```
Add source and sequence fields to Gene model

Closes #96

See merge request !39
```
  658b4a0e
- add source and sequence fields to Gene model · 756d1168
  Kenzo-Hugo Hillion authored Feb 05, 2020
  
  756d1168
- modify args for cronjob · de03a574
  Kenzo-Hugo Hillion authored Feb 05, 2020
  
  de03a574
03 Feb, 2020 2 commits
- Merge branch '30-hide-fields-big-requests-django-admin' into 'dev' · 4e567e3a
  Kenzo-Hugo Hillion authored Feb 03, 2020
```
Hide fields that leads to consuming requests in Django admin

Closes #30

See merge request !38
```
  4e567e3a
- hide fields that leads to consuming requests · 7707f5e2
  Kenzo-Hugo Hillion authored Feb 03, 2020
  
  7707f5e2
31 Jan, 2020 4 commits
- Increase timeout and try compute taxo repartition in cronjob · bf228749
  Kenzo-Hugo Hillion authored Jan 31, 2020
```
only obtain token from backend for the moment
```
  bf228749
- try new image with jq · 9fd8679a
  Kenzo-Hugo Hillion authored Jan 31, 2020
  
  9fd8679a
- Try to obtain token from cronjob for auth · 005f5ce7
  Kenzo-Hugo Hillion authored Jan 31, 2020
```
fix link to retrieve token

remove wrong character cronjob

Try to first obtain token
```
  005f5ce7
- use tax ID instead of name for link to ncbi · 403e1a72
  Kenzo-Hugo Hillion authored Jan 31, 2020
  
  403e1a72
23 Jan, 2020 1 commit
- Try to lint frontend and see if front works on kubernetes · de39d6e4
  Kenzo-Hugo Hillion authored Jan 23, 2020
  
  de39d6e4
14 Jan, 2020 1 commit
- cleaning up frontend · 11b0f357
  Kenzo-Hugo Hillion authored Jan 14, 2020
  
  11b0f357
13 Jan, 2020 1 commit
- Try to fix #93 with class rank name confusion · 3bca7c7d
  Kenzo-Hugo Hillion authored Jan 13, 2020
  
  3bca7c7d
08 Jan, 2020 2 commits
- Merge branch '87-improve-gene-list' into 'dev' · 1540a5c0
  Kenzo-Hugo Hillion authored Jan 08, 2020
```
Improve gene list on frontend and API optimization

Closes #77 and #87

See merge request !36
```
  1540a5c0
- add search bar for genes · bf7fbfb6
  Kenzo-Hugo Hillion authored Jan 08, 2020
  
  bf7fbfb6
07 Jan, 2020 1 commit
- add filtering to gene list · 1bcbca8c
  Kenzo-Hugo Hillion authored Jan 07, 2020
  
  1bcbca8c
06 Jan, 2020 6 commits
- Start improving gene list · 1c69e764
  Kenzo-Hugo Hillion authored Jan 06, 2020
  
  1c69e764
- Merge branch '85-change-hierarchy-model' into 'dev' · 1332e720
  Kenzo-Hugo Hillion authored Jan 06, 2020
```
Keep all hierarchy of a given taxonomy in the hierarchy field

Closes #85

See merge request !35
```
  1332e720
- add more efficient way of building hierarchy · 531675bf
  Kenzo-Hugo Hillion authored Jan 06, 2020
  
  531675bf
- add unit to length of gene · 92b47fd0
  Kenzo-Hugo Hillion authored Jan 06, 2020
  
  92b47fd0
- Dynamically generate link for taxonomy gene detail · 27e22312
  Kenzo-Hugo Hillion authored Jan 06, 2020
  
  27e22312
- add method to build chunks of dict · aaa45ed1
  Kenzo-Hugo Hillion authored Jan 06, 2020
  
  aaa45ed1
04 Jan, 2020 1 commit
- add url to taxonomy in gene detail · 3fe67af1
  Kenzo-Hugo Hillion authored Jan 04, 2020
  
  3fe67af1
03 Jan, 2020 2 commits
- update front end to use new hierarchy format from server · f33d4f6a
  Kenzo-Hugo Hillion authored Jan 03, 2020
  
  f33d4f6a
- update backend with new hierarchy model · 77ae83bb
  Kenzo-Hugo Hillion authored Jan 03, 2020
  
  77ae83bb
02 Jan, 2020 1 commit
- Change size of legend for histogram · 112da486
  Kenzo-Hugo Hillion authored Jan 02, 2020
  
  112da486
31 Dec, 2019 2 commits
- Merge branch '84-improve-taxonomy-details' into 'dev' · 5742fc68
  Kenzo-Hugo Hillion authored Dec 31, 2019
```
Improve taxonomy representation for an entry

Closes #84

See merge request !34
```
  5742fc68
- use slider for histogram parameters · 4c486ace
  Kenzo-Hugo Hillion authored Dec 31, 2019
  
  4c486ace