Commits · a77ffe7bcc40521b1910341b58c4562d8850514a · Metagenomics / metagenedb

26 Aug, 2019 3 commits
- Refactor script into classes and start using API · a77ffe7b
  Kenzo-Hugo Hillion authored Aug 26, 2019
  
  a77ffe7b
- Add logger to requests · 86a4744d
  Kenzo-Hugo Hillion authored Aug 26, 2019
  
  86a4744d
- make common class for API calls · 6743c3d3
  Kenzo-Hugo Hillion authored Aug 26, 2019
  
  6743c3d3
23 Aug, 2019 2 commits
- start class to contact metagenedb api · 197b32bd
  Kenzo-Hugo Hillion authored Aug 23, 2019
  
  197b32bd
- add upsert method to genes API · 77df3e6f
  Kenzo-Hugo Hillion authored Aug 23, 2019
  
  77df3e6f
22 Aug, 2019 3 commits
- Also add gene name in frontend · 3997c0ad
  Kenzo-Hugo Hillion authored Aug 22, 2019
  
  3997c0ad
- Change gene_id to slugfield · e400f19c
  Kenzo-Hugo Hillion authored Aug 22, 2019
  
  e400f19c
- Temporary remove permission for create gene · e2f7adf6
  Kenzo-Hugo Hillion authored Aug 22, 2019
  
  e2f7adf6
09 Aug, 2019 1 commit
- Merge branch '31-factory-boy-tests' into 'dev' · 1ae71133
  Kenzo-Hugo Hillion authored Aug 09, 2019
```
start using factory boy for tests

Closes #31

See merge request !11
```
  1ae71133
08 Aug, 2019 1 commit
- start using factory boy for tests · c6933a0c
  Kenzo-Hugo Hillion authored Aug 08, 2019
  
  c6933a0c
07 Aug, 2019 6 commits
- Merge branch '43-doc-swagger' into 'dev' · b0ae5b9e
  Kenzo-Hugo Hillion authored Aug 07, 2019
```
Generate Documentation for the backend API

Closes #43

See merge request !10
```
  b0ae5b9e
- change name gene_length to length · ba20e779
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  ba20e779
- create custom API documentation for gene_length endpoint · 0e823d06
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  0e823d06
- change name gene length to length · 7fb4d79e
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  7fb4d79e
- make gene length positive only · 65ee2b07
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  65ee2b07
- add basis for swagger documentation of API · 65eab49d
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  65eab49d
06 Aug, 2019 4 commits
- Merge branch 'dev' of gitlab.pasteur.fr:metagenomics/metagenedb into dev · 70c740a1
  Kenzo-Hugo Hillion authored Aug 06, 2019
  
  70c740a1
- Change status when no content for gene_length · b63f5670
  Kenzo-Hugo Hillion authored Aug 06, 2019
  
  b63f5670
- Merge branch '39-secrets-in-ci' into 'dev' · 61a1cd77
  Kenzo-Hugo Hillion authored Aug 06, 2019
```
Resolve "Create secrets for postgres from gitlab CI"

Closes #39 and #36

See merge request !9
```
  61a1cd77
- Resolve "Create secrets for postgres from gitlab CI" · 89c3e49e
  Kenzo-Hugo Hillion authored Aug 06, 2019
  
  89c3e49e
05 Aug, 2019 9 commits
- restrict deployement to dev branch · ecd074eb
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  ecd074eb
- Merge branch '40-import-taxo-genes' into 'master' · fd935b95
  Kenzo-Hugo Hillion authored Aug 05, 2019
```
Add taxonomy information to IGC genes

Closes #40

See merge request !8
```
  fd935b95
- Add taxonomy to Gene model · f5da1cca
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  f5da1cca
- reformat parser for IGC and add tests · 25377fe4
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  25377fe4
- Merge branch '27-backend-cleaning' into 'master' · d2949072
  Kenzo-Hugo Hillion authored Aug 05, 2019
```
Resolve "Reorganize backend architecture"

Closes #27 and #33

See merge request !7
```
  d2949072
- cleaning up backend and rm useless code · 9ea066fd
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  9ea066fd
- fix backend urls · 0ee67a41
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  0ee67a41
- tell nginx it needs frontend to fix #33 · 06936bc6
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  06936bc6
- Fix test and add url namespaces · f5d044eb
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  f5d044eb
02 Aug, 2019 5 commits
- use pagination with page number · 4352eea6
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  4352eea6
- add default pagination for list in API · 163618b9
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  163618b9
- Use ViewSet for Gene API · ddb2bfe5
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  ddb2bfe5
- reorganize API for catalog · 3b867015
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  3b867015
- Start cleaning backend and moving account to API · 51720f4c
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  51720f4c
01 Aug, 2019 4 commits
- Merge branch '28-remove-insertion-model' into 'master' · 802c9c13
  Kenzo-Hugo Hillion authored Aug 01, 2019
```
Replace custom insertion_model by serializers

Closes #28

See merge request !6
```
  802c9c13
- Replace custom insertion_model by serializers · 0f854f02
  Kenzo-Hugo Hillion authored Aug 01, 2019
  
  0f854f02
- Merge branch '11-kubernetes-setup' into 'master' · a569de25
  Kenzo-Hugo Hillion authored Aug 01, 2019
```
Set up Kubernetes for the project

Closes #11

See merge request !5
```
  a569de25
- Change image link for test · 559197ee
  Kenzo-Hugo Hillion authored Aug 01, 2019
```
get back to latest postgres

change service to test only

remove k8s
```
  559197ee
19 Jul, 2019 2 commits
- Merge branch '23-taxonomy-model' into 'master' · 5ae2909a
  Kenzo-Hugo Hillion authored Jul 19, 2019
```
add superkingdom and improve performances

Closes #23

See merge request !4
```
  5ae2909a
- Merge branch '23-taxonomy-model' into 'master' · 365da9d0
  Kenzo-Hugo Hillion authored Jul 19, 2019
```
Integrate taxonomy to database

Closes #23

See merge request !3
```
  365da9d0