Commits · a77ffe7bcc40521b1910341b58c4562d8850514a · Metagenomics / metagenedb

26 Aug, 2019 3 commits
- Refactor script into classes and start using API · a77ffe7b
  Kenzo-Hugo Hillion authored Aug 26, 2019
  
  a77ffe7b
- Add logger to requests · 86a4744d
  Kenzo-Hugo Hillion authored Aug 26, 2019
  
  86a4744d
- make common class for API calls · 6743c3d3
  Kenzo-Hugo Hillion authored Aug 26, 2019
  
  6743c3d3
23 Aug, 2019 2 commits
- start class to contact metagenedb api · 197b32bd
  Kenzo-Hugo Hillion authored Aug 23, 2019
  
  197b32bd
- add upsert method to genes API · 77df3e6f
  Kenzo-Hugo Hillion authored Aug 23, 2019
  
  77df3e6f
22 Aug, 2019 2 commits
- Change gene_id to slugfield · e400f19c
  Kenzo-Hugo Hillion authored Aug 22, 2019
  
  e400f19c
- Temporary remove permission for create gene · e2f7adf6
  Kenzo-Hugo Hillion authored Aug 22, 2019
  
  e2f7adf6
08 Aug, 2019 1 commit
- start using factory boy for tests · c6933a0c
  Kenzo-Hugo Hillion authored Aug 08, 2019
  
  c6933a0c
07 Aug, 2019 5 commits
- change name gene_length to length · ba20e779
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  ba20e779
- create custom API documentation for gene_length endpoint · 0e823d06
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  0e823d06
- change name gene length to length · 7fb4d79e
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  7fb4d79e
- make gene length positive only · 65ee2b07
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  65ee2b07
- add basis for swagger documentation of API · 65eab49d
  Kenzo-Hugo Hillion authored Aug 07, 2019
  
  65eab49d
06 Aug, 2019 1 commit
- Change status when no content for gene_length · b63f5670
  Kenzo-Hugo Hillion authored Aug 06, 2019
  
  b63f5670
05 Aug, 2019 4 commits
- Add taxonomy to Gene model · f5da1cca
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  f5da1cca
- reformat parser for IGC and add tests · 25377fe4
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  25377fe4
- cleaning up backend and rm useless code · 9ea066fd
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  9ea066fd
- Fix test and add url namespaces · f5d044eb
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  f5d044eb
02 Aug, 2019 5 commits
- use pagination with page number · 4352eea6
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  4352eea6
- add default pagination for list in API · 163618b9
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  163618b9
- Use ViewSet for Gene API · ddb2bfe5
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  ddb2bfe5
- reorganize API for catalog · 3b867015
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  3b867015
- Start cleaning backend and moving account to API · 51720f4c
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  51720f4c
01 Aug, 2019 2 commits
- Replace custom insertion_model by serializers · 0f854f02
  Kenzo-Hugo Hillion authored Aug 01, 2019
  
  0f854f02
- Change image link for test · 559197ee
  Kenzo-Hugo Hillion authored Aug 01, 2019
```
get back to latest postgres

change service to test only

remove k8s
```
  559197ee
18 Jul, 2019 1 commit
- add superkingdom and improve performances · bee34ed2
  Kenzo-Hugo Hillion authored Jul 18, 2019
  
  bee34ed2
17 Jul, 2019 3 commits
- Add building of hierarchy from direct parent · e679c49d
  Kenzo-Hugo Hillion authored Jul 17, 2019
  
  e679c49d
- fix flake8 · 45c841f0
  Kenzo-Hugo Hillion authored Jul 17, 2019
  
  45c841f0
- Add Taxonomy model and script to import from local files · f00c7a44
  Kenzo-Hugo Hillion authored Jul 17, 2019
  
  f00c7a44
16 Jul, 2019 6 commits
- fix flake8 · 08993b8c
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  08993b8c
- Add common class to perform insertion to DB · 2c1e3d6b
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  2c1e3d6b
- Use utils method to extract many to many fields · 61a3b8ad
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  61a3b8ad
- add option to keep original source dict · da92c961
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  da92c961
- add operation to extract subdict from dict · fe154842
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  fe154842
- Refactor parsers for NCBI taxo and KEGG ko list · 170bd11b
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  170bd11b
15 Jul, 2019 2 commits
- add parser for names.dmp from NCBI taxonomy · bb32c198
  Kenzo-Hugo Hillion authored Jul 15, 2019
  
  bb32c198
- add line parser for ncbi nodes.dmp file · 82af11b1
  Kenzo-Hugo Hillion authored Jul 15, 2019
  
  82af11b1
08 Jul, 2019 1 commit
- add jupyter to dev packages · 6b5a015c
  Kenzo-Hugo Hillion authored Jul 08, 2019
  
  6b5a015c
27 Jun, 2019 2 commits
- Set up pipenv for backend · 1eb6e7e1
  Kenzo-Hugo Hillion authored Jun 27, 2019
  
  1eb6e7e1
- Make permissions for any for the moment and fix tests · 4947602d
  Kenzo-Hugo Hillion authored Jun 27, 2019
  
  4947602d