Commits · ac12a76b0b90ceddee3eb63c2d8374b0b604c402 · Metagenomics / metagenedb

27 Nov, 2019 4 commits
- Improve route for gene_length · ac12a76b
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  ac12a76b
- Add documentation about profiling · b2f4f373
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  b2f4f373
- Add profiling tool for performance issues · 8cfa5c1e
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  8cfa5c1e
- Return allowed query params for 422 · d8c73868
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  d8c73868
22 Nov, 2019 9 commits
- Merge branch '65-handle-wrong-IGC-annotations' into 'dev' · 6cf1eabb
  Kenzo-Hugo Hillion authored Nov 22, 2019
```
Check if function exists in the db or remove it from payload

Closes #65

See merge request !20
```
  6cf1eabb
- Check if function exists in the db or remove it from payload · 10c4b4ad
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  10c4b4ad
- Merge branch '66-get-all-genus-phylum-local' into 'dev' · 3bd58750
  Kenzo-Hugo Hillion authored Nov 22, 2019
```
mprove the way mapping between taxonomy names and id is done during IGC gene creation

Closes #66

See merge request !19
```
  3bd58750
- Add page_size and isolate default classes for django settings · 83746eaa
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  83746eaa
- Update way of getting taxonomy while importing IGC genes · 5635b146
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  5635b146
- Add method to build local mapping for genus and phylum · 04881127
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  04881127
- create fuzzylowertext and refactor · 52f4fa56
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  52f4fa56
- Improve ids for item factory for tests · 1297a106
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  1297a106
- allow page as query param by default · f8dbb4e9
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  f8dbb4e9
21 Nov, 2019 5 commits
- Use backend route for kegg details · 191075f1
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  191075f1
- Merge branch '63-service-for-external-API-request' into 'dev' · da010ccf
  Kenzo-Hugo Hillion authored Nov 21, 2019
```
Resolve "Create backend service to perform request to external APIs"

Closes #63

See merge request !18
```
  da010ccf
- add tests for wrong query params · c6c3e257
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  c6c3e257
- add validation of qparams for all bulkviewset views · 1ba5dc9a
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  1ba5dc9a
- remove useless code · 81641e78
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  81641e78
20 Nov, 2019 1 commit
- Add validation for query params · 907a5126
  Kenzo-Hugo Hillion authored Nov 20, 2019
  
  907a5126
19 Nov, 2019 7 commits
- Add tests for custom retrieve function · d3823222
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  d3823222
- return db_data if source not found · 51407c65
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  51407c65
- raise notimplementederror for source with no API · dff4e9c0
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  dff4e9c0
- fix flake8 · 25fc8112
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  25fc8112
- add vizualization dev tool for profiling and options for script · 7d853553
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  7d853553
- fix handling of taxonomy and way it is skipped · 4a09070c
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  4a09070c
- modify handling of taxonomy · 220b598c
  Kenzo-Hugo Hillion authored Nov 19, 2019
  
  220b598c
18 Nov, 2019 2 commits
- add test for togows utils · 69643d1f
  Kenzo-Hugo Hillion authored Nov 18, 2019
  
  69643d1f
- [quick fix] allow creating gene with several KEGG from IGC · c9eb07d8
  Kenzo-Hugo Hillion authored Nov 18, 2019
  
  c9eb07d8
15 Nov, 2019 1 commit
- add detailed option for function API · db3f33e9
  Kenzo-Hugo Hillion authored Nov 15, 2019
  
  db3f33e9
14 Nov, 2019 5 commits
- fix flake8 · eaa9d70a
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  eaa9d70a
- replace endpoint by class to call different external APIs · 0120036a
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  0120036a
- add endpoint to obtain detailed info from kegg through togows · 9d65ac11
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  9d65ac11
- change resources for postgresql on kubernetes · 41f9f815
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  41f9f815
- Start testing new view for external requests · db3e5157
  Kenzo-Hugo Hillion authored Nov 14, 2019
  
  db3e5157
12 Nov, 2019 2 commits
- Merge branch 'benchmark-frontend' into 'dev' · 9f1dd1ac
  Kenzo-Hugo Hillion authored Nov 12, 2019
```
Add gene detail page on frontend

Closes #61 and #56

See merge request !17
```
  9f1dd1ac
- Add link from gene list and deal with no information from kegg and taxonomy · 9ca50215
  Kenzo-Hugo Hillion authored Nov 12, 2019
  
  9ca50215
08 Nov, 2019 4 commits
- Refactor and improve KEGG panel · d0c1c962
  Kenzo-Hugo Hillion authored Nov 08, 2019
  
  d0c1c962
- rename color for gene functions · 80fc11b1
  Kenzo-Hugo Hillion authored Nov 08, 2019
  
  80fc11b1
- Add details when getting taxonomy of function item · 7cd9339c
  Kenzo-Hugo Hillion authored Nov 08, 2019
  
  7cd9339c
- Add component for taxonomy in gene details · 93939b4a
  Kenzo-Hugo Hillion authored Nov 08, 2019
  
  93939b4a