Commits · b63f5670f4f2f9a48a9f4ea61469888f5f56606a · Metagenomics / metagenedb

06 Aug, 2019 1 commit
- Change status when no content for gene_length · b63f5670
  Kenzo-Hugo Hillion authored Aug 06, 2019
  
  b63f5670
05 Aug, 2019 9 commits
- restrict deployement to dev branch · ecd074eb
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  ecd074eb
- Merge branch '40-import-taxo-genes' into 'master' · fd935b95
  Kenzo-Hugo Hillion authored Aug 05, 2019
```
Add taxonomy information to IGC genes

Closes #40

See merge request !8
```
  fd935b95
- Add taxonomy to Gene model · f5da1cca
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  f5da1cca
- reformat parser for IGC and add tests · 25377fe4
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  25377fe4
- Merge branch '27-backend-cleaning' into 'master' · d2949072
  Kenzo-Hugo Hillion authored Aug 05, 2019
```
Resolve "Reorganize backend architecture"

Closes #27 and #33

See merge request !7
```
  d2949072
- cleaning up backend and rm useless code · 9ea066fd
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  9ea066fd
- fix backend urls · 0ee67a41
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  0ee67a41
- tell nginx it needs frontend to fix #33 · 06936bc6
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  06936bc6
- Fix test and add url namespaces · f5d044eb
  Kenzo-Hugo Hillion authored Aug 05, 2019
  
  f5d044eb
02 Aug, 2019 5 commits
- use pagination with page number · 4352eea6
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  4352eea6
- add default pagination for list in API · 163618b9
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  163618b9
- Use ViewSet for Gene API · ddb2bfe5
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  ddb2bfe5
- reorganize API for catalog · 3b867015
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  3b867015
- Start cleaning backend and moving account to API · 51720f4c
  Kenzo-Hugo Hillion authored Aug 02, 2019
  
  51720f4c
01 Aug, 2019 4 commits
- Merge branch '28-remove-insertion-model' into 'master' · 802c9c13
  Kenzo-Hugo Hillion authored Aug 01, 2019
```
Replace custom insertion_model by serializers

Closes #28

See merge request !6
```
  802c9c13
- Replace custom insertion_model by serializers · 0f854f02
  Kenzo-Hugo Hillion authored Aug 01, 2019
  
  0f854f02
- Merge branch '11-kubernetes-setup' into 'master' · a569de25
  Kenzo-Hugo Hillion authored Aug 01, 2019
```
Set up Kubernetes for the project

Closes #11

See merge request !5
```
  a569de25
- Change image link for test · 559197ee
  Kenzo-Hugo Hillion authored Aug 01, 2019
```
get back to latest postgres

change service to test only

remove k8s
```
  559197ee
19 Jul, 2019 2 commits
- Merge branch '23-taxonomy-model' into 'master' · 5ae2909a
  Kenzo-Hugo Hillion authored Jul 19, 2019
```
add superkingdom and improve performances

Closes #23

See merge request !4
```
  5ae2909a
- Merge branch '23-taxonomy-model' into 'master' · 365da9d0
  Kenzo-Hugo Hillion authored Jul 19, 2019
```
Integrate taxonomy to database

Closes #23

See merge request !3
```
  365da9d0
18 Jul, 2019 1 commit
- add superkingdom and improve performances · bee34ed2
  Kenzo-Hugo Hillion authored Jul 18, 2019
  
  bee34ed2
17 Jul, 2019 3 commits
- Add building of hierarchy from direct parent · e679c49d
  Kenzo-Hugo Hillion authored Jul 17, 2019
  
  e679c49d
- fix flake8 · 45c841f0
  Kenzo-Hugo Hillion authored Jul 17, 2019
  
  45c841f0
- Add Taxonomy model and script to import from local files · f00c7a44
  Kenzo-Hugo Hillion authored Jul 17, 2019
  
  f00c7a44
16 Jul, 2019 6 commits
- fix flake8 · 08993b8c
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  08993b8c
- Add common class to perform insertion to DB · 2c1e3d6b
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  2c1e3d6b
- Use utils method to extract many to many fields · 61a3b8ad
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  61a3b8ad
- add option to keep original source dict · da92c961
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  da92c961
- add operation to extract subdict from dict · fe154842
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  fe154842
- Refactor parsers for NCBI taxo and KEGG ko list · 170bd11b
  Kenzo-Hugo Hillion authored Jul 16, 2019
  
  170bd11b
15 Jul, 2019 2 commits
- add parser for names.dmp from NCBI taxonomy · bb32c198
  Kenzo-Hugo Hillion authored Jul 15, 2019
  
  bb32c198
- add line parser for ncbi nodes.dmp file · 82af11b1
  Kenzo-Hugo Hillion authored Jul 15, 2019
  
  82af11b1
11 Jul, 2019 1 commit
- fix front warnings · cbad11aa
  Kenzo-Hugo Hillion authored Jul 11, 2019
  
  cbad11aa
08 Jul, 2019 1 commit
- add jupyter to dev packages · 6b5a015c
  Kenzo-Hugo Hillion authored Jul 08, 2019
  
  6b5a015c
02 Jul, 2019 1 commit
- change route for catalog stats · a077711b
  Kenzo-Hugo Hillion authored Jul 02, 2019
  
  a077711b
01 Jul, 2019 4 commits
- add empty column to table in front · 868ccd42
  Kenzo-Hugo Hillion authored Jul 01, 2019
  
  868ccd42
- continue improving frontend for discussion · cfe82121
  Kenzo-Hugo Hillion authored Jul 01, 2019
  
  cfe82121
- Merge branch 'master' of gitlab.pasteur.fr:metagenomics/metagenedb · 23bb1f90
  Kenzo-Hugo Hillion authored Jul 01, 2019
  
  23bb1f90
- use only one docker compose · 724674d2
  Kenzo-Hugo Hillion authored Jul 01, 2019
  
  724674d2