Commits · db4cb890321024ad64dc81f653bdc1940208a128 · Metagenomics / metagenedb

11 Dec, 2019 4 commits
- Deal with EggNOG in creation of genes · db4cb890
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  db4cb890
- add script to create functional categories from manage · 793e61eb
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  793e61eb
- update bioapi version · e7f37e19
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  e7f37e19
- parser for eggnog functional categories · c78cb131
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  c78cb131
10 Dec, 2019 5 commits
- Handle eggnog with multiple functional categories · fe09bec9
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  fe09bec9
- update model for m2m eggnog - functional cat · f0fb2d72
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  f0fb2d72
- parse functional category as a list instead of unique value · e7c74843
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  e7c74843
- fix flake8 · 4f5b73fc
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  4f5b73fc
- improve eggnog creation · 7c1d40e3
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  7c1d40e3
09 Dec, 2019 7 commits
- remove end line · eff3e6ce
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  eff3e6ce
- raise exception when no functional categories available yet · b3c47f2f
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  b3c47f2f
- Add script to load EggNog into the db · 09458ad3
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  09458ad3
- add eggnog line parser · 7f863a0d
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  7f863a0d
- refacto style · a68b6d27
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  a68b6d27
- Add script to build KEGG directly from manage.py · 26fc8187
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  26fc8187
- Make specific routes for eggnog and kegg · e2013000
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  e2013000
06 Dec, 2019 9 commits
- Start adding model for Eggnog · 66d3f01e
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  66d3f01e
- Merge branch '45-permissions-auth' into 'dev' · 364475de
  Kenzo-Hugo Hillion authored Dec 06, 2019
```
Use permissions and auth

Closes #45

See merge request !24
```
  364475de
- fix flake8 · 3ef29baf
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  3ef29baf
- refacto base for tests as admin · 799382cb
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  799382cb
- remove editable from bioapi · 23929d48
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  23929d48
- try to fix CI · 741192ee
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  741192ee
- update link to repo bioapi · 7a1f791a
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  7a1f791a
- Fix tests · e6ae6e46
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  e6ae6e46
- add requirement for JWT token to create database · d2ffd8c9
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  d2ffd8c9
05 Dec, 2019 2 commits
- add permissions for all to list only · 9821e311
  Kenzo-Hugo Hillion authored Dec 05, 2019
  
  9821e311
- remove taxlevel watcher · 4643e950
  Kenzo-Hugo Hillion authored Dec 05, 2019
  
  4643e950
04 Dec, 2019 5 commits
- Merge branch '67-statistics-on-genes' into 'dev' · 8e05be86
  Kenzo-Hugo Hillion authored Dec 04, 2019
```
Add more statistical graph about gene catalog

Closes #67

See merge request !23
```
  8e05be86
- clean code · 584a5f59
  Kenzo-Hugo Hillion authored Dec 04, 2019
  
  584a5f59
- add more values for gene length · 925b5b5e
  Kenzo-Hugo Hillion authored Dec 04, 2019
  
  925b5b5e
- Improve components with props ID and loading icon · 61af92b5
  Kenzo-Hugo Hillion authored Dec 04, 2019
  
  61af92b5
- add dynamic label for hide fields · da2a9bc0
  Kenzo-Hugo Hillion authored Dec 04, 2019
  
  da2a9bc0
03 Dec, 2019 1 commit
- add interactive options for doughnut graph · 75246de9
  Kenzo-Hugo Hillion authored Dec 03, 2019
  
  75246de9
02 Dec, 2019 5 commits
- Add buttons for selection · 2d989b93
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  2d989b93
- externalize headers of graphs · 08744778
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  08744778
- add visualization for phylum annotation on db · 8d6064a7
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  8d6064a7
- add route to retrieve counts of taxonomical annotations per level · 2fe3bd45
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  2fe3bd45
- Improve perf for counting windows · bd68a8c4
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  bd68a8c4
29 Nov, 2019 2 commits
- Merge branch '67-statistics-on-genes' into 'dev' · 9650a34f
  Kenzo-Hugo Hillion authored Nov 29, 2019
```
Add cards for global counts of annotation on the database

See merge request !22
```
  9650a34f
- add statistics about annotation · 87cb9d53
  Kenzo-Hugo Hillion authored Nov 29, 2019
  
  87cb9d53