Commits · db4cb890321024ad64dc81f653bdc1940208a128 · Metagenomics / metagenedb · GitLab

11 Dec, 2019 4 commits
- Deal with EggNOG in creation of genes · db4cb890
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  db4cb890
- add script to create functional categories from manage · 793e61eb
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  793e61eb
- update bioapi version · e7f37e19
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  e7f37e19
- parser for eggnog functional categories · c78cb131
  Kenzo-Hugo Hillion authored Dec 11, 2019
  
  c78cb131
10 Dec, 2019 5 commits
- Handle eggnog with multiple functional categories · fe09bec9
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  fe09bec9
- update model for m2m eggnog - functional cat · f0fb2d72
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  f0fb2d72
- parse functional category as a list instead of unique value · e7c74843
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  e7c74843
- fix flake8 · 4f5b73fc
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  4f5b73fc
- improve eggnog creation · 7c1d40e3
  Kenzo-Hugo Hillion authored Dec 10, 2019
  
  7c1d40e3
09 Dec, 2019 7 commits
- remove end line · eff3e6ce
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  eff3e6ce
- raise exception when no functional categories available yet · b3c47f2f
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  b3c47f2f
- Add script to load EggNog into the db · 09458ad3
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  09458ad3
- add eggnog line parser · 7f863a0d
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  7f863a0d
- refacto style · a68b6d27
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  a68b6d27
- Add script to build KEGG directly from manage.py · 26fc8187
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  26fc8187
- Make specific routes for eggnog and kegg · e2013000
  Kenzo-Hugo Hillion authored Dec 09, 2019
  
  e2013000
06 Dec, 2019 8 commits
- Start adding model for Eggnog · 66d3f01e
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  66d3f01e
- fix flake8 · 3ef29baf
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  3ef29baf
- refacto base for tests as admin · 799382cb
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  799382cb
- remove editable from bioapi · 23929d48
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  23929d48
- try to fix CI · 741192ee
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  741192ee
- update link to repo bioapi · 7a1f791a
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  7a1f791a
- Fix tests · e6ae6e46
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  e6ae6e46
- add requirement for JWT token to create database · d2ffd8c9
  Kenzo-Hugo Hillion authored Dec 06, 2019
  
  d2ffd8c9
05 Dec, 2019 1 commit
- add permissions for all to list only · 9821e311
  Kenzo-Hugo Hillion authored Dec 05, 2019
  
  9821e311
02 Dec, 2019 2 commits
- add route to retrieve counts of taxonomical annotations per level · 2fe3bd45
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  2fe3bd45
- Improve perf for counting windows · bd68a8c4
  Kenzo-Hugo Hillion authored Dec 02, 2019
  
  bd68a8c4
29 Nov, 2019 1 commit
- add filter on presence absence of tax and functions · 8bfe6c63
  Kenzo-Hugo Hillion authored Nov 29, 2019
  
  8bfe6c63
27 Nov, 2019 4 commits
- add test for gene_length API · e6b74ca2
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  e6b74ca2
- Improve route for gene_length · ac12a76b
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  ac12a76b
- Add profiling tool for performance issues · 8cfa5c1e
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  8cfa5c1e
- Return allowed query params for 422 · d8c73868
  Kenzo-Hugo Hillion authored Nov 27, 2019
  
  d8c73868
22 Nov, 2019 7 commits
- Check if function exists in the db or remove it from payload · 10c4b4ad
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  10c4b4ad
- Add page_size and isolate default classes for django settings · 83746eaa
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  83746eaa
- Update way of getting taxonomy while importing IGC genes · 5635b146
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  5635b146
- Add method to build local mapping for genus and phylum · 04881127
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  04881127
- create fuzzylowertext and refactor · 52f4fa56
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  52f4fa56
- Improve ids for item factory for tests · 1297a106
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  1297a106
- allow page as query param by default · f8dbb4e9
  Kenzo-Hugo Hillion authored Nov 22, 2019
  
  f8dbb4e9
21 Nov, 2019 1 commit
- add tests for wrong query params · c6c3e257
  Kenzo-Hugo Hillion authored Nov 21, 2019
  
  c6c3e257