diff --git a/tools/utils/cat/example_usage/config.yaml b/tools/utils/cat/example_usage/config.yaml index f74b24f75b4c5d480d608695192953860bbe6778..b0d0444ad73e58f3c1e6ebdde07204907fb38d95 100644 --- a/tools/utils/cat/example_usage/config.yaml +++ b/tools/utils/cat/example_usage/config.yaml @@ -10,4 +10,4 @@ samples: - test_00002 cat: - name_merge: all.emapper.seed_orthologs + name_merge: all.emapper.seed_orthologs diff --git a/workflows/eggnogmapperv2/README.md b/workflows/eggnogmapperv2/README.md new file mode 100644 index 0000000000000000000000000000000000000000..008482c4b9e7856ea799b08159d396cc5dbd3779 --- /dev/null +++ b/workflows/eggnogmapperv2/README.md @@ -0,0 +1,10 @@ +# EggNOG mapper v2 + +This describes a workflow to run [eggnog mapper on a large dataset](https://github.com/eggnogdb/eggnog-mapper/wiki/eggNOG-mapper-v2#setting-up-large-annotation-jobs) + +In brief it contains 4 steps: + +* Splitting the input FASTA files into chunks +* Run diamond from eggnogmapper on each chunks +* Merge all results to one unique `emapper.seed_orthologs` +* Perform annotations from this unique file