From 05042bc79b0b52e63af5c3d3c50f69f8587a0c13 Mon Sep 17 00:00:00 2001 From: Kenzo-Hugo Hillion <hillion.kenzo@gmail.com> Date: Tue, 20 Jul 2021 10:34:44 +0200 Subject: [PATCH] file rights --- .workflow-index.yml | 0 README.md | 0 subworkflows/README.md | 0 subworkflows/graphlan_from_metaphlan2/Snakefile | 0 tools/README.md | 0 tools/eggnogmapper2/annotate/Snakefile | 0 tools/eggnogmapper2/annotate/example_usage/Snakefile | 0 tools/eggnogmapper2/annotate/example_usage/config.yaml | 0 tools/eggnogmapper2/diamond/Snakefile | 0 tools/eggnogmapper2/diamond/example_usage/Snakefile | 0 tools/eggnogmapper2/diamond/example_usage/config.yaml | 0 tools/graphlan/export2graphlan/Snakefile | 0 tools/graphlan/graphlan/Snakefile | 0 tools/graphlan/graphlan_annotate/Snakefile | 0 tools/metaphlan2/metaphlan2/paired/Snakefile | 0 tools/metaphlan2/metaphlan2/paired/config_example.yaml | 0 tools/metaphlan2/metaphlan2/single/Snakefile | 0 tools/metaphlan2/metaphlan2/single/config_example.yaml | 0 tools/metaphlan2/metaphlan2_heatmap/Snakefile | 0 tools/metaphlan2/metaphlan2_heatmap/config.yaml | 0 tools/metaphlan2/metaphlan2_heatmap/usage_example.rules | 0 tools/metaphlan2/metaphlan2_merge/Snakefile | 0 tools/metaphlan2/metaphlan2_merge/config.yaml | 0 tools/metaphlan2/metaphlan2_merge/usage_example.rules | 0 tools/metaphlan3/metaphlan/paired/Snakefile | 0 tools/metaphlan3/metaphlan/paired/config_example.yaml | 0 tools/metaphlan3/metaphlan/single/Snakefile | 0 tools/metaphlan3/metaphlan/single/config_example.yaml | 0 tools/strainphlan/extract_markers/README.md | 0 tools/strainphlan/sample2markers/README.md | 0 tools/strainphlan/sample2markers/Snakefile | 0 tools/strainphlan/sample2markers/config.yaml | 0 tools/strainphlan/strainphlan/README.md | 0 tools/strainphlan/strainphlan/Snakefile | 0 tools/strainphlan/strainphlan/config.yaml | 0 tools/utils/cat/Snakefile | 0 tools/utils/cat/example_usage/Snakefile | 0 tools/utils/cat/example_usage/config.yaml | 0 tools/utils/split_fasta/Snakefile | 0 tools/utils/split_fasta/example_usage/Snakefile | 0 tools/utils/split_fasta/example_usage/config.yaml | 0 workflows/README.md | 0 workflows/cluster.yml | 0 workflows/eggnogmapperv2/README.md | 0 workflows/eggnogmapperv2/Snakefile | 0 workflows/eggnogmapperv2/config.yaml | 0 workflows/metaphlan2/README.md | 0 workflows/metaphlan2/paired_metaphlan2/Snakefile | 0 workflows/metaphlan2/paired_metaphlan2/config.yaml | 0 workflows/metaphlan2/single_metaphlan2/Snakefile | 0 workflows/metaphlan2/single_metaphlan2/config.yaml | 0 workflows/metaphlan3/README.md | 0 workflows/metaphlan3/paired_metaphlan2/Snakefile | 0 workflows/metaphlan3/paired_metaphlan2/config.yaml | 0 workflows/strainphlan/README.md | 0 workflows/strainphlan/Snakefile | 0 workflows/strainphlan/config.yaml | 0 57 files changed, 0 insertions(+), 0 deletions(-) mode change 100644 => 100755 .workflow-index.yml mode change 100644 => 100755 README.md mode change 100644 => 100755 subworkflows/README.md mode change 100644 => 100755 subworkflows/graphlan_from_metaphlan2/Snakefile mode change 100644 => 100755 tools/README.md mode change 100644 => 100755 tools/eggnogmapper2/annotate/Snakefile mode change 100644 => 100755 tools/eggnogmapper2/annotate/example_usage/Snakefile mode change 100644 => 100755 tools/eggnogmapper2/annotate/example_usage/config.yaml mode change 100644 => 100755 tools/eggnogmapper2/diamond/Snakefile mode change 100644 => 100755 tools/eggnogmapper2/diamond/example_usage/Snakefile mode change 100644 => 100755 tools/eggnogmapper2/diamond/example_usage/config.yaml mode change 100644 => 100755 tools/graphlan/export2graphlan/Snakefile mode change 100644 => 100755 tools/graphlan/graphlan/Snakefile mode change 100644 => 100755 tools/graphlan/graphlan_annotate/Snakefile mode change 100644 => 100755 tools/metaphlan2/metaphlan2/paired/Snakefile mode change 100644 => 100755 tools/metaphlan2/metaphlan2/paired/config_example.yaml mode change 100644 => 100755 tools/metaphlan2/metaphlan2/single/Snakefile mode change 100644 => 100755 tools/metaphlan2/metaphlan2/single/config_example.yaml mode change 100644 => 100755 tools/metaphlan2/metaphlan2_heatmap/Snakefile mode change 100644 => 100755 tools/metaphlan2/metaphlan2_heatmap/config.yaml mode change 100644 => 100755 tools/metaphlan2/metaphlan2_heatmap/usage_example.rules mode change 100644 => 100755 tools/metaphlan2/metaphlan2_merge/Snakefile mode change 100644 => 100755 tools/metaphlan2/metaphlan2_merge/config.yaml mode change 100644 => 100755 tools/metaphlan2/metaphlan2_merge/usage_example.rules mode change 100644 => 100755 tools/metaphlan3/metaphlan/paired/Snakefile mode change 100644 => 100755 tools/metaphlan3/metaphlan/paired/config_example.yaml mode change 100644 => 100755 tools/metaphlan3/metaphlan/single/Snakefile mode change 100644 => 100755 tools/metaphlan3/metaphlan/single/config_example.yaml mode change 100644 => 100755 tools/strainphlan/extract_markers/README.md mode change 100644 => 100755 tools/strainphlan/sample2markers/README.md mode change 100644 => 100755 tools/strainphlan/sample2markers/Snakefile mode change 100644 => 100755 tools/strainphlan/sample2markers/config.yaml mode change 100644 => 100755 tools/strainphlan/strainphlan/README.md mode change 100644 => 100755 tools/strainphlan/strainphlan/Snakefile mode change 100644 => 100755 tools/strainphlan/strainphlan/config.yaml mode change 100644 => 100755 tools/utils/cat/Snakefile mode change 100644 => 100755 tools/utils/cat/example_usage/Snakefile mode change 100644 => 100755 tools/utils/cat/example_usage/config.yaml mode change 100644 => 100755 tools/utils/split_fasta/Snakefile mode change 100644 => 100755 tools/utils/split_fasta/example_usage/Snakefile mode change 100644 => 100755 tools/utils/split_fasta/example_usage/config.yaml mode change 100644 => 100755 workflows/README.md mode change 100644 => 100755 workflows/cluster.yml mode change 100644 => 100755 workflows/eggnogmapperv2/README.md mode change 100644 => 100755 workflows/eggnogmapperv2/Snakefile mode change 100644 => 100755 workflows/eggnogmapperv2/config.yaml mode change 100644 => 100755 workflows/metaphlan2/README.md mode change 100644 => 100755 workflows/metaphlan2/paired_metaphlan2/Snakefile mode change 100644 => 100755 workflows/metaphlan2/paired_metaphlan2/config.yaml mode change 100644 => 100755 workflows/metaphlan2/single_metaphlan2/Snakefile mode change 100644 => 100755 workflows/metaphlan2/single_metaphlan2/config.yaml mode change 100644 => 100755 workflows/metaphlan3/README.md mode change 100644 => 100755 workflows/metaphlan3/paired_metaphlan2/Snakefile mode change 100644 => 100755 workflows/metaphlan3/paired_metaphlan2/config.yaml mode change 100644 => 100755 workflows/strainphlan/README.md mode change 100644 => 100755 workflows/strainphlan/Snakefile mode change 100644 => 100755 workflows/strainphlan/config.yaml diff --git a/.workflow-index.yml b/.workflow-index.yml old mode 100644 new mode 100755 diff --git a/README.md b/README.md old mode 100644 new mode 100755 diff --git a/subworkflows/README.md b/subworkflows/README.md old mode 100644 new mode 100755 diff --git a/subworkflows/graphlan_from_metaphlan2/Snakefile b/subworkflows/graphlan_from_metaphlan2/Snakefile old mode 100644 new mode 100755 diff --git a/tools/README.md b/tools/README.md old mode 100644 new mode 100755 diff --git a/tools/eggnogmapper2/annotate/Snakefile b/tools/eggnogmapper2/annotate/Snakefile old mode 100644 new mode 100755 diff --git a/tools/eggnogmapper2/annotate/example_usage/Snakefile b/tools/eggnogmapper2/annotate/example_usage/Snakefile old mode 100644 new mode 100755 diff --git a/tools/eggnogmapper2/annotate/example_usage/config.yaml b/tools/eggnogmapper2/annotate/example_usage/config.yaml old mode 100644 new mode 100755 diff --git a/tools/eggnogmapper2/diamond/Snakefile b/tools/eggnogmapper2/diamond/Snakefile old mode 100644 new mode 100755 diff --git a/tools/eggnogmapper2/diamond/example_usage/Snakefile b/tools/eggnogmapper2/diamond/example_usage/Snakefile old mode 100644 new mode 100755 diff --git a/tools/eggnogmapper2/diamond/example_usage/config.yaml b/tools/eggnogmapper2/diamond/example_usage/config.yaml old mode 100644 new mode 100755 diff --git a/tools/graphlan/export2graphlan/Snakefile b/tools/graphlan/export2graphlan/Snakefile old mode 100644 new mode 100755 diff --git a/tools/graphlan/graphlan/Snakefile b/tools/graphlan/graphlan/Snakefile old mode 100644 new mode 100755 diff --git a/tools/graphlan/graphlan_annotate/Snakefile b/tools/graphlan/graphlan_annotate/Snakefile old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2/paired/Snakefile b/tools/metaphlan2/metaphlan2/paired/Snakefile old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2/paired/config_example.yaml b/tools/metaphlan2/metaphlan2/paired/config_example.yaml old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2/single/Snakefile b/tools/metaphlan2/metaphlan2/single/Snakefile old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2/single/config_example.yaml b/tools/metaphlan2/metaphlan2/single/config_example.yaml old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2_heatmap/Snakefile b/tools/metaphlan2/metaphlan2_heatmap/Snakefile old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2_heatmap/config.yaml b/tools/metaphlan2/metaphlan2_heatmap/config.yaml old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2_heatmap/usage_example.rules b/tools/metaphlan2/metaphlan2_heatmap/usage_example.rules old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2_merge/Snakefile b/tools/metaphlan2/metaphlan2_merge/Snakefile old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2_merge/config.yaml b/tools/metaphlan2/metaphlan2_merge/config.yaml old mode 100644 new mode 100755 diff --git a/tools/metaphlan2/metaphlan2_merge/usage_example.rules b/tools/metaphlan2/metaphlan2_merge/usage_example.rules old mode 100644 new mode 100755 diff --git a/tools/metaphlan3/metaphlan/paired/Snakefile b/tools/metaphlan3/metaphlan/paired/Snakefile old mode 100644 new mode 100755 diff --git a/tools/metaphlan3/metaphlan/paired/config_example.yaml b/tools/metaphlan3/metaphlan/paired/config_example.yaml old mode 100644 new mode 100755 diff --git a/tools/metaphlan3/metaphlan/single/Snakefile b/tools/metaphlan3/metaphlan/single/Snakefile old mode 100644 new mode 100755 diff --git a/tools/metaphlan3/metaphlan/single/config_example.yaml b/tools/metaphlan3/metaphlan/single/config_example.yaml old mode 100644 new mode 100755 diff --git a/tools/strainphlan/extract_markers/README.md b/tools/strainphlan/extract_markers/README.md old mode 100644 new mode 100755 diff --git a/tools/strainphlan/sample2markers/README.md b/tools/strainphlan/sample2markers/README.md old mode 100644 new mode 100755 diff --git a/tools/strainphlan/sample2markers/Snakefile b/tools/strainphlan/sample2markers/Snakefile old mode 100644 new mode 100755 diff --git a/tools/strainphlan/sample2markers/config.yaml b/tools/strainphlan/sample2markers/config.yaml old mode 100644 new mode 100755 diff --git a/tools/strainphlan/strainphlan/README.md b/tools/strainphlan/strainphlan/README.md old mode 100644 new mode 100755 diff --git a/tools/strainphlan/strainphlan/Snakefile b/tools/strainphlan/strainphlan/Snakefile old mode 100644 new mode 100755 diff --git a/tools/strainphlan/strainphlan/config.yaml b/tools/strainphlan/strainphlan/config.yaml old mode 100644 new mode 100755 diff --git a/tools/utils/cat/Snakefile b/tools/utils/cat/Snakefile old mode 100644 new mode 100755 diff --git a/tools/utils/cat/example_usage/Snakefile b/tools/utils/cat/example_usage/Snakefile old mode 100644 new mode 100755 diff --git a/tools/utils/cat/example_usage/config.yaml b/tools/utils/cat/example_usage/config.yaml old mode 100644 new mode 100755 diff --git a/tools/utils/split_fasta/Snakefile b/tools/utils/split_fasta/Snakefile old mode 100644 new mode 100755 diff --git a/tools/utils/split_fasta/example_usage/Snakefile b/tools/utils/split_fasta/example_usage/Snakefile old mode 100644 new mode 100755 diff --git a/tools/utils/split_fasta/example_usage/config.yaml b/tools/utils/split_fasta/example_usage/config.yaml old mode 100644 new mode 100755 diff --git a/workflows/README.md b/workflows/README.md old mode 100644 new mode 100755 diff --git a/workflows/cluster.yml b/workflows/cluster.yml old mode 100644 new mode 100755 diff --git a/workflows/eggnogmapperv2/README.md b/workflows/eggnogmapperv2/README.md old mode 100644 new mode 100755 diff --git a/workflows/eggnogmapperv2/Snakefile b/workflows/eggnogmapperv2/Snakefile old mode 100644 new mode 100755 diff --git a/workflows/eggnogmapperv2/config.yaml b/workflows/eggnogmapperv2/config.yaml old mode 100644 new mode 100755 diff --git a/workflows/metaphlan2/README.md b/workflows/metaphlan2/README.md old mode 100644 new mode 100755 diff --git a/workflows/metaphlan2/paired_metaphlan2/Snakefile b/workflows/metaphlan2/paired_metaphlan2/Snakefile old mode 100644 new mode 100755 diff --git a/workflows/metaphlan2/paired_metaphlan2/config.yaml b/workflows/metaphlan2/paired_metaphlan2/config.yaml old mode 100644 new mode 100755 diff --git a/workflows/metaphlan2/single_metaphlan2/Snakefile b/workflows/metaphlan2/single_metaphlan2/Snakefile old mode 100644 new mode 100755 diff --git a/workflows/metaphlan2/single_metaphlan2/config.yaml b/workflows/metaphlan2/single_metaphlan2/config.yaml old mode 100644 new mode 100755 diff --git a/workflows/metaphlan3/README.md b/workflows/metaphlan3/README.md old mode 100644 new mode 100755 diff --git a/workflows/metaphlan3/paired_metaphlan2/Snakefile b/workflows/metaphlan3/paired_metaphlan2/Snakefile old mode 100644 new mode 100755 diff --git a/workflows/metaphlan3/paired_metaphlan2/config.yaml b/workflows/metaphlan3/paired_metaphlan2/config.yaml old mode 100644 new mode 100755 diff --git a/workflows/strainphlan/README.md b/workflows/strainphlan/README.md old mode 100644 new mode 100755 diff --git a/workflows/strainphlan/Snakefile b/workflows/strainphlan/Snakefile old mode 100644 new mode 100755 diff --git a/workflows/strainphlan/config.yaml b/workflows/strainphlan/config.yaml old mode 100644 new mode 100755 -- GitLab