diff --git a/workflows/subworkflows/graphlan_from_metaphlan2/Snakefile b/workflows/subworkflows/graphlan_from_metaphlan2/Snakefile
index c1684d1b946871bc9c85994ab28dec4bc50010b2..ed2ab0401d21095c69a5990e2374470749a30bac 100644
--- a/workflows/subworkflows/graphlan_from_metaphlan2/Snakefile
+++ b/workflows/subworkflows/graphlan_from_metaphlan2/Snakefile
@@ -8,9 +8,9 @@ This subworkflow need to be called to be used by specifying:
 """
 
 # ==== Rule paths ==== 
-__export2graphlan_rules = config.get("rules", {}).get("export2graphlan", "../../tools/graphlan/export2graphlan/Snakefile")
-__graphlan_annotate_rules = config.get("rules", {}).get("graphlan_annotate", "../../tools/graphlan/graphlan_annotate/Snakefile")
-__graphlan_rules = config.get("rules", {}).get("graphlan", "../../tools/graphlan/graphlan/Snakefile")
+__export2graphlan_rules = config.get("rules", {}).get("export2graphlan", "../../../tools/graphlan/export2graphlan/Snakefile")
+__graphlan_annotate_rules = config.get("rules", {}).get("graphlan_annotate", "../../../tools/graphlan/graphlan_annotate/Snakefile")
+__graphlan_rules = config.get("rules", {}).get("graphlan", "../../../tools/graphlan/graphlan/Snakefile")
 
 # ---- export2graphlan
 __export2graphlan_input = __graphlan_from_metaphlan2_input