From 22379bccc07de7ee94cf902801a064ba889ae827 Mon Sep 17 00:00:00 2001
From: Kenzo-Hugo Hillion <kenzo-hugo.hillion1@pasteur.fr>
Date: Mon, 16 Mar 2020 16:12:18 +0100
Subject: [PATCH] fix diamond rule
---
tools/eggnogmapper2/diamond/Snakefile | 2 +-
tools/eggnogmapper2/diamond/example_usage/config.yaml | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/tools/eggnogmapper2/diamond/Snakefile b/tools/eggnogmapper2/diamond/Snakefile
index a387a6d..738f092 100644
--- a/tools/eggnogmapper2/diamond/Snakefile
+++ b/tools/eggnogmapper2/diamond/Snakefile
@@ -11,7 +11,7 @@ rule eggnogmapper2_diamond:
output:
__eggnogmapper2_diamond_output
params:
- exec_command = __eggnogmapper2_exec_command + ' -m diamond',
+ exec_command = __eggnogmapper2_exec_command + ' -m diamond --no_annot',
output_prefix = __eggnogmapper2_diamond_output_prefix,
options = __eggnogmapper2_diamond_options
threads:
diff --git a/tools/eggnogmapper2/diamond/example_usage/config.yaml b/tools/eggnogmapper2/diamond/example_usage/config.yaml
index 9e00779..5fe001f 100644
--- a/tools/eggnogmapper2/diamond/example_usage/config.yaml
+++ b/tools/eggnogmapper2/diamond/example_usage/config.yaml
@@ -12,4 +12,4 @@ samples:
eggnogmapper2:
exec_command: "/pasteur/homes/kehillio/venv/eggnog-mapper-v2/bin/python /pasteur/homes/kehillio/tools/eggnog-mapper/emapper.py"
diamond:
- options: "--no_annot --no_file_comments"
+ options: "--no_file_comments"
--
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